dayhoff-tools 1.11.3__py3-none-any.whl → 1.11.4__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- dayhoff_tools/cli/utility_commands.py +44 -38
 - {dayhoff_tools-1.11.3.dist-info → dayhoff_tools-1.11.4.dist-info}/METADATA +1 -1
 - {dayhoff_tools-1.11.3.dist-info → dayhoff_tools-1.11.4.dist-info}/RECORD +5 -5
 - {dayhoff_tools-1.11.3.dist-info → dayhoff_tools-1.11.4.dist-info}/WHEEL +0 -0
 - {dayhoff_tools-1.11.3.dist-info → dayhoff_tools-1.11.4.dist-info}/entry_points.txt +0 -0
 
| 
         @@ -219,6 +219,7 @@ def build_and_upload_wheel(bump_part: str = "patch"): 
     | 
|
| 
       219 
219 
     | 
    
         
             
                    # Build wheel and sdist
         
     | 
| 
       220 
220 
     | 
    
         
             
                    # UV expects pyproject.toml, so temporarily copy the platform manifest
         
     | 
| 
       221 
221 
     | 
    
         
             
                    backup_created = False
         
     | 
| 
      
 222 
     | 
    
         
            +
                    temp_pyproject_created = False
         
     | 
| 
       222 
223 
     | 
    
         
             
                    if pyproject_path != "pyproject.toml":
         
     | 
| 
       223 
224 
     | 
    
         
             
                        if Path("pyproject.toml").exists():
         
     | 
| 
       224 
225 
     | 
    
         
             
                            Path("pyproject.toml").rename("pyproject.toml.build.bak")
         
     | 
| 
         @@ -226,48 +227,53 @@ def build_and_upload_wheel(bump_part: str = "patch"): 
     | 
|
| 
       226 
227 
     | 
    
         
             
                        Path(pyproject_path).read_text()
         
     | 
| 
       227 
228 
     | 
    
         
             
                        with open("pyproject.toml", "w") as f:
         
     | 
| 
       228 
229 
     | 
    
         
             
                            f.write(Path(pyproject_path).read_text())
         
     | 
| 
      
 230 
     | 
    
         
            +
                        temp_pyproject_created = True
         
     | 
| 
       229 
231 
     | 
    
         | 
| 
       230 
     | 
    
         
            -
                     
     | 
| 
       231 
     | 
    
         
            -
             
     | 
| 
       232 
     | 
    
         
            -
             
     | 
| 
       233 
     | 
    
         
            -
             
     | 
| 
       234 
     | 
    
         
            -
             
     | 
| 
       235 
     | 
    
         
            -
             
     | 
| 
       236 
     | 
    
         
            -
             
     | 
| 
       237 
     | 
    
         
            -
                         
     | 
| 
       238 
     | 
    
         
            -
                         
     | 
| 
       239 
     | 
    
         
            -
             
     | 
| 
       240 
     | 
    
         
            -
             
     | 
| 
       241 
     | 
    
         
            -
             
     | 
| 
       242 
     | 
    
         
            -
             
     | 
| 
       243 
     | 
    
         
            -
                    print(f"Running command: {BLUE}{' '.join(publish_cmd_safe_print)}{RESET}")
         
     | 
| 
       244 
     | 
    
         
            -
                    subprocess.run(
         
     | 
| 
       245 
     | 
    
         
            -
                        publish_cmd,  # Use the actual command with token
         
     | 
| 
       246 
     | 
    
         
            -
                        check=True,
         
     | 
| 
       247 
     | 
    
         
            -
                    )
         
     | 
| 
      
 232 
     | 
    
         
            +
                    try:
         
     | 
| 
      
 233 
     | 
    
         
            +
                        build_cmd = ["uv", "build"]
         
     | 
| 
      
 234 
     | 
    
         
            +
                        # Print command in blue
         
     | 
| 
      
 235 
     | 
    
         
            +
                        print(f"Running command: {BLUE}{' '.join(build_cmd)}{RESET}")
         
     | 
| 
      
 236 
     | 
    
         
            +
                        subprocess.run(build_cmd, check=True)
         
     | 
| 
      
 237 
     | 
    
         
            +
             
     | 
| 
      
 238 
     | 
    
         
            +
                        # Upload using uv publish with explicit arguments
         
     | 
| 
      
 239 
     | 
    
         
            +
                        # Print masked command in blue
         
     | 
| 
      
 240 
     | 
    
         
            +
                        print(f"Running command: {BLUE}{' '.join(publish_cmd_safe_print)}{RESET}")
         
