dayhoff-tools 1.14.14__py3-none-any.whl → 1.14.15__py3-none-any.whl

dayhoff_tools/cli/utility_commands.py

@@ -110,24 +110,11 @@ def build_and_upload_wheel(bump_part: str = "patch"):
     publish_cmd = ["uv", "publish", "--token", token]
     print("Using UV_PUBLISH_TOKEN for authentication.")
 
-    # Find the primary manifest (prefer AWS, then Mac, then Workstation)
-    pyproject_path = None
-    for candidate in [
-        "pyproject.aws.toml",
-        "pyproject.mac.toml",
-        "pyproject.workstation.toml",
-    ]:
-        if Path(candidate).exists():
-            pyproject_path = candidate
-            break
-
-    if not pyproject_path:
-        print(
-            "Error: No platform-specific manifest found (pyproject.aws.toml, pyproject.mac.toml, or pyproject.workstation.toml)"
-        )
+    # Use standard pyproject.toml
+    pyproject_path = "pyproject.toml"
+    if not Path(pyproject_path).exists():
+        print("Error: pyproject.toml not found in current directory.")
         return
-
-    print(f"Using manifest: {pyproject_path}")
     current_version = None  # Initialize in case the first try block fails
 
     try:
@@ -190,90 +177,33 @@ def build_and_upload_wheel(bump_part: str = "patch"):
             f.write(new_content)
         print(f"Updated {pyproject_path} with version {new_version}")
 
-        # Mirror version in all other platform manifests (best-effort)
-        other_manifests = []
-        for candidate in [
-            "pyproject.aws.toml",
-            "pyproject.mac.toml",
-            "pyproject.workstation.toml",
-        ]:
-            if Path(candidate).exists() and candidate != pyproject_path:
-                other_manifests.append(Path(candidate))
-
-        for manifest_path in other_manifests:
-            try:
-                content = manifest_path.read_text()
-                pattern = re.compile(
-                    f'^version\s*=\s*"{re.escape(current_version)}"', re.MULTILINE
-                )
-                new_content, replacements = pattern.subn(
-                    f'version = "{new_version}"', content
-                )
-                if replacements > 0:
-                    manifest_path.write_text(new_content)
-                    print(f"Updated {manifest_path} with version {new_version}")
-            except Exception as e:
-                print(f"Warning: Could not update {manifest_path}: {e}")
         # --- End Version Bumping Logic ---
 
         # Build wheel and sdist
-        # UV expects pyproject.toml, so temporarily copy the platform manifest
-        backup_created = False
-        temp_pyproject_created = False
-        if pyproject_path != "pyproject.toml":
-            if Path("pyproject.toml").exists():
-                Path("pyproject.toml").rename("pyproject.toml.build.bak")
-                backup_created = True
-            Path(pyproject_path).read_text()
-            with open("pyproject.toml", "w") as f:
-                f.write(Path(pyproject_path).read_text())
-            temp_pyproject_created = True
+        build_cmd = ["uv", "build"]
+        print(f"Running command: {BLUE}{' '.join(build_cmd)}{RESET}")
+        subprocess.run(build_cmd, check=True)
 
-        try:
-            build_cmd = ["uv", "build"]
-            # Print command in blue
-            print(f"Running command: {BLUE}{' '.join(build_cmd)}{RESET}")
-            subprocess.run(build_cmd, check=True)
-
-            # Upload using uv publish with explicit arguments
-            # Print masked command in blue
-            print(f"Running command: {BLUE}{' '.join(publish_cmd_safe_print)}{RESET}")
-            subprocess.run(
-                publish_cmd,  # Use the actual command with token
-                check=True,
-            )
+        # Upload to PyPI
+        print(f"Running command: {BLUE}{' '.join(publish_cmd_safe_print)}{RESET}")
+        subprocess.run(publish_cmd, check=True)
 
-            print(f"Successfully built and uploaded version {new_version} to PyPI")
+        print(f"Successfully built and uploaded version {new_version} to PyPI")
 
