dayhoff-tools 1.11.5__py3-none-any.whl → 1.11.7__py3-none-any.whl

dayhoff_tools/cli/utility_commands.py

@@ -559,16 +559,44 @@ def sync_with_toml(
             # Sync into the active environment
             if install_project:
                 print(
-                    "Syncing dependencies into ACTIVE env and installing project [full]…"
+                    "Syncing dependencies into ACTIVE env (project installed separately)…"
                 )
-                sync_cmd = ["uv", "sync", "--all-groups", "--active"]
+                sync_cmd = [
+                    "uv",
+                    "sync",
+                    "--all-groups",
+                    "--no-install-project",
+                    "--active",
+                ]
                 print(f"Running command: {BLUE}{' '.join(sync_cmd)}{RESET}")
                 subprocess.run(sync_cmd, check=True, cwd=str(mac_uv_dir))
-                # Install project from repo root
-                pip_install_cmd = ["uv", "pip", "install", "-e", ".[full]"]
-                print(f"Running command: {BLUE}{' '.join(pip_install_cmd)}{RESET}")
-                subprocess.run(pip_install_cmd, check=True)
-                print("Project installed with 'full' extras successfully.")
+
+                # Install project from repo root (where source code actually is)
+                # Temporarily create pyproject.toml at repo root for UV
+                print("Installing project with 'full' extras from repo root…")
+                temp_pyproject = False
+                backup_created = False
+                try:
+                    if not Path("pyproject.toml").exists():
+                        # Create temp pyproject.toml from platform manifest
+                        Path("pyproject.toml").write_text(mac_manifest.read_text())
+                        temp_pyproject = True
+                    elif Path("pyproject.toml").is_symlink():
+                        # Backup existing symlink
+                        Path("pyproject.toml").rename("pyproject.toml.sync.bak")
+                        Path("pyproject.toml").write_text(mac_manifest.read_text())
+                        backup_created = True
+
+                    pip_install_cmd = ["uv", "pip", "install", "-e", ".[full]"]
+                    print(f"Running command: {BLUE}{' '.join(pip_install_cmd)}{RESET}")
+                    subprocess.run(pip_install_cmd, check=True)
+                    print("Project installed with 'full' extras successfully.")
+                finally:
+                    # Clean up temp pyproject.toml
+                    if temp_pyproject and Path("pyproject.toml").exists():
+                        Path("pyproject.toml").unlink()
+                    if backup_created and Path("pyproject.toml.sync.bak").exists():
+                        Path("pyproject.toml.sync.bak").rename("pyproject.toml")
             else:
                 print("Syncing dependencies into ACTIVE env (project not installed)…")
                 sync_cmd = [
@@ -606,16 +634,46 @@ def sync_with_toml(
                 # Sync into the active environment
                 if install_project:
                     print(
-                        "Syncing dependencies into ACTIVE env and installing project [full]…"
+                        "Syncing dependencies into ACTIVE env (project installed separately)…"
                     )
-                    sync_cmd = ["uv", "sync", "--all-groups", "--active"]
+                    sync_cmd = [
+                        "uv",
+                        "sync",
+                        "--all-groups",
+                        "--no-install-project",
+                        "--active",
+                    ]
                     print(f"Running command: {BLUE}{' '.join(sync_cmd)}{RESET}")
                     subprocess.run(sync_cmd, check=True, cwd=str(aws_uv_dir))
-                    # Install project from repo root
-                    pip_install_cmd = ["uv", "pip", "install", "-e", ".[full]"]
-                    print(f"Running command: {BLUE}{' '.join(pip_install_cmd)}{RESET}")
-                    subprocess.run(pip_install_cmd, check=True)
-                    print("Project installed with 'full' extras successfully.")
+
+                    # Install project from repo root (where source code actually is)
+                    # Temporarily create pyproject.toml at repo root for UV
+                    print("Installing project with 'full' extras from repo root…")
+                    temp_pyproject = False
+                    backup_created = False
+                    try:
+                        if not Path("pyproject.toml").exists():
+                            # Create temp pyproject.toml from platform manifest
+                            Path("pyproject.toml").write_text(aws_manifest.read_text())
+                            temp_pyproject = True
+                        elif Path("pyproject.toml").is_symlink():
+                            # Backup existing symlink
+                            Path("pyproject.toml").rename("pyproject.toml.sync.bak")
+                            Path("pyproject.toml").write_text(aws_manifest.read_text())
+                            backup_created = True
+
+                        pip_install_cmd = ["uv", "pip", "install", "-e", ".[full]"]
+                        print(
+                            f"Running command: {BLUE}{' '.join(pip_install_cmd)}{RESET}"
+                        )
+                        subprocess.run(pip_install_cmd, check=True)
+                        print("Project installed with 'full' extras successfully.")
+                    finally:
+                        # Clean up temp pyproject.toml
+                        if temp_pyproject and Path("pyproject.toml").exists():
+                            Path("pyproject.toml").unlink()
+                        if backup_created and Path("pyproject.toml.sync.bak").exists():
+                            Path("pyproject.toml.sync.bak").rename("pyproject.toml")
                 else:
                     print(
                         "Syncing dependencies into ACTIVE env (project not installed)…"

