db-dtypes 1.4.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- db_dtypes/__init__.py +366 -0
- db_dtypes/_versions_helpers.py +32 -0
- db_dtypes/core.py +195 -0
- db_dtypes/json.py +281 -0
- db_dtypes/pandas_backports.py +74 -0
- db_dtypes/version.py +15 -0
- db_dtypes-1.4.3.dist-info/AUTHORS +9 -0
- db_dtypes-1.4.3.dist-info/LICENSE +202 -0
- db_dtypes-1.4.3.dist-info/METADATA +93 -0
- db_dtypes-1.4.3.dist-info/RECORD +12 -0
- db_dtypes-1.4.3.dist-info/WHEEL +5 -0
- db_dtypes-1.4.3.dist-info/top_level.txt +1 -0
db_dtypes/__init__.py
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# Copyright 2021 Google LLC
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# https://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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"""
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Pandas Data Types for SQL systems (BigQuery, Spanner)
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"""
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import datetime
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import re
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from typing import Optional, Union
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import warnings
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import numpy
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import pandas
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import pandas.api.extensions
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from pandas.errors import OutOfBoundsDatetime
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import pyarrow
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import pyarrow.compute
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from db_dtypes import core
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from db_dtypes.json import JSONArray, JSONDtype, JSONArrowType # noqa: F401
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from . import _versions_helpers
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date_dtype_name = "dbdate"
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time_dtype_name = "dbtime"
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_EPOCH = datetime.datetime(1970, 1, 1)
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_NPEPOCH = numpy.datetime64(_EPOCH)
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_NP_DTYPE = "datetime64[ns]"
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# Numpy converts datetime64 scalars to datetime.datetime only if microsecond or
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# smaller precision is used.
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#
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# TODO(https://github.com/googleapis/python-db-dtypes-pandas/issues/63): Keep
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# nanosecond precision when boxing scalars.
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_NP_BOX_DTYPE = "datetime64[us]"
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@pandas.api.extensions.register_extension_dtype
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class TimeDtype(core.BaseDatetimeDtype):
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"""
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Extension dtype for time data.
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"""
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name = time_dtype_name
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type = datetime.time
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def construct_array_type(self):
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return TimeArray
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@staticmethod
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def __from_arrow__(
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array: Union[pyarrow.Array, pyarrow.ChunkedArray]
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) -> "TimeArray":
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"""Convert to dbtime data from an Arrow array.
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See:
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https://pandas.pydata.org/pandas-docs/stable/development/extending.html#compatibility-with-apache-arrow
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"""
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# We can't call combine_chunks on an empty array, so short-circuit the
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# rest of the function logic for this special case.
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if len(array) == 0:
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return TimeArray(numpy.array([], dtype="datetime64[ns]"))
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# We can't cast to timestamp("ns"), but time64("ns") has the same
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# memory layout: 64-bit integers representing the number of nanoseconds
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# since the datetime epoch (midnight 1970-01-01).
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array = pyarrow.compute.cast(array, pyarrow.time64("ns"))
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# ChunkedArray has no "view" method, so combine into an Array.
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if isinstance(array, pyarrow.ChunkedArray):
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array = array.combine_chunks()
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array = array.view(pyarrow.timestamp("ns"))
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np_array = array.to_numpy(zero_copy_only=False)
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return TimeArray(np_array)
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class TimeArray(core.BaseDatetimeArray):
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"""
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Pandas array type containing time data
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"""
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# Data are stored as datetime64 values with a date of Jan 1, 1970
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dtype = TimeDtype()
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@classmethod
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def _datetime(
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cls,
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scalar,
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match_fn=re.compile(
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r"\s*(?P<hours>\d+)"
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r"(?::(?P<minutes>\d+)"
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r"(?::(?P<seconds>\d+)"
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r"(?:\.(?P<fraction>\d*))?)?)?\s*$"
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).match,
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) -> Optional[numpy.datetime64]:
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if isinstance(scalar, numpy.datetime64):
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return scalar
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# Convert pyarrow values to datetime.time.
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if isinstance(scalar, (pyarrow.Time32Scalar, pyarrow.Time64Scalar)):
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scalar = (
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scalar.cast(pyarrow.time64("ns"))
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.cast(pyarrow.int64())
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.cast(pyarrow.timestamp("ns"))
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.as_py()
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)
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if pandas.isna(scalar):
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return numpy.datetime64("NaT")
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if isinstance(scalar, datetime.time):
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return pandas.Timestamp(
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year=1970,
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month=1,
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day=1,
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hour=scalar.hour,
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minute=scalar.minute,
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second=scalar.second,
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microsecond=scalar.microsecond,
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).to_datetime64()
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elif isinstance(scalar, pandas.Timestamp):
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return scalar.to_datetime64()
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elif isinstance(scalar, str):
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# iso string
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parsed = match_fn(scalar)
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if not parsed:
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raise ValueError(f"Bad time string: {repr(scalar)}")
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hour = parsed.group("hours")
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minute = parsed.group("minutes")
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second = parsed.group("seconds")
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fraction = parsed.group("fraction")
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nanosecond = int(fraction.ljust(9, "0")[:9]) if fraction else 0
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return pandas.Timestamp(
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year=1970,
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month=1,
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day=1,
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hour=int(hour),
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minute=int(minute) if minute else 0,
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second=int(second) if second else 0,
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microsecond=nanosecond // 1000,
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nanosecond=nanosecond % 1000,
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).to_datetime64()
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else:
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raise TypeError("Invalid value type", scalar)
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def _box_func(self, x):
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if pandas.isna(x):
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return pandas.NaT
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try:
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return x.astype(_NP_BOX_DTYPE).item().time()
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except AttributeError:
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x = numpy.datetime64(
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x, "ns"
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) # Integers are stored with nanosecond precision.
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return x.astype(_NP_BOX_DTYPE).item().time()
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__return_deltas = {"timedelta", "timedelta64", "timedelta64[ns]", "<m8", _NP_DTYPE}
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def astype(self, dtype, copy=True):
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deltas = self._ndarray - _NPEPOCH
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stype = str(dtype)
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if stype in self.__return_deltas:
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return deltas
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elif stype.startswith("timedelta64[") or stype.startswith("<m8["):
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return deltas.astype(dtype, copy=False)
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else:
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return super().astype(dtype, copy=copy)
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def __arrow_array__(self, type=None):
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"""Convert to an Arrow array from dbtime data.
