dayhoff-tools 1.11.3__py3-none-any.whl → 1.11.5__py3-none-any.whl

dayhoff_tools/cli/utility_commands.py

@@ -219,6 +219,7 @@ def build_and_upload_wheel(bump_part: str = "patch"):
         # Build wheel and sdist
         # UV expects pyproject.toml, so temporarily copy the platform manifest
         backup_created = False
+        temp_pyproject_created = False
         if pyproject_path != "pyproject.toml":
             if Path("pyproject.toml").exists():
                 Path("pyproject.toml").rename("pyproject.toml.build.bak")
@@ -226,48 +227,53 @@ def build_and_upload_wheel(bump_part: str = "patch"):
             Path(pyproject_path).read_text()
             with open("pyproject.toml", "w") as f:
                 f.write(Path(pyproject_path).read_text())
+            temp_pyproject_created = True
 
-        build_cmd = ["uv", "build"]
-        # Print command in blue
-        print(f"Running command: {BLUE}{' '.join(build_cmd)}{RESET}")
-        subprocess.run(build_cmd, check=True)
-
-        # Restore original state
-        if pyproject_path != "pyproject.toml":
-            Path("pyproject.toml").unlink()
-            if backup_created:
-                Path("pyproject.toml.build.bak").rename("pyproject.toml")
-
-        # Upload using uv publish with explicit arguments
-        # Print masked command in blue
-        print(f"Running command: {BLUE}{' '.join(publish_cmd_safe_print)}{RESET}")
-        subprocess.run(
-            publish_cmd,  # Use the actual command with token
-            check=True,
-        )
+        try:
+            build_cmd = ["uv", "build"]
+            # Print command in blue
+            print(f"Running command: {BLUE}{' '.join(build_cmd)}{RESET}")
+            subprocess.run(build_cmd, check=True)
+
+            # Upload using uv publish with explicit arguments
+            # Print masked command in blue
+            print(f"Running command: {BLUE}{' '.join(publish_cmd_safe_print)}{RESET}")
+            subprocess.run(
+                publish_cmd,  # Use the actual command with token
+                check=True,
+            )
 
-        print(f"Successfully built and uploaded version {new_version} to PyPI")
+            print(f"Successfully built and uploaded version {new_version} to PyPI")
 
-        # Re-install DHT in current venv when building from DHT itself
-        try:
-            proj_name = None
+            # Re-install DHT in current venv when building from DHT itself
+            # (Keep temp pyproject.toml until after this step)
             try:
-                proj_toml = toml.load(pyproject_path)
-                proj_name = (
-                    proj_toml.get("project", {}).get("name")
-                    if isinstance(proj_toml, dict)
-                    else None
-                )
-            except Exception:
-                pass
-            if proj_name == "dayhoff-tools":
-                print("Re-installing dayhoff-tools into the active environment…")
-                reinstall_cmd = ["uv", "pip", "install", "-e", ".[full]"]
-                print(f"Running command: {BLUE}{' '.join(reinstall_cmd)}{RESET}")
-                subprocess.run(reinstall_cmd, check=True)
-                print("dayhoff-tools reinstalled in the current environment.")
-        except subprocess.CalledProcessError as e:
-            print(f"Warning: Failed to reinstall dayhoff-tools locally: {e}")
+                proj_name = None
+                try:
+                    proj_toml = toml.load(pyproject_path)
+                    proj_name = (
+                        proj_toml.get("project", {}).get("name")
+                        if isinstance(proj_toml, dict)
+                        else None
+                    )
+                except Exception:
+                    pass
+                if proj_name == "dayhoff-tools":
+                    print("Re-installing dayhoff-tools into the active environment…")
+                    reinstall_cmd = ["uv", "pip", "install", "-e", ".[full]"]
+                    print(f"Running command: {BLUE}{' '.join(reinstall_cmd)}{RESET}")
+                    subprocess.run(reinstall_cmd, check=True)
+                    print("dayhoff-tools reinstalled in the current environment.")
+            except subprocess.CalledProcessError as e:
+                print(f"Warning: Failed to reinstall dayhoff-tools locally: {e}")
+
+        finally:
+            # Restore original state (always clean up, even if errors occurred)
+            if temp_pyproject_created:
+                if Path("pyproject.toml").exists():
+                    Path("pyproject.toml").unlink()
+                if backup_created and Path("pyproject.toml.build.bak").exists():
+                    Path("pyproject.toml.build.bak").rename("pyproject.toml")
 
     except FileNotFoundError:
         print(f"Error: {pyproject_path} not found.")
@@ -538,6 +544,10 @@ def sync_with_toml(
             mac_pyproject = mac_uv_dir / "pyproject.toml"
             mac_pyproject.write_text(mac_manifest.read_text())
 
+            # Copy README.md if it exists (required by some build backends)
+            if Path("README.md").exists():
+                (mac_uv_dir / "README.md").write_text(Path("README.md").read_text())
+
             # Ensure lock matches manifest (in mac temp dir)
             print("Ensuring lock file matches pyproject.mac.toml (Mac devcon)…")
             lock_cmd = ["uv", "lock"]
@@ -581,6 +591,10 @@ def sync_with_toml(
                 aws_pyproject = aws_uv_dir / "pyproject.toml"
                 aws_pyproject.write_text(aws_manifest.read_text())
 
