dayhoff-tools 1.14.1__py3-none-any.whl → 1.14.2__py3-none-any.whl

dayhoff_tools/cli/engines_studios/engine-studio-cli.md

@@ -430,10 +430,13 @@ code tunnel --name my-engine
 - SSH agent forwarding: `-A` flag
 - Config file options: ControlMaster, compression, etc.
 
-**Recommended workflow:**
-1. Run `dh engine2 config-ssh` once after launching engines
-2. Use native `ssh <engine-name>` for all access
-3. Rerun `config-ssh` if you launch new engines
+**Note:** SSH config is automatically updated after `dh engine launch`, `dh engine start`, and `dh studio attach`. You typically don't need to run `config-ssh` manually.
+
+**When to use `config-ssh` manually:**
+- After restarting your terminal/shell
+- If SSH entries are missing for some reason
+- When using `--all` to add other users' engines
+- When using `--admin` for ec2-user access
 
 ---
 
@@ -785,12 +788,17 @@ Attach your studio to an engine with real-time progress tracking through all 6 a
 
 **Usage:**
 ```bash
-dh studio2 attach <engine-name-or-id> [--env <env>]
+dh studio2 attach <engine-name-or-id> [options]
 ```
 
 **Arguments:**
 - `engine-name-or-id` - Engine name or EC2 instance ID
 
+**Options:**
+- `--skip-ssh-config` - Don't automatically update SSH config
+- `--user <username>` - User whose studio to attach (defaults to current user, use for testing/admin)
+- `--env <env>` - Target environment
+
 **Examples:**
 ```bash
 dh studio2 attach my-engine
@@ -811,6 +819,7 @@ Progress ████████████████████ 100%
   Update State
 
 ✓ Studio attached successfully!
+✓ SSH config updated
 
 Your files are now available at:
   /studios/alice/
@@ -819,6 +828,8 @@ Connect with:
   ssh my-engine
 ```
 
+**Note:** SSH config is automatically updated after successful attachment, so you can immediately `ssh my-engine` without running `dh engine config-ssh` first. Use `--skip-ssh-config` to disable this behavior.
+
 **6-step attachment process:**
 1. **Validate Engine** - Ensure engine is ready (~250ms)
 2. **Find Device Slot** - Locate available `/dev/sd[f-p]` (~150ms)
@@ -971,19 +982,16 @@ Reset studio status to 'available'? [y/N]: y
 ### Daily Development
 
 ```bash
-# Launch engine
+# Launch engine (SSH config updated automatically)
 dh engine2 launch dev-work --type cpu
 
-# Add to SSH config
-dh engine2 config-ssh
-
 # Create studio (first time only)
 dh studio2 create --size 100
 
-# Attach studio
+# Attach studio (SSH config updated automatically)
 dh studio2 attach dev-work
 
-# Connect with native SSH
+# Connect with native SSH - works immediately!
 ssh dev-work
 
 # When done, detach and terminate
@@ -994,16 +1002,13 @@ dh engine2 terminate dev-work -y
 ### GPU Training with Coffee Lock
 
 ```bash
-# Launch GPU engine
+# Launch GPU engine (SSH config updated automatically)
 dh engine2 launch training --type a10g
 
-# Add to SSH config
-dh engine2 config-ssh
-
 # Set coffee lock for long job
 dh engine2 coffee training 8h
 
-# Attach and start work
+# Attach and start work (SSH config updated automatically)
 dh studio2 attach training
 ssh training
 
@@ -1017,18 +1022,18 @@ dh engine2 terminate training -y
 ### Multi-Engine Development
 
 ```bash
-# Launch multiple engines
+# Launch multiple engines (each updates SSH config)
 dh engine2 launch frontend --type cpu
 dh engine2 launch backend --type cpu
 dh engine2 launch ml --type t4
 
-# Update SSH config for easy access
-dh engine2 config-ssh
-
-# Now use direct SSH
+# SSH config already updated - connect directly
 ssh frontend
 ssh backend
 ssh ml
+
+# Or manually refresh if needed
+dh engine2 config-ssh
 ```
 