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See:
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https://pandas.pydata.org/pandas-docs/stable/development/extending.html#compatibility-with-apache-arrow
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"""
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array = pyarrow.array(self._ndarray, type=pyarrow.timestamp("ns"))
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# ChunkedArray has no "view" method, so combine into an Array.
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array = (
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array.combine_chunks() if isinstance(array, pyarrow.ChunkedArray) else array
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)
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# We can't cast to time64("ns"), but timestamp("ns") has the same
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# memory layout: 64-bit integers representing the number of nanoseconds
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# since the datetime epoch (midnight 1970-01-01).
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array = array.view(pyarrow.time64("ns"))
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return pyarrow.compute.cast(
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array,
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type if type is not None else pyarrow.time64("ns"),
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)
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@pandas.api.extensions.register_extension_dtype
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class DateDtype(core.BaseDatetimeDtype):
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"""
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Extension dtype for time data.
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"""
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name = date_dtype_name
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type = datetime.date
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def construct_array_type(self):
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return DateArray
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@staticmethod
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def __from_arrow__(
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array: Union[pyarrow.Array, pyarrow.ChunkedArray]
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) -> "DateArray":
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"""Convert to dbdate data from an Arrow array.
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See:
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https://pandas.pydata.org/pandas-docs/stable/development/extending.html#compatibility-with-apache-arrow
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"""
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array = pyarrow.compute.cast(array, pyarrow.timestamp("ns"))
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np_array = array.to_numpy()
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return DateArray(np_array)
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class DateArray(core.BaseDatetimeArray):
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"""
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Pandas array type containing date data
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"""
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# Data are stored as datetime64 values with a date of Jan 1, 1970
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dtype = DateDtype()
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@staticmethod
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def _datetime(
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scalar,
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match_fn=re.compile(r"\s*(?P<year>\d+)-(?P<month>\d+)-(?P<day>\d+)\s*$").match,
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) -> Optional[numpy.datetime64]:
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# Convert pyarrow values to datetime.date.
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if isinstance(scalar, (pyarrow.Date32Scalar, pyarrow.Date64Scalar)):
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scalar = scalar.as_py()
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if pandas.isna(scalar):
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return numpy.datetime64("NaT")
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elif isinstance(scalar, numpy.datetime64):
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dateObj = pandas.Timestamp(scalar)
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elif isinstance(scalar, datetime.date):
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dateObj = pandas.Timestamp(
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year=scalar.year, month=scalar.month, day=scalar.day
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)
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elif isinstance(scalar, str):
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match = match_fn(scalar)
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if not match:
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raise ValueError(f"Bad date string: {repr(scalar)}")
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year = int(match.group("year"))
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month = int(match.group("month"))
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day = int(match.group("day"))
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dateObj = pandas.Timestamp(
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year=year,
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month=month,
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day=day,
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)
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else:
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raise TypeError("Invalid value type", scalar)
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# TODO(#64): Support larger ranges with other units.
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if pandas.Timestamp.min < dateObj < pandas.Timestamp.max:
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return dateObj.to_datetime64()
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else: # pragma: NO COVER
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# TODO(#166): Include these lines in coverage when pandas 2.0 is released.
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raise OutOfBoundsDatetime("Out of bounds", scalar) # pragma: NO COVER
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def _box_func(self, x):
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if pandas.isna(x):
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return pandas.NaT
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try:
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return x.astype(_NP_BOX_DTYPE).item().date()
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except AttributeError:
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x = numpy.datetime64(
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x, "ns"
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) # Integers are stored with nanosecond precision.
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return x.astype(_NP_BOX_DTYPE).item().date()
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def astype(self, dtype, copy=True):
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stype = str(dtype)
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if stype.startswith("datetime"):
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if stype == "datetime" or stype == "datetime64":
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dtype = self._ndarray.dtype
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return self._ndarray.astype(dtype, copy=copy)
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elif stype.startswith("<M8"):
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if stype == "<M8":
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dtype = self._ndarray.dtype
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return self._ndarray.astype(dtype, copy=copy)
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return super().astype(dtype, copy=copy)
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def __arrow_array__(self, type=None):
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"""Convert to an Arrow array from dbdate data.
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See:
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https://pandas.pydata.org/pandas-docs/stable/development/extending.html#compatibility-with-apache-arrow
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"""
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array = pyarrow.array(self._ndarray, type=pyarrow.timestamp("ns"))
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return pyarrow.compute.cast(
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array,
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type if type is not None else pyarrow.date32(),
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)
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def __add__(self, other):
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+
if isinstance(other, pandas.DateOffset):
|
|
320
|
+
return self.astype("object") + other
|
|
321
|
+
|
|
322
|
+
if isinstance(other, TimeArray):
|
|
323
|
+
return (other._ndarray - _NPEPOCH) + self._ndarray
|
|
324
|
+
|
|
325
|
+
return super().__add__(other)
|
|
326
|
+
|
|
327
|
+
def __radd__(self, other):
|
|
328
|
+
return self.__add__(other)
|
|
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|
+
|
|
330
|
+
def __sub__(self, other):
|
|
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|
+
if isinstance(other, pandas.DateOffset):
|
|
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|
+
return self.astype("object") - other
|
|
333
|
+
|
|
334
|
+
if isinstance(other, self.__class__):
|
|
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|
+
return self._ndarray - other._ndarray
|
|
336
|
+
|
|
337
|
+
return super().__sub__(other)
|
|
338
|
+
|
|
339
|
+
|
|
340
|
+
def _check_python_version():
|
|
341
|
+
"""Checks the runtime Python version and issues a warning if needed."""