+                # Copy README.md if it exists (required by some build backends)
+                if Path("README.md").exists():
+                    (aws_uv_dir / "README.md").write_text(Path("README.md").read_text())
+
                 # Ensure lock matches manifest (in aws temp dir)
                 print("Ensuring lock file matches pyproject.aws.toml (AWS devcon)…")
                 lock_cmd = ["uv", "lock"]
@@ -988,6 +1002,9 @@ def update_dependencies(
         if platform == "mac" and mac_manifest.exists():
             mac_uv_dir.mkdir(parents=True, exist_ok=True)
             (mac_uv_dir / "pyproject.toml").write_text(mac_manifest.read_text())
+            # Copy README.md if it exists (required by some build backends)
+            if Path("README.md").exists():
+                (mac_uv_dir / "README.md").write_text(Path("README.md").read_text())
             uv_cwd = str(mac_uv_dir)
             lock_file_path = mac_uv_dir / "uv.lock"
             manifest_path_for_constraint = mac_manifest
@@ -995,6 +1012,9 @@ def update_dependencies(
             # AWS platform (default)
             aws_uv_dir.mkdir(parents=True, exist_ok=True)
             (aws_uv_dir / "pyproject.toml").write_text(aws_manifest.read_text())
+            # Copy README.md if it exists (required by some build backends)
+            if Path("README.md").exists():
+                (aws_uv_dir / "README.md").write_text(Path("README.md").read_text())
             uv_cwd = str(aws_uv_dir)
             lock_file_path = aws_uv_dir / "uv.lock"
             manifest_path_for_constraint = aws_manifest

{dayhoff_tools-1.11.3.dist-info → dayhoff_tools-1.11.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: dayhoff-tools
-Version: 1.11.3
+Version: 1.11.5
 Summary: Common tools for all the repos at Dayhoff Labs
 Author: Daniel Martin-Alarcon
 Author-email: dma@dayhofflabs.com
@@ -29,6 +29,7 @@ Requires-Dist: pyyaml (>=6.0)
 Requires-Dist: questionary (>=2.0.1)
 Requires-Dist: rdkit-pypi (>=2022.9.5) ; extra == "full"
 Requires-Dist: requests (>=2.31.0)
+Requires-Dist: seaborn
 Requires-Dist: sentencepiece (>=0.2.0) ; extra == "embedders"
 Requires-Dist: sentencepiece (>=0.2.0) ; extra == "full"
 Requires-Dist: sqlalchemy (>=2.0.40,<3.0.0) ; extra == "full"

{dayhoff_tools-1.11.3.dist-info → dayhoff_tools-1.11.5.dist-info}/RECORD

@@ -12,7 +12,7 @@ dayhoff_tools/cli/engine/shared.py,sha256=Ecx6I1jtzmxQDn3BezKpgpQ4SJeZf4SZjUCLg-
 dayhoff_tools/cli/engine/studio_commands.py,sha256=VwTQujz32-uMcYusDRE73SdzRpgvIkv7ZAF4zRv6AzA,30266
 dayhoff_tools/cli/main.py,sha256=Ii5boey--93yGthB_eS2LC7ZR3WHGsJXDHY7uElEtso,6169
 dayhoff_tools/cli/swarm_commands.py,sha256=5EyKj8yietvT5lfoz8Zx0iQvVaNgc3SJX1z2zQR6o6M,5614
-dayhoff_tools/cli/utility_commands.py,sha256=Yk2s09Dqkmv1CWJhhMV07Gy0-hZpQhkfiTSmOlykAa8,42185
+dayhoff_tools/cli/utility_commands.py,sha256=i2Lg5gEU3KKs4Nv8rn4o4-tPUFiR5Ygk2CiUzo78dSM,43470
 dayhoff_tools/deployment/base.py,sha256=48KE76QlWMeIZJefcBOZVbyChS2V_mgs7IQ31odPV2o,17806
 dayhoff_tools/deployment/deploy_aws.py,sha256=gfqh09hGbz0q3oPqVm0imd_CEjKF2k8moGNRIL26qqE,18614
 dayhoff_tools/deployment/deploy_gcp.py,sha256=xgaOVsUDmP6wSEMYNkm1yRNcVskfdz80qJtCulkBIAM,8860
@@ -33,7 +33,7 @@ dayhoff_tools/intake/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJq
 dayhoff_tools/logs.py,sha256=DKdeP0k0kliRcilwvX0mUB2eipO5BdWUeHwh-VnsICs,838
 dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
 dayhoff_tools/warehouse.py,sha256=UETBtZD3r7WgvURqfGbyHlT7cxoiVq8isjzMuerKw8I,24475
-dayhoff_tools-1.11.3.dist-info/METADATA,sha256=tESeKSHZIZHMi5ekLoJRkRTyBTON40yJ0oegecixNnY,2980
-dayhoff_tools-1.11.3.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
-dayhoff_tools-1.11.3.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
-dayhoff_tools-1.11.3.dist-info/RECORD,,
+dayhoff_tools-1.11.5.dist-info/METADATA,sha256=nSXreTQEikR5j9pMMKqJ9pP9hMJZ2Av5GseA_iGVtHM,3003
+dayhoff_tools-1.11.5.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
+dayhoff_tools-1.11.5.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
+dayhoff_tools-1.11.5.dist-info/RECORD,,