 ### Monitoring Idle Detection

dayhoff_tools/cli/engines_studios/engine_commands.py

@@ -1,7 +1,6 @@
 """Engine CLI commands for engines_studios system."""
 
 import os
-import subprocess
 from typing import Optional
 
 import click
@@ -9,89 +8,7 @@ import click
 from .api_client import StudioManagerClient
 from .auth import check_aws_auth, detect_aws_environment, get_aws_username
 from .progress import format_idle_state, format_time_ago, wait_with_progress
-
-
-def _update_ssh_config_silent(client: StudioManagerClient, env: str) -> bool:
-    """Update SSH config silently. Returns True if successful."""
-    ssh_config_path = os.path.expanduser("~/.ssh/config")
-
-    try:
-        # Read existing config
-        if os.path.exists(ssh_config_path):
-            with open(ssh_config_path, "r") as f:
-                lines = f.readlines()
-        else:
-            lines = []
-
-        # Remove managed entries
-        managed_start = "# BEGIN DAYHOFF ENGINES\n"
-        managed_end = "# END DAYHOFF ENGINES\n"
-
-        new_lines = []
-        skip = False
-        for line in lines:
-            if line == managed_start:
-                skip = True
-            elif line == managed_end:
-                skip = False
-                continue
-            elif not skip:
-                new_lines.append(line)
-
-        # Get engines
-        result = client.list_engines()
-        engines = result.get("engines", [])
-
-        if not engines:
-            return False
-
-        # Generate new entries
-        config_entries = [managed_start]
-
-        try:
-            current_user = get_aws_username()
-        except RuntimeError:
-            # Not authenticated - can't determine user, skip filtering
-            current_user = None
-
-        for engine in engines:
-            user = engine.get("user", "unknown")
-
-            # Skip engines owned by other users (unless user is unknown or we can't determine current user)
-            if current_user and user != "unknown" and user != current_user:
-                continue
-
-            instance_id = engine.get("instance_id")
-            name = engine.get("name", instance_id)
-            state = engine.get("state", "unknown")
-
-            # Only add running engines
-            if state != "running":
-                continue
-
-            # Map environment to AWS profile
-            profile = f"{env}-devaccess"
-
-            config_entries.append(f"\nHost {name}\n")
-            config_entries.append(f"    HostName {instance_id}\n")
-            config_entries.append(f"    User {user}\n")
-            config_entries.append(f"    ForwardAgent yes\n")
-            config_entries.append(
-                f"    ProxyCommand aws ssm start-session --target %h --document-name AWS-StartSSHSession --parameters 'portNumber=%p' --profile {profile}\n"
-            )
-
-        config_entries.append(managed_end)
-
-        # Write back
-        new_lines.extend(config_entries)
-
-        with open(ssh_config_path, "w") as f:
-            f.writelines(new_lines)
-
-        return True
-
-    except Exception:
-        return False
+from .ssh_config import update_ssh_config_silent
 
 
 @click.group()
@@ -207,7 +124,7 @@ def launch_engine(
 
             # Update SSH config unless skipped
             if not skip_ssh_config:
-                if _update_ssh_config_silent(client, env):
+                if update_ssh_config_silent(client, env):
                     click.echo("✓ SSH config updated")
 
             click.echo(f"\nConnect with:")
@@ -215,15 +132,20 @@ def launch_engine(
             click.echo(f"  ssh {name}")
 
         except TimeoutError:
-            click.echo(f"\n⚠ Engine is still initializing. Check status with:")
+            click.echo("\n⚠ Engine is still initializing. Check status with:")
             click.echo(f"  dh engine status {name}")
 
+            # Still update SSH config on timeout - engine is likely running
+            if not skip_ssh_config:
+                if update_ssh_config_silent(client, env):
+                    click.echo("✓ SSH config updated")
+
     except Exception as e:
         error_msg = str(e)
 