|
|
342
|
+
sys_major, sys_minor, sys_micro = _versions_helpers.extract_runtime_version()
|
|
343
|
+
if sys_major == 3 and sys_minor in (7, 8):
|
|
344
|
+
warnings.warn(
|
|
345
|
+
"The python-bigquery library as well as the python-db-dtypes-pandas library no "
|
|
346
|
+
"longer supports Python 3.7 and Python 3.8. "
|
|
347
|
+
f"Your Python version is {sys_major}.{sys_minor}.{sys_micro}. We "
|
|
348
|
+
"recommend that you update soon to ensure ongoing support. For "
|
|
349
|
+
"more details, see: [Google Cloud Client Libraries Supported Python Versions policy](https://cloud.google.com/python/docs/supported-python-versions)",
|
|
350
|
+
FutureWarning,
|
|
351
|
+
stacklevel=2, # Point warning to the caller of __init__
|
|
352
|
+
)
|
|
353
|
+
|
|
354
|
+
|
|
355
|
+
_check_python_version()
|
|
356
|
+
|
|
357
|
+
__all__ = [
|
|
358
|
+
"__version__",
|
|
359
|
+
"DateArray",
|
|
360
|
+
"DateDtype",
|
|
361
|
+
"TimeArray",
|
|
362
|
+
"TimeDtype",
|
|
363
|
+
"JSONDtype",
|
|
364
|
+
"JSONArray",
|
|
365
|
+
"JSONArrowType",
|
|
366
|
+
]
|
|
@@ -0,0 +1,32 @@
|
|
|
1
|
+
# Copyright 2024 Google LLC
|
|
2
|
+
#
|
|
3
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
4
|
+
# you may not use this file except in compliance with the License.
|
|
5
|
+
# You may obtain a copy of the License at
|
|
6
|
+
#
|
|
7
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
|
8
|
+
#
|
|
9
|
+
# Unless required by applicable law or agreed to in writing, software
|
|
10
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
11
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
12
|
+
# See the License for the specific language governing permissions and
|
|
13
|
+
# limitations under the License.
|
|
14
|
+
|
|
15
|
+
"""Shared helper functions for verifying versions of installed modules."""
|
|
16
|
+
|
|
17
|
+
|
|
18
|
+
import sys
|
|
19
|
+
from typing import Tuple
|
|
20
|
+
|
|
21
|
+
|
|
22
|
+
def extract_runtime_version() -> Tuple[int, int, int]:
|
|
23
|
+
# Retrieve the version information
|
|
24
|
+
version_info = sys.version_info
|
|
25
|
+
|
|
26
|
+
# Extract the major, minor, and micro components
|
|
27
|
+
major = version_info.major
|
|
28
|
+
minor = version_info.minor
|
|
29
|
+
micro = version_info.micro
|
|
30
|
+
|
|
31
|
+
# Display the version number in a clear format
|
|
32
|
+
return major, minor, micro
|
db_dtypes/core.py
ADDED
|
@@ -0,0 +1,195 @@
|
|
|
1
|
+
# Copyright 2021 Google LLC
|
|
2
|
+
#
|
|
3
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
4
|
+
# you may not use this file except in compliance with the License.
|
|
5
|
+
# You may obtain a copy of the License at
|
|
6
|
+
#
|
|
7
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
|
8
|
+
#
|
|
9
|
+
# Unless required by applicable law or agreed to in writing, software
|
|
10
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
11
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
12
|
+
# See the License for the specific language governing permissions and
|
|
13
|
+
# limitations under the License.
|
|
14
|
+
|
|
15
|
+
from typing import Optional
|
|
16
|
+
|
|
17
|
+
import numpy
|
|
18
|
+
import pandas
|
|
19
|
+
import pandas.api.extensions
|
|
20
|
+
from pandas.api.types import is_dtype_equal, is_list_like, is_scalar, pandas_dtype
|
|
21
|
+
from pandas.core.arrays import _mixins
|
|
22
|
+
|
|
23
|
+
from db_dtypes import pandas_backports
|
|
24
|
+
|
|
25
|
+
pandas_release = pandas_backports.pandas_release
|
|
26
|
+
|
|
27
|
+
|
|
28
|
+
class BaseDatetimeDtype(pandas.api.extensions.ExtensionDtype):
|
|
29
|
+
na_value = pandas.NaT
|
|
30
|
+
kind = "O"
|
|
31
|
+
names = None
|
|
32
|
+
|
|
33
|
+
@classmethod
|
|
34
|
+
def construct_from_string(cls, name: str):
|
|
35
|
+
if not isinstance(name, str):
|
|
36
|
+
raise TypeError(
|
|
37
|
+
f"'construct_from_string' expects a string, got {type(name)}"
|
|
38
|
+
)
|
|
39
|
+
|
|
40
|
+
if name != cls.name:
|
|
41
|
+
raise TypeError(f"Cannot construct a '{cls.__name__}' from 'another_type'")
|
|
42
|
+
|
|
43
|
+
return cls()
|
|
44
|
+
|
|
45
|
+
|
|
46
|
+
class BaseDatetimeArray(pandas_backports.OpsMixin, _mixins.NDArrayBackedExtensionArray):
|
|
47
|
+
# scalar used to denote NA value inside our self._ndarray, e.g. -1 for
|
|
48
|
+
# Categorical, iNaT for Period. Outside of object dtype, self.isna() should
|
|
49
|
+
# be exactly locations in self._ndarray with _internal_fill_value. See:
|
|
50
|
+
# https://github.com/pandas-dev/pandas/blob/main/pandas/core/arrays/_mixins.py
|
|
51
|
+
_internal_fill_value = numpy.datetime64("NaT")
|
|
52
|
+
|
|
53
|
+
def __init__(self, values, dtype=None, copy: bool = False):
|
|
54
|
+
if not (
|
|
55
|
+
isinstance(values, numpy.ndarray) and values.dtype == numpy.dtype("<M8[ns]")
|
|
56
|
+
):
|
|
57
|
+
values = self.__ndarray(values)
|
|
58
|
+
elif copy:
|
|
59
|
+
values = values.copy()
|
|
60
|
+
|
|
61
|
+
super().__init__(values=values, dtype=values.dtype)
|
|
62
|
+
|
|
63
|
+
@classmethod
|
|
64
|
+
def __ndarray(cls, scalars):
|
|
65
|
+
return numpy.array(
|
|
66
|
+
[cls._datetime(scalar) for scalar in scalars],
|
|
67
|
+
"M8[ns]",
|
|
68
|
+
)
|
|
69
|
+
|
|
70
|
+
@classmethod
|
|
71
|
+
def _from_sequence(cls, scalars, *, dtype=None, copy=False):
|
|
72
|
+
if dtype is not None:
|
|
73
|
+
assert dtype.__class__ is cls.dtype.__class__
|
|
74
|
+
return cls(cls.__ndarray(scalars))
|
|
75
|
+
|
|
76
|
+
_from_sequence_of_strings = _from_sequence
|
|
77
|
+
|
|
78
|
+
def astype(self, dtype, copy=True):
|
|
79
|
+
dtype = pandas_dtype(dtype)
|
|
80
|
+
if is_dtype_equal(dtype, self.dtype):
|
|
81
|
+
if not copy:
|
|
82
|
+
return self
|
|
83
|
+
else:
|
|
84
|
+
return self.copy()
|
|
85
|
+
|
|
86
|
+
return super().astype(dtype, copy=copy)
|
|
87
|
+
|
|
88
|
+
def _cmp_method(self, other, op):
|
|
89
|
+
"""Compare array values, for use in OpsMixin."""