-            # Re-install DHT in current venv when building from DHT itself
-            # (Keep temp pyproject.toml until after this step)
-            try:
-                proj_name = None
-                try:
-                    proj_toml = toml.load(pyproject_path)
-                    proj_name = (
-                        proj_toml.get("project", {}).get("name")
-                        if isinstance(proj_toml, dict)
-                        else None
-                    )
-                except Exception:
-                    pass
-                if proj_name == "dayhoff-tools":
-                    print("Re-installing dayhoff-tools into the active environment…")
-                    reinstall_cmd = ["uv", "pip", "install", "-e", ".[full]"]
-                    print(f"Running command: {BLUE}{' '.join(reinstall_cmd)}{RESET}")
-                    subprocess.run(reinstall_cmd, check=True)
-                    print("dayhoff-tools reinstalled in the current environment.")
-            except subprocess.CalledProcessError as e:
-                print(f"Warning: Failed to reinstall dayhoff-tools locally: {e}")
-
-        finally:
-            # Restore original state (always clean up, even if errors occurred)
-            if temp_pyproject_created:
-                if Path("pyproject.toml").exists():
-                    Path("pyproject.toml").unlink()
-                if backup_created and Path("pyproject.toml.build.bak").exists():
-                    Path("pyproject.toml.build.bak").rename("pyproject.toml")
+        # Re-install DHT in Pixi environment when building from DHT itself
+        try:
+            proj_toml = toml.load(pyproject_path)
+            proj_name = proj_toml.get("project", {}).get("name")
+            if proj_name == "dayhoff-tools":
+                print("Re-installing dayhoff-tools into the Pixi environment...")
+                reinstall_cmd = ["pixi", "install"]
+                print(f"Running command: {BLUE}{' '.join(reinstall_cmd)}{RESET}")
+                subprocess.run(reinstall_cmd, check=True)
+                print("dayhoff-tools reinstalled in the Pixi environment.")
+        except subprocess.CalledProcessError as e:
+            print(f"Warning: Failed to reinstall dayhoff-tools locally: {e}")
+        except Exception:
+            pass  # Not dayhoff-tools or couldn't read toml
 
     except FileNotFoundError:
         print(f"Error: {pyproject_path} not found.")
@@ -304,42 +234,18 @@ def build_and_upload_wheel(bump_part: str = "patch"):
                         f"Warning: Could not find version {new_version} to revert in {pyproject_path}."
                     )
 
-                # Also revert other platform manifests
-                for candidate in [
-                    "pyproject.aws.toml",
-                    "pyproject.mac.toml",
-                    "pyproject.workstation.toml",
-                ]:
-                    if Path(candidate).exists() and candidate != pyproject_path:
-                        try:
-                            content_revert = Path(candidate).read_text()
-                            reverted, num = pattern_revert.subn(
-                                f'version = "{current_version}"', content_revert
-                            )
-                            if num > 0:
-                                Path(candidate).write_text(reverted)
-                                print(f"Successfully reverted version in {candidate}.")
-                        except Exception as e2:
-                            print(
-                                f"Warning: Failed to revert version change in {candidate}: {e2}"
-                            )
             except Exception as revert_e:
-                print(
-                    f"Warning: Failed to revert version change in {pyproject_path}: {revert_e}"
-                )
+                print(f"Warning: Failed to revert version change: {revert_e}")
     except Exception as e:
         print(f"An unexpected error occurred: {e}")
-        # Also attempt rollback here if version was bumped
+        # Attempt rollback if version was bumped
         if current_version and "new_version" in locals() and new_version:
             try:
-                print(
-                    f"Attempting to revert version in {pyproject_path} back to {current_version} due to unexpected error..."
-                )
-                # (Same revert logic as above)
+                print(f"Attempting to revert version back to {current_version}...")
                 with open(pyproject_path, "r") as f:
                     content_revert = f.read()
                 pattern_revert = re.compile(
-                    f'^version\s*=\s*"{re.escape(new_version)}"', re.MULTILINE
+                    f'^version\\s*=\\s*"{re.escape(new_version)}"', re.MULTILINE
                 )
                 reverted_content, num_revert = pattern_revert.subn(
                     f'version = "{current_version}"', content_revert
@@ -347,34 +253,11 @@ def build_and_upload_wheel(bump_part: str = "patch"):
                 if num_revert > 0:
                     with open(pyproject_path, "w") as f:
                         f.write(reverted_content)
-                    print(f"Successfully reverted version in {pyproject_path}.")
+                    print("Successfully reverted version in pyproject.toml.")
                 else:
-                    print(
-                        f"Warning: Could not find version {new_version} to revert in {pyproject_path}."
-                    )
-                # Also revert other platform manifests
-                for candidate in [
-                    "pyproject.aws.toml",
-                    "pyproject.mac.toml",
-                    "pyproject.workstation.toml",
-                ]:
-                    if Path(candidate).exists() and candidate != pyproject_path:
-                        try:
-                            content_revert = Path(candidate).read_text()
-                            reverted, num = pattern_revert.subn(
-                                f'version = "{current_version}"', content_revert
-                            )
-                            if num > 0:
-                                Path(candidate).write_text(reverted)
-                                print(f"Successfully reverted version in {candidate}.")
-                        except Exception as e2:
-                            print(
-                                f"Warning: Failed to revert version change in {candidate}: {e2}"
-                            )
+                    print(f"Warning: Could not find version {new_version} to revert.")
             except Exception as revert_e:
-                print(
-                    f"Warning: Failed to revert version change in {pyproject_path}: {revert_e}"
-                )
+                print(f"Warning: Failed to revert version change: {revert_e}")
 