         # Check for quota/limit errors
         if "VcpuLimitExceeded" in error_msg or "vCPU limit" in error_msg:
-            click.echo(f"✗ Failed to launch engine: vCPU quota exceeded", err=True)
+            click.echo("✗ Failed to launch engine: vCPU quota exceeded", err=True)
             click.echo("", err=True)
             click.echo(
                 f"The {env} AWS account has insufficient vCPU quota for {engine_type} instances.",
@@ -405,7 +327,7 @@ def start_engine(
 
             # Update SSH config unless skipped
             if not skip_ssh_config:
-                if _update_ssh_config_silent(client, env):
+                if update_ssh_config_silent(client, env):
                     click.echo("✓ SSH config updated")
 
             click.echo(f"\nConnect with:")
@@ -413,9 +335,14 @@ def start_engine(
             click.echo(f"  ssh {engine_name}")
 
         except TimeoutError:
-            click.echo(f"\n⚠ Engine is still starting. Check status with:")
+            click.echo("\n⚠ Engine is still starting. Check status with:")
             click.echo(f"  dh engine status {engine_name}")
 
+            # Still update SSH config on timeout - engine is likely running
+            if not skip_ssh_config:
+                if update_ssh_config_silent(client, env):
+                    click.echo("✓ SSH config updated")
+
     except Exception as e:
         click.echo(f"✗ Error: {e}", err=True)
         raise click.Abort()

dayhoff_tools/cli/engines_studios/ssh_config.py

@@ -0,0 +1,96 @@
+"""SSH config management utilities for engines_studios CLI."""
+
+import os
+from typing import TYPE_CHECKING
+
+if TYPE_CHECKING:
+    from .api_client import StudioManagerClient
+
+
+def update_ssh_config_silent(client: "StudioManagerClient", env: str) -> bool:
+    """Update SSH config with engine entries silently.
+
+    Returns True if successful, False otherwise.
+    Does not raise exceptions - intended for silent background updates.
+    """
+    from .auth import get_aws_username
+
+    ssh_config_path = os.path.expanduser("~/.ssh/config")
+
+    try:
+        # Read existing config
+        if os.path.exists(ssh_config_path):
+            with open(ssh_config_path, "r") as f:
+                lines = f.readlines()
+        else:
+            lines = []
+
+        # Remove managed entries
+        managed_start = "# BEGIN DAYHOFF ENGINES\n"
+        managed_end = "# END DAYHOFF ENGINES\n"
+
+        new_lines = []
+        skip = False
+        for line in lines:
+            if line == managed_start:
+                skip = True
+            elif line == managed_end:
+                skip = False
+                continue
+            elif not skip:
+                new_lines.append(line)
+
+        # Get engines
+        result = client.list_engines()
+        engines = result.get("engines", [])
+
+        if not engines:
+            return False
+
+        # Generate new entries
+        config_entries = [managed_start]
+
+        try:
+            current_user = get_aws_username()
+        except RuntimeError:
+            # Not authenticated - can't determine user, skip filtering
+            current_user = None
+
+        for engine in engines:
+            user = engine.get("user", "unknown")
+
+            # Skip engines owned by other users (unless user is unknown or we can't determine current user)
+            if current_user and user != "unknown" and user != current_user:
+                continue
+
+            instance_id = engine.get("instance_id")
+            name = engine.get("name", instance_id)
+            state = engine.get("state", "unknown")
+
+            # Only add running engines
+            if state != "running":
+                continue
+
+            # Map environment to AWS profile
+            profile = f"{env}-devaccess"
+
+            config_entries.append(f"\nHost {name}\n")
+            config_entries.append(f"    HostName {instance_id}\n")
+            config_entries.append(f"    User {user}\n")
+            config_entries.append(f"    ForwardAgent yes\n")
+            config_entries.append(
+                f"    ProxyCommand aws ssm start-session --target %h --document-name AWS-StartSSHSession --parameters 'portNumber=%p' --profile {profile}\n"
+            )
+
+        config_entries.append(managed_end)
+
+        # Write back
+        new_lines.extend(config_entries)
+
+        with open(ssh_config_path, "w") as f:
+            f.writelines(new_lines)
+
+        return True
+
+    except Exception:
+        return False

dayhoff_tools/cli/engines_studios/studio_commands.py

@@ -1,6 +1,5 @@
 """Studio CLI commands for engines_studios system."""
 