|
|
90
|
+
|
|
91
|
+
if is_scalar(other) and (
|
|
92
|
+
pandas.isna(other) or isinstance(other, self.dtype.type)
|
|
93
|
+
):
|
|
94
|
+
other = type(self)([other])
|
|
95
|
+
|
|
96
|
+
if type(other) is not type(self):
|
|
97
|
+
return NotImplemented
|
|
98
|
+
|
|
99
|
+
oshape = getattr(other, "shape", None)
|
|
100
|
+
if oshape != self.shape and oshape != (1,) and self.shape != (1,):
|
|
101
|
+
raise TypeError(
|
|
102
|
+
"Can't compare arrays with different shapes", self.shape, oshape
|
|
103
|
+
)
|
|
104
|
+
return op(self._ndarray, other._ndarray)
|
|
105
|
+
|
|
106
|
+
def _from_factorized(self, unique, original):
|
|
107
|
+
return self.__class__(unique)
|
|
108
|
+
|
|
109
|
+
def isna(self):
|
|
110
|
+
return pandas.isna(self._ndarray)
|
|
111
|
+
|
|
112
|
+
def _validate_scalar(self, value):
|
|
113
|
+
"""
|
|
114
|
+
Validate and convert a scalar value to datetime64[ns] for storage in
|
|
115
|
+
backing NumPy array.
|
|
116
|
+
"""
|
|
117
|
+
return self._datetime(value)
|
|
118
|
+
|
|
119
|
+
def _validate_searchsorted_value(self, value):
|
|
120
|
+
"""
|
|
121
|
+
Convert a value for use in searching for a value in the backing numpy array.
|
|
122
|
+
|
|
123
|
+
TODO: With pandas 2.0, this may be unnecessary. https://github.com/pandas-dev/pandas/pull/45544#issuecomment-1052809232
|
|
124
|
+
"""
|
|
125
|
+
return self._validate_setitem_value(value)
|
|
126
|
+
|
|
127
|
+
def _validate_setitem_value(self, value):
|
|
128
|
+
"""
|
|
129
|
+
Convert a value for use in setting a value in the backing numpy array.
|
|
130
|
+
"""
|
|
131
|
+
if is_list_like(value):
|
|
132
|
+
_datetime = self._datetime
|
|
133
|
+
return [_datetime(v) for v in value]
|
|
134
|
+
|
|
135
|
+
return self._datetime(value)
|
|
136
|
+
|
|
137
|
+
def any(
|
|
138
|
+
self,
|
|
139
|
+
*,
|
|
140
|
+
axis: Optional[int] = None,
|
|
141
|
+
out=None,
|
|
142
|
+
keepdims: bool = False,
|
|
143
|
+
skipna: bool = True,
|
|
144
|
+
):
|
|
145
|
+
pandas_backports.numpy_validate_any((), {"out": out, "keepdims": keepdims})
|
|
146
|
+
result = pandas_backports.nanany(self._ndarray, axis=axis, skipna=skipna)
|
|
147
|
+
return result
|
|
148
|
+
|
|
149
|
+
def all(
|
|
150
|
+
self,
|
|
151
|
+
*,
|
|
152
|
+
axis: Optional[int] = None,
|
|
153
|
+
out=None,
|
|
154
|
+
keepdims: bool = False,
|
|
155
|
+
skipna: bool = True,
|
|
156
|
+
):
|
|
157
|
+
pandas_backports.numpy_validate_all((), {"out": out, "keepdims": keepdims})
|
|
158
|
+
result = pandas_backports.nanall(self._ndarray, axis=axis, skipna=skipna)
|
|
159
|
+
return result
|
|
160
|
+
|
|
161
|
+
def min(self, *, axis: Optional[int] = None, skipna: bool = True, **kwargs):
|
|
162
|
+
pandas_backports.numpy_validate_min((), kwargs)
|
|
163
|
+
result = pandas_backports.nanmin(
|
|
164
|
+
values=self._ndarray, axis=axis, mask=self.isna(), skipna=skipna
|
|
165
|
+
)
|
|
166
|
+
if axis is None or self.ndim == 1:
|
|
167
|
+
return self._box_func(result)
|
|
168
|
+
return self._from_backing_data(result)
|
|
169
|
+
|
|
170
|
+
def max(self, *, axis: Optional[int] = None, skipna: bool = True, **kwargs):
|
|
171
|
+
pandas_backports.numpy_validate_max((), kwargs)
|
|
172
|
+
result = pandas_backports.nanmax(
|
|
173
|
+
values=self._ndarray, axis=axis, mask=self.isna(), skipna=skipna
|
|
174
|
+
)
|
|
175
|
+
if axis is None or self.ndim == 1:
|
|
176
|
+
return self._box_func(result)
|
|
177
|
+
return self._from_backing_data(result)
|
|
178
|
+
|
|
179
|
+
def median(
|
|
180
|
+
self,
|
|
181
|
+
*,
|
|
182
|
+
axis: Optional[int] = None,
|
|
183
|
+
out=None,
|
|
184
|
+
overwrite_input: bool = False,
|
|
185
|
+
keepdims: bool = False,
|
|
186
|
+
skipna: bool = True,
|
|
187
|
+
):
|
|
188
|
+
pandas_backports.numpy_validate_median(
|
|
189
|
+
(),
|
|
190
|
+
{"out": out, "overwrite_input": overwrite_input, "keepdims": keepdims},
|
|
191
|
+
)
|
|
192
|
+
result = pandas_backports.nanmedian(self._ndarray, axis=axis, skipna=skipna)
|
|
193
|
+
if axis is None or self.ndim == 1:
|
|
194
|
+
return self._box_func(result)
|
|
195
|
+
return self._from_backing_data(result)