     | 
| 
      
 241 
     | 
    
         
            +
                        subprocess.run(
         
     | 
| 
      
 242 
     | 
    
         
            +
                            publish_cmd,  # Use the actual command with token
         
     | 
| 
      
 243 
     | 
    
         
            +
                            check=True,
         
     | 
| 
      
 244 
     | 
    
         
            +
                        )
         
     | 
| 
       248 
245 
     | 
    
         | 
| 
       249 
     | 
    
         
            -
             
     | 
| 
      
 246 
     | 
    
         
            +
                        print(f"Successfully built and uploaded version {new_version} to PyPI")
         
     | 
| 
       250 
247 
     | 
    
         | 
| 
       251 
     | 
    
         
            -
             
     | 
| 
       252 
     | 
    
         
            -
             
     | 
| 
       253 
     | 
    
         
            -
                        proj_name = None
         
     | 
| 
      
 248 
     | 
    
         
            +
                        # Re-install DHT in current venv when building from DHT itself
         
     | 
| 
      
 249 
     | 
    
         
            +
                        # (Keep temp pyproject.toml until after this step)
         
     | 
| 
       254 
250 
     | 
    
         
             
                        try:
         
     | 
| 
       255 
     | 
    
         
            -
                             
     | 
| 
       256 
     | 
    
         
            -
                             
     | 
| 
       257 
     | 
    
         
            -
                                proj_toml 
     | 
| 
       258 
     | 
    
         
            -
                                 
     | 
| 
       259 
     | 
    
         
            -
             
     | 
| 
       260 
     | 
    
         
            -
             
     | 
| 
       261 
     | 
    
         
            -
             
     | 
| 
       262 
     | 
    
         
            -
             
     | 
| 
       263 
     | 
    
         
            -
             
     | 
| 
       264 
     | 
    
         
            -
             
     | 
| 
       265 
     | 
    
         
            -
                             
     | 
| 
       266 
     | 
    
         
            -
             
     | 
| 
       267 
     | 
    
         
            -
             
     | 
| 
       268 
     | 
    
         
            -
             
     | 
| 
       269 
     | 
    
         
            -
             
     | 
| 
       270 
     | 
    
         
            -
             
     | 
| 
      
 251 
     | 
    
         
            +
                            proj_name = None
         
     | 
| 
      
 252 
     | 
    
         
            +
                            try:
         
     | 
| 
      
 253 
     | 
    
         
            +
                                proj_toml = toml.load(pyproject_path)
         
     | 
| 
      
 254 
     | 
    
         
            +
                                proj_name = (
         
     | 
| 
      
 255 
     | 
    
         
            +
                                    proj_toml.get("project", {}).get("name")
         
     | 
| 
      
 256 
     | 
    
         
            +
                                    if isinstance(proj_toml, dict)
         
     | 
| 
      
 257 
     | 
    
         
            +
                                    else None
         
     | 
| 
      
 258 
     | 
    
         
            +
                                )
         
     | 
| 
      
 259 
     | 
    
         
            +
                            except Exception:
         
     | 
| 
      
 260 
     | 
    
         
            +
                                pass
         
     | 
| 
      
 261 
     | 
    
         
            +
                            if proj_name == "dayhoff-tools":
         
     | 
| 
      
 262 
     | 
    
         
            +
                                print("Re-installing dayhoff-tools into the active environment…")
         
     | 
| 
      
 263 
     | 
    
         
            +
                                reinstall_cmd = ["uv", "pip", "install", "-e", ".[full]"]
         
     | 
| 
      
 264 
     | 
    
         
            +
                                print(f"Running command: {BLUE}{' '.join(reinstall_cmd)}{RESET}")
         
     | 
| 
      
 265 
     | 
    
         
            +
                                subprocess.run(reinstall_cmd, check=True)
         
     | 
| 
      
 266 
     | 
    
         
            +
                                print("dayhoff-tools reinstalled in the current environment.")
         