-import os
 from typing import Optional
 
 import click
@@ -8,6 +7,7 @@ import click
 from .api_client import StudioManagerClient
 from .auth import check_aws_auth, detect_aws_environment, get_aws_username
 from .progress import format_time_ago, wait_with_progress
+from .ssh_config import update_ssh_config_silent
 
 
 @click.group()
@@ -420,6 +420,9 @@ def list_studios(env: Optional[str]):
 
 @studio_cli.command("attach")
 @click.argument("engine_name_or_id")
+@click.option(
+    "--skip-ssh-config", is_flag=True, help="Don't automatically update SSH config"
+)
 @click.option(
     "--user",
     default=None,
@@ -430,7 +433,9 @@ def list_studios(env: Optional[str]):
     default=None,
     help="Environment (dev, sand, prod) - auto-detected if not specified",
 )
-def attach_studio(engine_name_or_id: str, user: Optional[str], env: Optional[str]):
+def attach_studio(
+    engine_name_or_id: str, skip_ssh_config: bool, user: Optional[str], env: Optional[str]
+):
     """Attach your studio to an engine with progress tracking."""
 
     # Check AWS auth first to provide clear error messages
@@ -501,6 +506,12 @@ def attach_studio(engine_name_or_id: str, user: Optional[str], env: Optional[str
             )
 
             click.echo(f"\n✓ Studio attached successfully!")
+
+            # Update SSH config unless skipped
+            if not skip_ssh_config:
+                if update_ssh_config_silent(client, env):
+                    click.echo("✓ SSH config updated")
+
             click.echo(f"\nYour files are now available at:")
             click.echo(f"  /studios/{studio['user']}/")
             click.echo(f"\nConnect with:")

dayhoff_tools/cli/main.py

@@ -98,6 +98,20 @@ def studio_cmd(ctx: typer.Context):
     studio_cli(ctx.args, standalone_mode=False)
 
 
+# Batch job management (Click-based CLI)
+@app.command(
+    "batch",
+    context_settings={"allow_extra_args": True, "ignore_unknown_options": True},
+    add_help_option=False,
+)
+def batch_cmd(ctx: typer.Context):
+    """Manage batch jobs on AWS Batch."""
+    from dayhoff_tools.cli.batch import batch_cli
+
+    # Pass arguments directly to Click CLI
+    batch_cli(ctx.args, standalone_mode=False)
+
+
 # Engine and Studio commands (v1 - legacy, uses old infrastructure)
 app.add_typer(engine1_app, name="engine1", help="[Legacy v1] Manage engines.")
 app.add_typer(studio1_app, name="studio1", help="[Legacy v1] Manage studios.")