|
db_dtypes/json.py
ADDED
|
@@ -0,0 +1,281 @@
|
|
|
1
|
+
# Copyright 2024 Google LLC
|
|
2
|
+
#
|
|
3
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
4
|
+
# you may not use this file except in compliance with the License.
|
|
5
|
+
# You may obtain a copy of the License at
|
|
6
|
+
#
|
|
7
|
+
# https://www.apache.org/licenses/LICENSE-2.0
|
|
8
|
+
#
|
|
9
|
+
# Unless required by applicable law or agreed to in writing, software
|
|
10
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
11
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
12
|
+
# See the License for the specific language governing permissions and
|
|
13
|
+
# limitations under the License.
|
|
14
|
+
|
|
15
|
+
from __future__ import annotations
|
|
16
|
+
|
|
17
|
+
import json
|
|
18
|
+
|
|
19
|
+
import numpy as np
|
|
20
|
+
import pandas as pd
|
|
21
|
+
import pandas.arrays as arrays
|
|
22
|
+
import pandas.core.dtypes.common as common
|
|
23
|
+
import pandas.core.indexers as indexers
|
|
24
|
+
import pyarrow as pa
|
|
25
|
+
import pyarrow.compute
|
|
26
|
+
|
|
27
|
+
|
|
28
|
+
@pd.api.extensions.register_extension_dtype
|
|
29
|
+
class JSONDtype(pd.api.extensions.ExtensionDtype):
|
|
30
|
+
"""Extension dtype for BigQuery JSON data."""
|
|
31
|
+
|
|
32
|
+
name = "dbjson"
|
|
33
|
+
|
|
34
|
+
@property
|
|
35
|
+
def na_value(self) -> pd.NA:
|
|
36
|
+
"""Default NA value to use for this type."""
|
|
37
|
+
return pd.NA
|
|
38
|
+
|
|
39
|
+
@property
|
|
40
|
+
def type(self) -> type[str]:
|
|
41
|
+
"""
|
|
42
|
+
Return the scalar type for the array elements.
|
|
43
|
+
The standard JSON data types can be one of `dict`, `list`, `str`, `int`, `float`,
|
|
44
|
+
`bool` and `None`. However, this method returns a `str` type to indicate its
|
|
45
|
+
storage type, because the union of multiple types are not supported well in pandas.
|
|
46
|
+
"""
|
|
47
|
+
return str
|
|
48
|
+
|
|
49
|
+
@property
|
|
50
|
+
def pyarrow_dtype(self):
|
|
51
|
+
"""Return the pyarrow data type used for storing data in the pyarrow array."""
|
|
52
|
+
return pa.string()
|
|
53
|
+
|
|
54
|
+
@property
|
|
55
|
+
def _is_numeric(self) -> bool:
|
|
56
|
+
return False
|
|
57
|
+
|
|
58
|
+
@property
|
|
59
|
+
def _is_boolean(self) -> bool:
|
|
60
|
+
return False
|
|
61
|
+
|
|
62
|
+
@classmethod
|
|
63
|
+
def construct_array_type(cls):
|
|
64
|
+
"""Return the array type associated with this dtype."""
|
|
65
|
+
return JSONArray
|
|
66
|
+
|
|
67
|
+
def __from_arrow__(self, array: pa.Array | pa.ChunkedArray) -> JSONArray:
|
|
68
|
+
"""Convert the pyarrow array to the extension array."""
|
|
69
|
+
return JSONArray(array)
|
|
70
|
+
|
|
71
|
+
|
|
72
|
+
class JSONArray(arrays.ArrowExtensionArray):
|
|
73
|
+
"""Extension array that handles BigQuery JSON data, leveraging a string-based
|
|
74
|
+
pyarrow array for storage. It enables seamless conversion to JSON objects when
|
|
75
|
+
accessing individual elements."""
|
|
76
|
+
|
|
77
|
+
_dtype = JSONDtype()
|
|
78
|
+
|
|
79
|
+
def __init__(self, values) -> None:
|
|
80
|
+
super().__init__(values)
|
|
81
|
+
self._dtype = JSONDtype()
|
|
82
|
+
if isinstance(values, pa.Array):
|
|
83
|
+
pa_data = pa.chunked_array([values])
|
|
84
|
+
elif isinstance(values, pa.ChunkedArray):
|
|
85
|
+
pa_data = values
|
|
86
|
+
else:
|
|
87
|
+
raise NotImplementedError(
|
|
88
|
+
f"Unsupported type '{type(values)}' for JSONArray"
|
|
89
|
+
)
|
|
90
|
+
|
|
91
|
+
# Ensures compatibility with pandas version 1.5.3
|
|
92
|
+
if hasattr(self, "_data"):
|
|
93
|
+
self._data = pa_data
|
|
94
|
+
elif hasattr(self, "_pa_array"):
|
|
95
|
+
self._pa_array = pa_data
|
|
96
|
+
else:
|
|
97
|
+
raise NotImplementedError(f"Unsupported pandas version: {pd.__version__}")
|
|
98
|
+
|
|
99
|
+
def __arrow_array__(self, type=None):
|
|
100
|
+
"""Convert to an arrow array. This is required for pyarrow extension."""