     | 
| 
      
 267 
     | 
    
         
            +
                        except subprocess.CalledProcessError as e:
         
     | 
| 
      
 268 
     | 
    
         
            +
                            print(f"Warning: Failed to reinstall dayhoff-tools locally: {e}")
         
     | 
| 
      
 269 
     | 
    
         
            +
             
     | 
| 
      
 270 
     | 
    
         
            +
                    finally:
         
     | 
| 
      
 271 
     | 
    
         
            +
                        # Restore original state (always clean up, even if errors occurred)
         
     | 
| 
      
 272 
     | 
    
         
            +
                        if temp_pyproject_created:
         
     | 
| 
      
 273 
     | 
    
         
            +
                            if Path("pyproject.toml").exists():
         
     | 
| 
      
 274 
     | 
    
         
            +
                                Path("pyproject.toml").unlink()
         
     | 
| 
      
 275 
     | 
    
         
            +
                            if backup_created and Path("pyproject.toml.build.bak").exists():
         
     | 
| 
      
 276 
     | 
    
         
            +
                                Path("pyproject.toml.build.bak").rename("pyproject.toml")
         
     | 
| 
       271 
277 
     | 
    
         | 
| 
       272 
278 
     | 
    
         
             
                except FileNotFoundError:
         
     | 
| 
       273 
279 
     | 
    
         
             
                    print(f"Error: {pyproject_path} not found.")
         
     | 
| 
         @@ -12,7 +12,7 @@ dayhoff_tools/cli/engine/shared.py,sha256=Ecx6I1jtzmxQDn3BezKpgpQ4SJeZf4SZjUCLg- 
     | 
|
| 
       12 
12 
     | 
    
         
             
            dayhoff_tools/cli/engine/studio_commands.py,sha256=VwTQujz32-uMcYusDRE73SdzRpgvIkv7ZAF4zRv6AzA,30266
         
     | 
| 
       13 
13 
     | 
    
         
             
            dayhoff_tools/cli/main.py,sha256=Ii5boey--93yGthB_eS2LC7ZR3WHGsJXDHY7uElEtso,6169
         
     | 
| 
       14 
14 
     | 
    
         
             
            dayhoff_tools/cli/swarm_commands.py,sha256=5EyKj8yietvT5lfoz8Zx0iQvVaNgc3SJX1z2zQR6o6M,5614
         
     | 
| 
       15 
     | 
    
         
            -
            dayhoff_tools/cli/utility_commands.py,sha256= 
     | 
| 
      
 15 
     | 
    
         
            +
            dayhoff_tools/cli/utility_commands.py,sha256=46WAySWDFUgwP_Vkr1L4g1xpZOu38r-9UHJhJpRPMnA,42640
         
     | 
| 
       16 
16 
     | 
    
         
             
            dayhoff_tools/deployment/base.py,sha256=48KE76QlWMeIZJefcBOZVbyChS2V_mgs7IQ31odPV2o,17806
         
     | 
| 
       17 
17 
     | 
    
         
             
            dayhoff_tools/deployment/deploy_aws.py,sha256=gfqh09hGbz0q3oPqVm0imd_CEjKF2k8moGNRIL26qqE,18614
         
     | 
| 
       18 
18 
     | 
    
         
             
            dayhoff_tools/deployment/deploy_gcp.py,sha256=xgaOVsUDmP6wSEMYNkm1yRNcVskfdz80qJtCulkBIAM,8860
         
     | 
| 
         @@ -33,7 +33,7 @@ dayhoff_tools/intake/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJq 
     | 
|
| 
       33 
33 
     | 
    
         
             
            dayhoff_tools/logs.py,sha256=DKdeP0k0kliRcilwvX0mUB2eipO5BdWUeHwh-VnsICs,838
         
     | 
| 
       34 
34 
     | 
    
         
             
            dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
         
     | 
| 
       35 
35 
     | 
    
         
             
            dayhoff_tools/warehouse.py,sha256=UETBtZD3r7WgvURqfGbyHlT7cxoiVq8isjzMuerKw8I,24475
         
     | 
| 
       36 
     | 
    
         
            -
            dayhoff_tools-1.11. 
     | 
| 
       37 
     | 
    
         
            -
            dayhoff_tools-1.11. 
     | 
| 
       38 
     | 
    
         
            -
            dayhoff_tools-1.11. 
     | 
| 
       39 
     | 
    
         
            -
            dayhoff_tools-1.11. 
     | 
| 
      
 36 
     | 
    
         
            +
            dayhoff_tools-1.11.4.dist-info/METADATA,sha256=3aHs-3Zmst0iz9G1VmPuLPHgmBjkVoG7Y-PESX5AlzM,2980
         
     | 
| 
      
 37 
     | 
    
         
            +
            dayhoff_tools-1.11.4.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
         
     | 
| 
      
 38 
     | 
    
         
            +
            dayhoff_tools-1.11.4.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
         
     | 
| 
      
 39 
     | 
    
         
            +
            dayhoff_tools-1.11.4.dist-info/RECORD,,
         
     | 
| 
         
            File without changes
         
     | 
| 
         
            File without changes
         
     |