dayhoff-tools 1.1.6__py3-none-any.whl → 1.1.8__py3-none-any.whl

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Files changed (5) hide show
  1. dayhoff_tools/deployment/processors.py +1 -1
  2. {dayhoff_tools-1.1.6.dist-info → dayhoff_tools-1.1.8.dist-info}/METADATA +12 -16
  3. {dayhoff_tools-1.1.6.dist-info → dayhoff_tools-1.1.8.dist-info}/RECORD +5 -5
  4. {dayhoff_tools-1.1.6.dist-info → dayhoff_tools-1.1.8.dist-info}/WHEEL +0 -0
  5. {dayhoff_tools-1.1.6.dist-info → dayhoff_tools-1.1.8.dist-info}/entry_points.txt +0 -0
dayhoff_tools/deployment/processors.py CHANGED
@@ -160,7 +160,7 @@ class MMSeqsProfileProcessor(Processor):
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  self.num_threads = str(num_threads) # MMseqs2 expects string for threads
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  default_mmseqs_args = {
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- "memory_limit_gb": "30",
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+ "memory_limit_gb": "25",
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  "evalue": "10",
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  "sensitivity": "7.5",
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  "max_seqs_search": "300",
{dayhoff_tools-1.1.6.dist-info → dayhoff_tools-1.1.8.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.1.6
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+ Version: 1.1.8
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
@@ -10,27 +10,23 @@ Classifier: Programming Language :: Python :: 3.10
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  Classifier: Programming Language :: Python :: 3.11
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  Classifier: Programming Language :: Python :: 3.12
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  Classifier: Programming Language :: Python :: 3.13
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- Provides-Extra: lite
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- Requires-Dist: biopython (>=1.84)
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- Requires-Dist: boto3 (>=1.36.8)
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- Requires-Dist: docker (>=7.1.0)
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- Requires-Dist: fair-esm (>=2.0.0)
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+ Provides-Extra: full
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+ Requires-Dist: biopython (>=1.84) ; extra == "full"
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+ Requires-Dist: boto3 (>=1.36.8) ; extra == "full"
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+ Requires-Dist: docker (>=7.1.0) ; extra == "full"
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+ Requires-Dist: fair-esm (>=2.0.0) ; extra == "full"
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  Requires-Dist: firebase-admin (>=6.5.0)
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- Requires-Dist: firebase-admin (>=6.5.0) ; extra == "lite"
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- Requires-Dist: h5py (>=3.11.0)
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- Requires-Dist: pandas (>=2.2.3)
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+ Requires-Dist: h5py (>=3.11.0) ; extra == "full"
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+ Requires-Dist: pandas (>=2.2.3) ; extra == "full"
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  Requires-Dist: pyyaml (>=6.0)
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- Requires-Dist: pyyaml (>=6.0) ; extra == "lite"
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  Requires-Dist: questionary (>=2.0.1)
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- Requires-Dist: rdkit-pypi (>=2022.9.5)
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+ Requires-Dist: rdkit-pypi (>=2022.9.5) ; extra == "full"
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  Requires-Dist: requests (>=2.31.0)
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- Requires-Dist: requests (>=2.31.0) ; extra == "lite"
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- Requires-Dist: sentencepiece (>=0.2.0)
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- Requires-Dist: sqlalchemy (>=2.0.40,<3.0.0)
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+ Requires-Dist: sentencepiece (>=0.2.0) ; extra == "full"
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+ Requires-Dist: sqlalchemy (>=2.0.40,<3.0.0) ; extra == "full"
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  Requires-Dist: toml (>=0.10)
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- Requires-Dist: transformers (==4.36.2)
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+ Requires-Dist: transformers (==4.36.2) ; extra == "full"
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  Requires-Dist: typer (>=0.9.0)
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- Requires-Dist: typer (>=0.9.0) ; extra == "lite"
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  Description-Content-Type: text/markdown
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  # dayhoff-tools
{dayhoff_tools-1.1.6.dist-info → dayhoff_tools-1.1.8.dist-info}/RECORD RENAMED
@@ -11,7 +11,7 @@ dayhoff_tools/deployment/deploy_aws.py,sha256=O0gQxHioSU_sNU8T8MD4wSOPvWc--V8eRR
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  dayhoff_tools/deployment/deploy_gcp.py,sha256=DxBM4sUzwPK9RWLP9bSfr38n1HHl-TVrp4TsbdN8pUA,5795
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  dayhoff_tools/deployment/deploy_utils.py,sha256=StFwbqnr2_FWiKVg3xnJF4kagTHzndqqDkpaIOaAn_4,26027
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  dayhoff_tools/deployment/job_runner.py,sha256=4tmdplpvqSE9bVxRWHo2U5kwkYrYod0Uwzpg2Q7qG5o,4850
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- dayhoff_tools/deployment/processors.py,sha256=yex3bWunFLuzHU6jV-b0ab4w8r-AI4qkx907ManROAg,16857
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+ dayhoff_tools/deployment/processors.py,sha256=rP-XTqJKGbebUzmDpIKv4cbmn1-P9O-0gZJEpLE9Pto,16857
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  dayhoff_tools/deployment/swarm.py,sha256=MGcS2_x4RNFtnVjWlU_SwNfhICz8NlGYr9cYBK4ZKDA,21688
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  dayhoff_tools/embedders.py,sha256=CRgcb2z7KeeFrRQawyUZuJ4Yi0-J5jSr0hwuRhjG_FI,36513
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  dayhoff_tools/fasta.py,sha256=e7xw3pInoupqCGE0-fJTOzmW_earL1M7qPyoqIPfUT4,46269
@@ -26,7 +26,7 @@ dayhoff_tools/intake/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJq
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  dayhoff_tools/logs.py,sha256=DKdeP0k0kliRcilwvX0mUB2eipO5BdWUeHwh-VnsICs,838
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  dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
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  dayhoff_tools/warehouse.py,sha256=TqV8nex1AluNaL4JuXH5zuu9P7qmE89lSo6f_oViy6U,14965
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- dayhoff_tools-1.1.6.dist-info/METADATA,sha256=HRrnLM_xID_Tq-ksoVrDkuYVxQWniXpY0FtdhyMU5DE,2252
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- dayhoff_tools-1.1.6.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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- dayhoff_tools-1.1.6.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
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- dayhoff_tools-1.1.6.dist-info/RECORD,,
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+ dayhoff_tools-1.1.8.dist-info/METADATA,sha256=kwiI9SFhMdafy-vG0GuClaBefHGufvC7LH86QqLmZr8,2224
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+ dayhoff_tools-1.1.8.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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+ dayhoff_tools-1.1.8.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
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+ dayhoff_tools-1.1.8.dist-info/RECORD,,