|
|
101
|
+
return pa.array(self.pa_data, type=JSONArrowType())
|
|
102
|
+
|
|
103
|
+
@classmethod
|
|
104
|
+
def _box_pa(
|
|
105
|
+
cls, value, pa_type: pa.DataType | None = None
|
|
106
|
+
) -> pa.Array | pa.ChunkedArray | pa.Scalar:
|
|
107
|
+
"""Box value into a pyarrow Array, ChunkedArray or Scalar."""
|
|
108
|
+
assert pa_type is None or pa_type == cls._dtype.pyarrow_dtype
|
|
109
|
+
|
|
110
|
+
if isinstance(value, pa.Scalar) or not (
|
|
111
|
+
common.is_list_like(value) and not common.is_dict_like(value)
|
|
112
|
+
):
|
|
113
|
+
return cls._box_pa_scalar(value)
|
|
114
|
+
return cls._box_pa_array(value)
|
|
115
|
+
|
|
116
|
+
@classmethod
|
|
117
|
+
def _box_pa_scalar(cls, value) -> pa.Scalar:
|
|
118
|
+
"""Box value into a pyarrow Scalar."""
|
|
119
|
+
if pd.isna(value):
|
|
120
|
+
pa_scalar = pa.scalar(None, type=cls._dtype.pyarrow_dtype)
|
|
121
|
+
else:
|
|
122
|
+
value = JSONArray._serialize_json(value)
|
|
123
|
+
pa_scalar = pa.scalar(
|
|
124
|
+
value, type=cls._dtype.pyarrow_dtype, from_pandas=True
|
|
125
|
+
)
|
|
126
|
+
|
|
127
|
+
return pa_scalar
|
|
128
|
+
|
|
129
|
+
@classmethod
|
|
130
|
+
def _box_pa_array(cls, value, copy: bool = False) -> pa.Array | pa.ChunkedArray:
|
|
131
|
+
"""Box value into a pyarrow Array or ChunkedArray."""
|
|
132
|
+
if isinstance(value, cls):
|
|
133
|
+
pa_array = value.pa_data
|
|
134
|
+
else:
|
|
135
|
+
value = [JSONArray._serialize_json(x) for x in value]
|
|
136
|
+
pa_array = pa.array(value, type=cls._dtype.pyarrow_dtype, from_pandas=True)
|
|
137
|
+
return pa_array
|
|
138
|
+
|
|
139
|
+
@classmethod
|
|
140
|
+
def _from_sequence(cls, scalars, *, dtype=None, copy=False):
|
|
141
|
+
"""Construct a new ExtensionArray from a sequence of scalars."""
|
|
142
|
+
pa_array = cls._box_pa(scalars)
|
|
143
|
+
arr = cls(pa_array)
|
|
144
|
+
return arr
|
|
145
|
+
|
|
146
|
+
@staticmethod
|
|
147
|
+
def _serialize_json(value):
|
|
148
|
+
"""A static method that converts a JSON value into a string representation."""
|
|
149
|
+
if not common.is_list_like(value) and pd.isna(value):
|
|
150
|
+
return value
|
|
151
|
+
else:
|
|
152
|
+
# `sort_keys=True` sorts dictionary keys before serialization, making
|
|
153
|
+
# JSON comparisons deterministic.
|
|
154
|
+
# `separators=(',', ':')` eliminate whitespace to get the most compact
|
|
155
|
+
# JSON representation.
|
|
156
|
+
return json.dumps(value, sort_keys=True, separators=(",", ":"))
|
|
157
|
+
|
|
158
|
+
@staticmethod
|
|
159
|
+
def _deserialize_json(value):
|
|
160
|
+
"""A static method that converts a JSON string back into its original value."""
|
|
161
|
+
if not pd.isna(value):
|
|
162
|
+
return json.loads(value)
|
|
163
|
+
else:
|
|
164
|
+
return value
|
|
165
|
+
|
|
166
|
+
@property
|
|
167
|
+
def dtype(self) -> JSONDtype:
|
|
168
|
+
"""An instance of JSONDtype"""
|
|
169
|
+
return self._dtype
|
|
170
|
+
|
|
171
|
+
@property
|
|
172
|
+
def pa_data(self):
|
|
173
|
+
"""An instance of stored pa data"""
|
|
174
|
+
# Ensures compatibility with pandas version 1.5.3
|
|
175
|
+
if hasattr(self, "_data"):
|
|
176
|
+
return self._data
|
|
177
|
+
elif hasattr(self, "_pa_array"):
|
|
178
|
+
return self._pa_array
|
|
179
|
+
else:
|
|
180
|
+
raise NotImplementedError(f"Unsupported pandas version: {pd.__version__}")
|
|
181
|
+
|
|
182
|
+
def _cmp_method(self, other, op):
|
|
183
|
+
if op.__name__ == "eq":
|
|
184
|
+
result = pyarrow.compute.equal(self.pa_data, self._box_pa(other))
|
|
185
|
+
elif op.__name__ == "ne":
|
|
186
|
+
result = pyarrow.compute.not_equal(self.pa_data, self._box_pa(other))
|
|
187
|
+
else:
|
|
188
|
+
# Comparison is not a meaningful one. We don't want to support sorting by JSON columns.
|
|
189
|
+
raise TypeError(f"{op.__name__} not supported for JSONArray")
|
|
190
|
+
return arrays.ArrowExtensionArray(result)
|
|
191
|
+
|
|
192
|
+
def __getitem__(self, item):
|
|
193
|
+
"""Select a subset of self."""