{dayhoff_tools-1.14.1.dist-info → dayhoff_tools-1.14.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dayhoff-tools
-Version: 1.14.1
+Version: 1.14.2
 Summary: Common tools for all the repos at Dayhoff Labs
 Author: Daniel Martin-Alarcon
 Author-email: dma@dayhofflabs.com
@@ -11,11 +11,14 @@ Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
 Classifier: Programming Language :: Python :: 3.14
+Provides-Extra: batch
+Provides-Extra: boltz
 Provides-Extra: embedders
 Provides-Extra: full
 Requires-Dist: biopython (>=1.84) ; extra == "full"
 Requires-Dist: biopython (>=1.85) ; extra == "embedders"
 Requires-Dist: boto3 (>=1.36.8)
+Requires-Dist: click (>=8.0.0) ; extra == "batch"
 Requires-Dist: docker (>=7.1.0) ; extra == "full"
 Requires-Dist: fair-esm (>=2.0.0) ; extra == "embedders"
 Requires-Dist: fair-esm (>=2.0.0) ; extra == "full"
@@ -25,10 +28,12 @@ Requires-Dist: h5py (>=3.13.0) ; extra == "embedders"
 Requires-Dist: numpy (>=1.26.4) ; extra == "embedders"
 Requires-Dist: pandas (>=2.2.0,<2.2.3) ; extra == "embedders"
 Requires-Dist: pandas (>=2.2.0,<2.2.3) ; extra == "full"
+Requires-Dist: pydantic (>=2.0.0) ; extra == "batch"
 Requires-Dist: pyyaml (>=6.0)
 Requires-Dist: questionary (>=2.0.1)
 Requires-Dist: rdkit-pypi (>=2022.9.5) ; extra == "full"
 Requires-Dist: requests (>=2.31.0)
+Requires-Dist: ruamel.yaml (>=0.17.0) ; extra == "boltz"
 Requires-Dist: sentencepiece (>=0.2.0) ; extra == "embedders"
 Requires-Dist: sentencepiece (>=0.2.0) ; extra == "full"
 Requires-Dist: sqlalchemy (>=2.0.40,<3.0.0) ; extra == "full"