{dayhoff_tools-1.11.5.dist-info → dayhoff_tools-1.11.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dayhoff-tools
-Version: 1.11.5
+Version: 1.11.7
 Summary: Common tools for all the repos at Dayhoff Labs
 Author: Daniel Martin-Alarcon
 Author-email: dma@dayhofflabs.com

{dayhoff_tools-1.11.5.dist-info → dayhoff_tools-1.11.7.dist-info}/RECORD

@@ -12,7 +12,7 @@ dayhoff_tools/cli/engine/shared.py,sha256=Ecx6I1jtzmxQDn3BezKpgpQ4SJeZf4SZjUCLg-
 dayhoff_tools/cli/engine/studio_commands.py,sha256=VwTQujz32-uMcYusDRE73SdzRpgvIkv7ZAF4zRv6AzA,30266
 dayhoff_tools/cli/main.py,sha256=Ii5boey--93yGthB_eS2LC7ZR3WHGsJXDHY7uElEtso,6169
 dayhoff_tools/cli/swarm_commands.py,sha256=5EyKj8yietvT5lfoz8Zx0iQvVaNgc3SJX1z2zQR6o6M,5614
-dayhoff_tools/cli/utility_commands.py,sha256=i2Lg5gEU3KKs4Nv8rn4o4-tPUFiR5Ygk2CiUzo78dSM,43470
+dayhoff_tools/cli/utility_commands.py,sha256=P6ZfWRedD6Uze-q5Zhm2wOFzosJDnHLwkd0Ir2TT-yQ,46442
 dayhoff_tools/deployment/base.py,sha256=48KE76QlWMeIZJefcBOZVbyChS2V_mgs7IQ31odPV2o,17806
 dayhoff_tools/deployment/deploy_aws.py,sha256=gfqh09hGbz0q3oPqVm0imd_CEjKF2k8moGNRIL26qqE,18614
 dayhoff_tools/deployment/deploy_gcp.py,sha256=xgaOVsUDmP6wSEMYNkm1yRNcVskfdz80qJtCulkBIAM,8860
@@ -33,7 +33,7 @@ dayhoff_tools/intake/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJq
 dayhoff_tools/logs.py,sha256=DKdeP0k0kliRcilwvX0mUB2eipO5BdWUeHwh-VnsICs,838
 dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
 dayhoff_tools/warehouse.py,sha256=UETBtZD3r7WgvURqfGbyHlT7cxoiVq8isjzMuerKw8I,24475
-dayhoff_tools-1.11.5.dist-info/METADATA,sha256=nSXreTQEikR5j9pMMKqJ9pP9hMJZ2Av5GseA_iGVtHM,3003
-dayhoff_tools-1.11.5.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
-dayhoff_tools-1.11.5.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
-dayhoff_tools-1.11.5.dist-info/RECORD,,
+dayhoff_tools-1.11.7.dist-info/METADATA,sha256=I3IOGfqRo9xJzkAs0bXH79VbRxmHl4wEuK5Qed7poRQ,3003
+dayhoff_tools-1.11.7.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
+dayhoff_tools-1.11.7.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
+dayhoff_tools-1.11.7.dist-info/RECORD,,