|
|
194
|
+
item = indexers.check_array_indexer(self, item)
|
|
195
|
+
|
|
196
|
+
if isinstance(item, np.ndarray):
|
|
197
|
+
if not len(item):
|
|
198
|
+
return type(self)(pa.chunked_array([], type=self.dtype.pyarrow_dtype))
|
|
199
|
+
elif item.dtype.kind in "iu":
|
|
200
|
+
return self.take(item)
|
|
201
|
+
else:
|
|
202
|
+
# `check_array_indexer` should verify that the assertion hold true.
|
|
203
|
+
assert item.dtype.kind == "b"
|
|
204
|
+
return type(self)(self.pa_data.filter(item))
|
|
205
|
+
elif isinstance(item, tuple):
|
|
206
|
+
item = indexers.unpack_tuple_and_ellipses(item)
|
|
207
|
+
|
|
208
|
+
if common.is_scalar(item) and not common.is_integer(item):
|
|
209
|
+
# e.g. "foo" or 2.5
|
|
210
|
+
# exception message copied from numpy
|
|
211
|
+
raise IndexError(
|
|
212
|
+
r"only integers, slices (`:`), ellipsis (`...`), numpy.newaxis "
|
|
213
|
+
r"(`None`) and integer or boolean arrays are valid indices"
|
|
214
|
+
)
|
|
215
|
+
|
|
216
|
+
value = self.pa_data[item]
|
|
217
|
+
if isinstance(value, pa.ChunkedArray):
|
|
218
|
+
return type(self)(value)
|
|
219
|
+
elif isinstance(value, pa.ExtensionScalar):
|
|
220
|
+
return value.as_py()
|
|
221
|
+
else:
|
|
222
|
+
scalar = JSONArray._deserialize_json(value.as_py())
|
|
223
|
+
if scalar is None:
|
|
224
|
+
return self._dtype.na_value
|
|
225
|
+
else:
|
|
226
|
+
return scalar
|
|
227
|
+
|
|
228
|
+
def __iter__(self):
|
|
229
|
+
"""Iterate over elements of the array."""
|
|
230
|
+
for value in self.pa_data:
|
|
231
|
+
val = JSONArray._deserialize_json(value.as_py())
|
|
232
|
+
if val is None:
|
|
233
|
+
yield self._dtype.na_value
|
|
234
|
+
else:
|
|
235
|
+
yield val
|
|
236
|
+
|
|
237
|
+
def _reduce(
|
|
238
|
+
self, name: str, *, skipna: bool = True, keepdims: bool = False, **kwargs
|
|
239
|
+
):
|
|
240
|
+
"""Return a scalar result of performing the reduction operation."""
|
|
241
|
+
if name in ["min", "max"]:
|
|
242
|
+
raise TypeError("JSONArray does not support min/max reducntion.")
|
|
243
|
+
super()._reduce(name, skipna=skipna, keepdims=keepdims, **kwargs)
|
|
244
|
+
|
|
245
|
+
def __array__(self, dtype=None, copy: bool | None = None) -> np.ndarray:
|
|
246
|
+
"""Correctly construct numpy arrays when passed to `np.asarray()`."""
|
|
247
|
+
pa_type = self.pa_data.type
|
|
248
|
+
data = self
|
|
249
|
+
if dtype is None:
|
|
250
|
+
empty = pa.array([], type=pa_type).to_numpy(zero_copy_only=False)
|
|
251
|
+
dtype = empty.dtype
|
|
252
|
+
result = np.empty(len(data), dtype=dtype)
|
|
253
|
+
mask = data.isna()
|
|
254
|
+
result[mask] = self._dtype.na_value
|
|
255
|
+
result[~mask] = data[~mask].pa_data.to_numpy()
|
|
256
|
+
return result
|
|
257
|
+
|
|
258
|
+
|
|
259
|
+
class JSONArrowType(pa.ExtensionType):
|
|
260
|
+
"""Arrow extension type for the `dbjson` Pandas extension type."""
|
|
261
|
+
|
|
262
|
+
def __init__(self) -> None:
|
|
263
|
+
super().__init__(pa.string(), "dbjson")
|
|
264
|
+
|
|
265
|
+
def __arrow_ext_serialize__(self) -> bytes:
|
|
266
|
+
return b""
|
|
267
|
+
|
|
268
|
+
@classmethod
|
|
269
|
+
def __arrow_ext_deserialize__(cls, storage_type, serialized) -> JSONArrowType:
|
|
270
|
+
return JSONArrowType()
|
|
271
|
+
|
|
272
|
+
def __hash__(self) -> int:
|
|
273
|
+
return hash(str(self))
|
|
274
|
+
|
|
275
|
+
def to_pandas_dtype(self):
|
|
276
|
+
return JSONDtype()
|
|
277
|
+
|
|
278
|
+
|
|
279
|
+
# Register the type to be included in RecordBatches, sent over IPC and received in
|
|
280
|
+
# another Python process.
|
|
281
|
+
pa.register_extension_type(JSONArrowType())
|
|
@@ -0,0 +1,74 @@
|
|
|
1
|
+
# Copyright 2021 Google LLC
|
|
2
|
+
#
|
|
3
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
4
|
+
# you may not use this file except in compliance with the License.
|
|
5
|
+
# You may obtain a copy of the License at
|
|
6
|
+
#
|
|
7
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
|
8
|
+
#
|
|
9
|
+
# Unless required by applicable law or agreed to in writing, software
|
|
10
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
11
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
12
|
+
# See the License for the specific language governing permissions and
|
|
13
|
+
# limitations under the License.
|
|
14
|
+
|
|
15
|
+
"""
|
|
16
|
+
Utilities to support older pandas versions.
|
|
17
|
+
|
|
18
|
+
These backported versions are simpler and, in some cases, less featureful than
|
|
19
|
+
the versions in the later versions of pandas.
|
|
20
|
+
"""
|
|
21
|
+
|
|
22
|
+
import packaging.version
|
|
23
|
+
import pandas
|
|
24
|
+
import pandas.compat.numpy.function
|
|
25
|
+
|
|
26
|
+
pandas_release = packaging.version.parse(pandas.__version__).release
|
|
27
|
+
|
|
28
|
+
# # Create aliases for private methods in case they move in a future version.
|
|
29
|
+
nanall = pandas.core.nanops.nanall
|
|
30
|
+
nanany = pandas.core.nanops.nanany
|
|
31
|
+
nanmax = pandas.core.nanops.nanmax
|
|
32
|
+
nanmin = pandas.core.nanops.nanmin
|
|
33
|
+
numpy_validate_all = pandas.compat.numpy.function.validate_all
|
|
34
|
+
numpy_validate_any = pandas.compat.numpy.function.validate_any
|
|
35
|
+
numpy_validate_max = pandas.compat.numpy.function.validate_max
|
|
36
|
+
numpy_validate_min = pandas.compat.numpy.function.validate_min
|
|
37
|
+
|
|
38
|
+
nanmedian = pandas.core.nanops.nanmedian
|
|
39
|
+
numpy_validate_median = pandas.compat.numpy.function.validate_median
|
|
40
|
+
|
|
41
|
+
|
|
42
|
+
def import_default(module_name, force=False, default=None):
|
|
43
|
+
"""
|
|
44
|
+
Provide an implementation for a class or function when it can't be imported
|
|
45
|
+
|
|
46
|
+
or when force is True.