{dayhoff_tools-1.14.1.dist-info → dayhoff_tools-1.14.2.dist-info}/RECORD

@@ -1,7 +1,27 @@
 dayhoff_tools/__init__.py,sha256=M5zThPyEBRYa5CfwlzKhcqTevWn3OKu62cjV6Zqie2A,469
+dayhoff_tools/batch/__init__.py,sha256=N7v1pUg3rp68W6J7cX2Gssxdfp57Z7G0WeFJh7gKeiM,163
+dayhoff_tools/batch/workers/__init__.py,sha256=DJTtiBSE5k9J6qwG_MsXDn8hgz_lvEdaMwqKa6YyqXo,369
+dayhoff_tools/batch/workers/base.py,sha256=eimShYucbCVs8MlLXdtPsxwQRPgXFXqABXIBE5kieJI,4305
+dayhoff_tools/batch/workers/boltz.py,sha256=QTIqMWuV_o3v1tYaZhvjyCl5F65ZlPcc0-TXtitMaFQ,14663
+dayhoff_tools/batch/workers/embed_t5.py,sha256=A5WqsQa1WZ7_la5X5wt0XUP-VwOglH04WyEINhwipeY,2750
 dayhoff_tools/chemistry/standardizer.py,sha256=uMn7VwHnx02nc404eO6fRuS4rsl4dvSPf2ElfZDXEpY,11188
 dayhoff_tools/chemistry/utils.py,sha256=jt-7JgF-GeeVC421acX-bobKbLU_X94KNOW24p_P-_M,2257
 dayhoff_tools/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+dayhoff_tools/cli/batch/__init__.py,sha256=gEuiDPWio8ihrIfF_Q6-5hKOnliPTxDKQrKN8-4Y3Ac,2320
+dayhoff_tools/cli/batch/aws_batch.py,sha256=L6lNpUaxyhMvLcM3dF8yEi2yCgTNdviaNMmG75bpBIc,12719
+dayhoff_tools/cli/batch/commands/__init__.py,sha256=1xRzzL_mc1hz1Pv0OWNr-g6fkL5XbEsOTGHzrqddLCA,458
+dayhoff_tools/cli/batch/commands/boltz.py,sha256=M7UNebaV7EAoHY_Fhml7JGnTZjM5o1nkYL22pSmqnWA,10422
+dayhoff_tools/cli/batch/commands/cancel.py,sha256=5FHLRoq8nvOr8HuKxXUZqAyAdjQP8seaNSaeAdhOoE8,2890
+dayhoff_tools/cli/batch/commands/embed_t5.py,sha256=D56Hyamzm-peVEiA3tDzotfpHd2bVsKfMprpoj_ADR8,9627
+dayhoff_tools/cli/batch/commands/finalize.py,sha256=2kQTtHxdW52s0lrLUlc7tx7Ab092sxs8uSc9-f2utUg,7198
+dayhoff_tools/cli/batch/commands/list_jobs.py,sha256=y90_XqFI2qcvV2XUC01P3P2aIdtl5hXP3cBDEofsRtU,2432
+dayhoff_tools/cli/batch/commands/local.py,sha256=vOTojTAp4YZXIMLKNqc76oIE0oWMjB1mtTe6r19LrEc,3075
+dayhoff_tools/cli/batch/commands/logs.py,sha256=FOYpANQCsQTJKigq77k1xbhgOqtRPw9hyHkljILWlmo,5241
+dayhoff_tools/cli/batch/commands/retry.py,sha256=FQMi77oh61i-JOD77OmoJECw03aWQIVS-MizKggSu1g,4481
+dayhoff_tools/cli/batch/commands/status.py,sha256=BZyCF115XNqx4KXyLASsowY_e4R29BYQJyaK_EulPL8,7553
+dayhoff_tools/cli/batch/commands/submit.py,sha256=9Ur2PFkb5vbWv8Xebqs8dsGDh28uAkOQBaMuZsLgnec,6752
+dayhoff_tools/cli/batch/job_id.py,sha256=mqr8SwcPlUWIYLaR_C4kACmL2ZFK8jaddd7B-45-XaQ,4246
+dayhoff_tools/cli/batch/manifest.py,sha256=2js-vbLkRipStN6_89T-wVUjgITA32EhN4eMdcw41hw,8610
 dayhoff_tools/cli/cloud_commands.py,sha256=xrWQZm48e09GTh8RmYh3JqXUzW8mMy07dHk_77LqZx8,41199
 dayhoff_tools/cli/engine1/__init__.py,sha256=RE45X2IPCNUvQp6_OHI2lbjwoqexkH3roUPccIHkeJo,9540
 dayhoff_tools/cli/engine1/engine_core.py,sha256=TECO6766GCZTtbxOY7QRggwmjpMH9JZSuxjbwF46unU,27061
@@ -13,8 +33,8 @@ dayhoff_tools/cli/engine1/studio_commands.py,sha256=VwTQujz32-uMcYusDRE73SdzRpgv
 dayhoff_tools/cli/engines_studios/__init__.py,sha256=E6aG0C6qjJnJuClemSKRFlYvLUL49MQZOvfqNQ7SDKs,159
 dayhoff_tools/cli/engines_studios/api_client.py,sha256=9mCVRjPUCYa7cFx29uVwYxmHPAM5FwsU9xdplvgftxs,13444
 dayhoff_tools/cli/engines_studios/auth.py,sha256=rwetV5hp4jSvK8FyvKgXCnezLOZx1aW8oiSDc6U83iE,5189
