dayhoff-tools 1.3.17__py3-none-any.whl → 1.3.18__py3-none-any.whl

dayhoff_tools/cli/engine_commands.py

@@ -582,8 +582,9 @@ def list_engines(
 @engine_app.command("status")
 def engine_status(
     name_or_id: str = typer.Argument(help="Engine name or instance ID"),
+    show_log: bool = typer.Option(False, "--show-log", help="Show bootstrap log"),
 ):
-    """Show detailed status of an engine."""
+    """Show detailed engine status and information."""
     check_aws_sso()
 
     # Get all engines to resolve name
@@ -655,12 +656,30 @@ def engine_status(
                 f"  • {studio['user']} ({studio['studio_id']}) - attached {attach_time}"
             )
 
-    panel = Panel(
-        "\n".join(status_lines),
-        title="Engine Details",
-        border_style="blue",
-    )
-    console.print(panel)
+    console.print(Panel("\n".join(status_lines), title="Engine Status", border_style="blue"))
+
+    if show_log:
+        console.print("\n[bold]Bootstrap Log:[/bold]")
+        try:
+            ssm = boto3.client("ssm", region_name="us-east-1")
+            resp = ssm.send_command(
+                InstanceIds=[engine["instance_id"]],
+                DocumentName="AWS-RunShellScript",
+                Parameters={"commands": ["cat /var/log/engine-setup.log 2>/dev/null || echo 'No setup log found'"], "executionTimeout": ["15"]},
+            )
+            cid = resp["Command"]["CommandId"]
+            time.sleep(2)
+            inv = ssm.get_command_invocation(CommandId=cid, InstanceId=engine["instance_id"])
+            if inv["Status"] == "Success":
+                log_content = inv["StandardOutputContent"].strip()
+                if log_content:
+                    console.print(f"[dim]{log_content}[/dim]")
+                else:
+                    console.print("[yellow]No bootstrap log available[/yellow]")
+            else:
+                console.print("[red]❌ Could not retrieve bootstrap log[/red]")
+        except Exception as e:
+            console.print(f"[red]❌ Error fetching log: {e}[/red]")
 
 
 @engine_app.command("stop")
@@ -2046,3 +2065,56 @@ def idle_timeout_cmd(
     cid = resp["Command"]["CommandId"]
     time.sleep(2)
     console.print(f"[green]✓ Idle timeout updated to {set}[/green]")
+
+# Add this near the end, after the idle-timeout command
+
+@engine_app.command("debug")
+def debug_engine(
+    name_or_id: str = typer.Argument(help="Engine name or instance ID"),
+):
+    """Debug engine bootstrap status and files."""
+    check_aws_sso()
+
+    # Resolve engine
+    response = make_api_request("GET", "/engines")
+    if response.status_code != 200:
+        console.print("[red]❌ Failed to fetch engines[/red]")
+        raise typer.Exit(1)
+
+    engines = response.json().get("engines", [])
+    engine = resolve_engine(name_or_id, engines)
+
+    console.print(f"[bold]Debug info for {engine['name']}:[/bold]\n")
+
+    ssm = boto3.client("ssm", region_name="us-east-1")
+    
+    # Check multiple files and systemd status
+    checks = [
+        ("Stage file", "cat /var/run/engine-init.stage 2>/dev/null || echo 'MISSING'"),
+        ("Health file", "cat /var/run/engine-health.json 2>/dev/null || echo 'MISSING'"),
+        ("Sentinel file", "ls -la /opt/dayhoff/first_boot_complete.sentinel 2>/dev/null || echo 'MISSING'"),
+        ("Setup service", "systemctl status setup-aws-vm.service --no-pager || echo 'Service not found'"),
+        ("Bootstrap log tail", "tail -20 /var/log/engine-setup.log 2>/dev/null || echo 'No log'"),
+        ("Environment file", "cat /etc/engine.env 2>/dev/null || echo 'MISSING'"),
+    ]
+    
+    for name, cmd in checks:
+        try:
+            resp = ssm.send_command(
+                InstanceIds=[engine["instance_id"]],
+                DocumentName="AWS-RunShellScript",
+                Parameters={"commands": [cmd], "executionTimeout": ["10"]},
+            )
+            cid = resp["Command"]["CommandId"]
+            time.sleep(1)
+            inv = ssm.get_command_invocation(CommandId=cid, InstanceId=engine["instance_id"])
+            
+            if inv["Status"] == "Success":
+                output = inv["StandardOutputContent"].strip()
+                console.print(f"[cyan]{name}:[/cyan]")
+                console.print(f"[dim]{output}[/dim]\n")
+            else:
+                console.print(f"[cyan]{name}:[/cyan] [red]FAILED[/red]\n")
+                
+        except Exception as e:
+            console.print(f"[cyan]{name}:[/cyan] [red]ERROR: {e}[/red]\n")