 
 # --- Dependency Management Commands ---

{dayhoff_tools-1.14.14.dist-info → dayhoff_tools-1.14.15.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dayhoff-tools
-Version: 1.14.14
+Version: 1.14.15
 Summary: Common tools for all the repos at Dayhoff Labs
 Author: Daniel Martin-Alarcon
 Author-email: dma@dayhofflabs.com
@@ -25,7 +25,7 @@ Requires-Dist: fair-esm (>=2.0.0) ; extra == "full"
 Requires-Dist: firebase-admin (>=6.5.0)
 Requires-Dist: h5py (>=3.11.0) ; extra == "full"
 Requires-Dist: h5py (>=3.13.0) ; extra == "embedders"
-Requires-Dist: numpy (>=1.26.4) ; extra == "embedders"
+Requires-Dist: numpy (>=1.26.4,<2.0) ; extra == "embedders"
 Requires-Dist: pandas (>=2.2.0,<2.2.3) ; extra == "embedders"
 Requires-Dist: pandas (>=2.2.0,<2.2.3) ; extra == "full"
 Requires-Dist: pydantic (>=2.0.0) ; extra == "batch"
@@ -38,7 +38,6 @@ Requires-Dist: sentencepiece (>=0.2.0) ; extra == "embedders"
 Requires-Dist: sentencepiece (>=0.2.0) ; extra == "full"
 Requires-Dist: sqlalchemy (>=2.0.40,<3.0.0) ; extra == "full"
 Requires-Dist: toml (>=0.10)
-Requires-Dist: torch (>=2.4.0) ; extra == "embedders"
 Requires-Dist: tqdm (>=4.67.1) ; extra == "embedders"
 Requires-Dist: tqdm (>=4.67.1) ; extra == "full"
 Requires-Dist: transformers (==4.36.2) ; extra == "full"

{dayhoff_tools-1.14.14.dist-info → dayhoff_tools-1.14.15.dist-info}/RECORD

@@ -50,7 +50,7 @@ dayhoff_tools/cli/engines_studios/studio_commands.py,sha256=KGSNZQS8MmM_DfQzT9SR
 dayhoff_tools/cli/github_commands.py,sha256=pfrxI68LObGm_gtPlQN-gHPahHV4l9k9T4GqO99NNL0,8948
 dayhoff_tools/cli/main.py,sha256=6ffnaFzui-bVd1ME7yThk_ZrMOofwStamEUkkYlminY,8503
 dayhoff_tools/cli/swarm_commands.py,sha256=5EyKj8yietvT5lfoz8Zx0iQvVaNgc3SJX1z2zQR6o6M,5614
-dayhoff_tools/cli/utility_commands.py,sha256=e2P4dCCtoqMUGNyb0lFBZ6GZpl5Zslm1qqE5qIvsy38,50765
+dayhoff_tools/cli/utility_commands.py,sha256=O6vy3rONTeuPYZyhjnFeqf8GxUlyc7i2O11d1s3shH4,45513
 dayhoff_tools/deployment/base.py,sha256=uZnFvnPQx6pH_HmJbdThweAs3BrxMaDohpE3iX_-yk4,18377
 dayhoff_tools/deployment/deploy_aws.py,sha256=1j16aE4hmln4pQVtcSGuIGVWbOBfWwveytvihjofADo,21519
 dayhoff_tools/deployment/deploy_gcp.py,sha256=xgaOVsUDmP6wSEMYNkm1yRNcVskfdz80qJtCulkBIAM,8860
@@ -71,7 +71,7 @@ dayhoff_tools/intake/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJq
 dayhoff_tools/logs.py,sha256=DKdeP0k0kliRcilwvX0mUB2eipO5BdWUeHwh-VnsICs,838
 dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
 dayhoff_tools/warehouse.py,sha256=UETBtZD3r7WgvURqfGbyHlT7cxoiVq8isjzMuerKw8I,24475
-dayhoff_tools-1.14.14.dist-info/METADATA,sha256=QdEyPEUN_WWKDpvsKdWnN38FDpX6bqc4rsF4jGFbBDY,3185
-dayhoff_tools-1.14.14.dist-info/WHEEL,sha256=3ny-bZhpXrU6vSQ1UPG34FoxZBp3lVcvK0LkgUz6VLk,88
-dayhoff_tools-1.14.14.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
-dayhoff_tools-1.14.14.dist-info/RECORD,,
+dayhoff_tools-1.14.15.dist-info/METADATA,sha256=YBP4lpBDAIhxYuJ65DR_ADrajk6hyLC1e_UCVc_bwx8,3136
+dayhoff_tools-1.14.15.dist-info/WHEEL,sha256=3ny-bZhpXrU6vSQ1UPG34FoxZBp3lVcvK0LkgUz6VLk,88
+dayhoff_tools-1.14.15.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
+dayhoff_tools-1.14.15.dist-info/RECORD,,