-dayhoff_tools/cli/engines_studios/engine-studio-cli.md,sha256=-AJB3VMV_xvPK9EcJOntTMu9dCiEch31bp-sxJUXp7w,29874
-dayhoff_tools/cli/engines_studios/engine_commands.py,sha256=ILPKI1HNjTYSl6C0VUO39fxJLL-IRHuYNq4Iqr5yHIY,38881
+dayhoff_tools/cli/engines_studios/engine-studio-cli.md,sha256=Z9u8m8eGEuMoBba8v-bkkPAT2DqK5FhwiUtoyEWzbyI,30646
+dayhoff_tools/cli/engines_studios/engine_commands.py,sha256=OQJ4WdmTilUbsLIcrd_E8kxabNRZ7HzxdwFEDP8JqCE,36765
 dayhoff_tools/cli/engines_studios/progress.py,sha256=VW70t7sEHlbLpCi6LOaY19Rp1Kx6Rt9CKNnmaZWFteA,9496
 dayhoff_tools/cli/engines_studios/simulators/cli-simulators.md,sha256=FZJl6nehdr2Duht2cx3yijcak0yKyOaHTrTzvFTAfZs,4976
 dayhoff_tools/cli/engines_studios/simulators/demo.sh,sha256=8tYABSCxLNXqGs-4r071V9mpKNZ5DTQ34WZ-v3d5s94,5364
@@ -24,9 +44,10 @@ dayhoff_tools/cli/engines_studios/simulators/idle_status_simulator.py,sha256=F_M
 dayhoff_tools/cli/engines_studios/simulators/simulator_utils.py,sha256=HA08pIMJWV3OFrWj3Ca8GldvgJZfFoTOloyLK0UWMgA,6729
 dayhoff_tools/cli/engines_studios/simulators/studio_list_simulator.py,sha256=ntizeR0BJLdJOwCRBKPajc2xT-BL7SNnONxfgxXDgr8,11609
 dayhoff_tools/cli/engines_studios/simulators/studio_status_simulator.py,sha256=6WvpnRawJVaQf_H81zuR1_66igRRVxPxjAt8e69xjp4,5394
-dayhoff_tools/cli/engines_studios/studio_commands.py,sha256=4ul6i8HDHZTffavu1y_j4kwvsDNvjMvYMWbZGXN8nKY,25597
+dayhoff_tools/cli/engines_studios/ssh_config.py,sha256=UCv-jf_zSuk7FUStkCQBAJz1QkxiSEwZbdSrwt_9SMU,2932
+dayhoff_tools/cli/engines_studios/studio_commands.py,sha256=YM81roRzpLpc6XkL4XsO5rmWA-L1aJdOvPmGZFoMPGs,25966
 dayhoff_tools/cli/github_commands.py,sha256=pfrxI68LObGm_gtPlQN-gHPahHV4l9k9T4GqO99NNL0,8948
-dayhoff_tools/cli/main.py,sha256=Vmfqzabc2ZZ6Uoq9mfEA5ko1r5eGXMf9uJqagIBQUC0,8091
+dayhoff_tools/cli/main.py,sha256=6W-fdRfjkPGx4fnfAhmEKyFl6Ou1VOxy4IYFpcFWkrA,8489
 dayhoff_tools/cli/swarm_commands.py,sha256=5EyKj8yietvT5lfoz8Zx0iQvVaNgc3SJX1z2zQR6o6M,5614
 dayhoff_tools/cli/utility_commands.py,sha256=e2P4dCCtoqMUGNyb0lFBZ6GZpl5Zslm1qqE5qIvsy38,50765
 dayhoff_tools/deployment/base.py,sha256=uZnFvnPQx6pH_HmJbdThweAs3BrxMaDohpE3iX_-yk4,18377
@@ -49,7 +70,7 @@ dayhoff_tools/intake/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJq
 dayhoff_tools/logs.py,sha256=DKdeP0k0kliRcilwvX0mUB2eipO5BdWUeHwh-VnsICs,838
 dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
 dayhoff_tools/warehouse.py,sha256=UETBtZD3r7WgvURqfGbyHlT7cxoiVq8isjzMuerKw8I,24475
-dayhoff_tools-1.14.1.dist-info/METADATA,sha256=9hTqtnpcQc7Ehvx2YP13N8mVZNiYE__EB0HiWj9_rPA,2980
-dayhoff_tools-1.14.1.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
-dayhoff_tools-1.14.1.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
-dayhoff_tools-1.14.1.dist-info/RECORD,,
+dayhoff_tools-1.14.2.dist-info/METADATA,sha256=v0DhSbERngGi4BentS_cQjF3bDiyoxg9HAFIEhvAKTU,3184
+dayhoff_tools-1.14.2.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
+dayhoff_tools-1.14.2.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
+dayhoff_tools-1.14.2.dist-info/RECORD,,