{dayhoff_tools-1.3.17.dist-info → dayhoff_tools-1.3.18.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: dayhoff-tools
-Version: 1.3.17
+Version: 1.3.18
 Summary: Common tools for all the repos at Dayhoff Labs
 Author: Daniel Martin-Alarcon
 Author-email: dma@dayhofflabs.com

{dayhoff_tools-1.3.17.dist-info → dayhoff_tools-1.3.18.dist-info}/RECORD

@@ -3,7 +3,7 @@ dayhoff_tools/chemistry/standardizer.py,sha256=uMn7VwHnx02nc404eO6fRuS4rsl4dvSPf
 dayhoff_tools/chemistry/utils.py,sha256=jt-7JgF-GeeVC421acX-bobKbLU_X94KNOW24p_P-_M,2257
 dayhoff_tools/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dayhoff_tools/cli/cloud_commands.py,sha256=33qcWLmq-FwEXMdL3F0OHm-5Stlh2r65CldyEZgQ1no,40904
-dayhoff_tools/cli/engine_commands.py,sha256=DlWw8oUzOJqN6uUgsxF5whfY8jfwvBko8hvRm3ZHxVc,75814
+dayhoff_tools/cli/engine_commands.py,sha256=4Z00VAwAaZKv0z1cXimH_JF6UKgGnX4rUawLxfFf8Zs,79197
 dayhoff_tools/cli/main.py,sha256=rgeEHD9lJ8SBCR34BTLb7gVInHUUdmEBNXAJnq5yEU4,4795
 dayhoff_tools/cli/swarm_commands.py,sha256=5EyKj8yietvT5lfoz8Zx0iQvVaNgc3SJX1z2zQR6o6M,5614
 dayhoff_tools/cli/utility_commands.py,sha256=qs8vH9TBFHsOPC3X8cU3qZigM3dDn-2Ytq4o_F2WubU,27874
@@ -27,7 +27,7 @@ dayhoff_tools/intake/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJq
 dayhoff_tools/logs.py,sha256=DKdeP0k0kliRcilwvX0mUB2eipO5BdWUeHwh-VnsICs,838
 dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
 dayhoff_tools/warehouse.py,sha256=8YbnQ--usrEgDQGfvpV4MrMji55A0rq2hZaOgFGh6ag,15896
-dayhoff_tools-1.3.17.dist-info/METADATA,sha256=69jNn8FqivgUWrwrLZ9S-ZEherpCtEHUrBABW5dewWs,2825
-dayhoff_tools-1.3.17.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
-dayhoff_tools-1.3.17.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
-dayhoff_tools-1.3.17.dist-info/RECORD,,
+dayhoff_tools-1.3.18.dist-info/METADATA,sha256=hQN8_0h-PnFGTHJw8p775acWefGqk3y1klZuUkhmJO8,2825
+dayhoff_tools-1.3.18.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
+dayhoff_tools-1.3.18.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
+dayhoff_tools-1.3.18.dist-info/RECORD,,