|
|
47
|
+
|
|
48
|
+
This is used to replicate Pandas APIs that are missing or insufficient
|
|
49
|
+
(thus the force option) in early pandas versions.
|
|
50
|
+
"""
|
|
51
|
+
|
|
52
|
+
if default is None:
|
|
53
|
+
return lambda func_or_class: import_default(module_name, force, func_or_class)
|
|
54
|
+
|
|
55
|
+
if force:
|
|
56
|
+
return default
|
|
57
|
+
|
|
58
|
+
name = default.__name__
|
|
59
|
+
try:
|
|
60
|
+
module = __import__(module_name, {}, {}, [name])
|
|
61
|
+
except ModuleNotFoundError:
|
|
62
|
+
return default
|
|
63
|
+
|
|
64
|
+
return getattr(module, name, default)
|
|
65
|
+
|
|
66
|
+
|
|
67
|
+
# pandas.core.arraylike.OpsMixin is private, but the related public API
|
|
68
|
+
# "ExtensionScalarOpsMixin" is not sufficient for adding dates to times.
|
|
69
|
+
# It results in unsupported operand type(s) for +: 'datetime.time' and
|
|
70
|
+
# 'datetime.date'
|
|
71
|
+
@import_default("pandas.core.arraylike")
|
|
72
|
+
class OpsMixin:
|
|
73
|
+
def _cmp_method(self, other, op): # pragma: NO COVER
|
|
74
|
+
return NotImplemented
|
db_dtypes/version.py
ADDED
|
@@ -0,0 +1,15 @@
|
|
|
1
|
+
# Copyright 2021 Google LLC
|
|
2
|
+
#
|
|
3
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
4
|
+
# you may not use this file except in compliance with the License.
|
|
5
|
+
# You may obtain a copy of the License at
|
|
6
|
+
#
|
|
7
|
+
# https://www.apache.org/licenses/LICENSE-2.0
|
|
8
|
+
#
|
|
9
|
+
# Unless required by applicable law or agreed to in writing, software
|
|
10
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
11
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
12
|
+
# See the License for the specific language governing permissions and
|
|
13
|
+
# limitations under the License.
|
|
14
|
+
|
|
15
|
+
__version__ = "1.4.3" # pragma: NO COVER
|
|
@@ -0,0 +1,9 @@
|
|
|
1
|
+
# This is the list of db-dtypes's significant contributors.
|
|
2
|
+
#
|
|
3
|
+
# This does not necessarily list everyone who has contributed code,
|
|
4
|
+
# especially since many employees of one corporation may be contributing.
|
|
5
|
+
# To see the full list of contributors, see the revision history in
|
|
6
|
+
# source control.
|
|
7
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Metadata-Version: 2.1
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Name: db-dtypes
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Version: 1.4.3
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Summary: Pandas Data Types for SQL systems (BigQuery, Spanner)
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Home-page: https://github.com/googleapis/python-db-dtypes-pandas
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Author: The db-dtypes Authors
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Author-email: googleapis-packages@google.com
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Keywords: sql,pandas
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Platform: Posix; MacOS X; Windows
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Classifier: Development Status :: 5 - Production/Stable
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Classifier: Intended Audience :: Developers
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Classifier: License :: OSI Approved :: Apache Software License
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Classifier: Programming Language :: Python
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.9
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Classifier: Programming Language :: Python :: 3.13
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Classifier: Operating System :: OS Independent
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Classifier: Topic :: Database :: Front-Ends
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=====================================================
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|ga| |pypi| |versions|
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`Pandas extension data types`_ for data from SQL systems such as `BigQuery`_.
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- `Library Documentation`_
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:target: https://github.com/googleapis/google-cloud-python/blob/main/README.rst#general-availability
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:target: https://pypi.org/project/db-dtypes/
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:target: https://pypi.org/project/db-dtypes/
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.. _Pandas extension data types: https://pandas.pydata.org/docs/development/extending.html#extension-types
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.. _BigQuery: https://cloud.google.com/bigquery/docs/
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Installation
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------------
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Python >= 3.9
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5
|
+
db_dtypes/pandas_backports.py,sha256=ZIQsNY-Nz1gbAgMSu2034XTLk-ZEGKgmU4S71JShGps,2521
|
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6
|
+
db_dtypes/version.py,sha256=RGho-Ro8RZTtDee-enRlIndtWLt_3udMRn1zWdA3-9o,618
|
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7
|
+
db_dtypes-1.4.3.dist-info/AUTHORS,sha256=ZzwnqDCA5-5_W_beU6-64JXYg_8IyNUp7aHfvZHowmI,331
|
|
8
|
+
db_dtypes-1.4.3.dist-info/LICENSE,sha256=z8d0m5b2O9McPEK1xHG_dWgUBT6EfBDz6wA0F7xSPTA,11358
|
|
9
|
+
db_dtypes-1.4.3.dist-info/METADATA,sha256=waf9H7MnIJDqMFXu6U6sp0k52U5WFQ8SIeve3G4ZjH4,2970
|
|
10
|
+
db_dtypes-1.4.3.dist-info/WHEEL,sha256=P9jw-gEje8ByB7_hXoICnHtVCrEwMQh-630tKvQWehc,91
|
|
11
|
+
db_dtypes-1.4.3.dist-info/top_level.txt,sha256=Lzrj78HENTzHjW4Xb-xOlAuHlAgu4z8nG9NrXPqZKJk,10
|
|
12
|
+
db_dtypes-1.4.3.dist-info/RECORD,,
|
|
@@ -0,0 +1 @@
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1
|
+
db_dtypes
|