dayhoff-tools 1.1.43__py3-none-any.whl → 1.2.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (31) hide show
  1. dayhoff_tools/__init__.py +0 -0
  2. dayhoff_tools/chemistry/standardizer.py +0 -0
  3. dayhoff_tools/chemistry/utils.py +0 -0
  4. dayhoff_tools/cli/__init__.py +0 -0
  5. dayhoff_tools/cli/cloud_commands.py +0 -0
  6. dayhoff_tools/cli/main.py +0 -0
  7. dayhoff_tools/cli/swarm_commands.py +0 -0
  8. dayhoff_tools/cli/utility_commands.py +0 -0
  9. dayhoff_tools/deployment/base.py +2 -2
  10. dayhoff_tools/deployment/deploy_aws.py +0 -0
  11. dayhoff_tools/deployment/deploy_gcp.py +0 -0
  12. dayhoff_tools/deployment/job_runner.py +0 -0
  13. dayhoff_tools/deployment/processors.py +0 -0
  14. dayhoff_tools/deployment/swarm.py +0 -0
  15. dayhoff_tools/embedders.py +0 -0
  16. dayhoff_tools/fasta.py +0 -0
  17. dayhoff_tools/file_ops.py +0 -0
  18. dayhoff_tools/h5.py +0 -0
  19. dayhoff_tools/intake/gcp.py +0 -0
  20. dayhoff_tools/intake/gtdb.py +0 -0
  21. dayhoff_tools/intake/kegg.py +0 -0
  22. dayhoff_tools/intake/mmseqs.py +0 -0
  23. dayhoff_tools/intake/structure.py +0 -0
  24. dayhoff_tools/intake/uniprot.py +0 -0
  25. dayhoff_tools/logs.py +0 -0
  26. dayhoff_tools/sqlite.py +0 -0
  27. dayhoff_tools/warehouse.py +0 -0
  28. {dayhoff_tools-1.1.43.dist-info → dayhoff_tools-1.2.0.dist-info}/METADATA +1 -1
  29. {dayhoff_tools-1.1.43.dist-info → dayhoff_tools-1.2.0.dist-info}/RECORD +5 -5
  30. {dayhoff_tools-1.1.43.dist-info → dayhoff_tools-1.2.0.dist-info}/WHEEL +0 -0
  31. {dayhoff_tools-1.1.43.dist-info → dayhoff_tools-1.2.0.dist-info}/entry_points.txt +0 -0
dayhoff_tools/__init__.py CHANGED
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dayhoff_tools/chemistry/standardizer.py CHANGED
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dayhoff_tools/chemistry/utils.py CHANGED
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dayhoff_tools/cli/__init__.py CHANGED
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dayhoff_tools/cli/cloud_commands.py CHANGED
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dayhoff_tools/cli/main.py CHANGED
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dayhoff_tools/cli/swarm_commands.py CHANGED
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dayhoff_tools/cli/utility_commands.py CHANGED
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dayhoff_tools/deployment/base.py CHANGED
@@ -281,7 +281,7 @@ def run_container(config: dict, image_uri: str, mode: str) -> None:
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  4. Handles container logs for detached mode
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  The container name is generated using:
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- - Username (from LOCAL_USER env var)
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+ - Username (from LOCAL_USER or USER env var)
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  - Timestamp (YYYYMMDD_HHMMSS format)
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  Args:
@@ -299,7 +299,7 @@ def run_container(config: dict, image_uri: str, mode: str) -> None:
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  )
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  # Generate unique container name
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- username = os.getenv("LOCAL_USER", "unknown_user")
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+ username = os.getenv("LOCAL_USER") or os.getenv("USER", "unknown_user")
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  timestamp = datetime.datetime.now().strftime("%Y%m%d_%H%M%S")
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  container_name = f"{username}_job_{timestamp}"
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dayhoff_tools/deployment/deploy_aws.py CHANGED
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dayhoff_tools/deployment/deploy_gcp.py CHANGED
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dayhoff_tools/deployment/job_runner.py CHANGED
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dayhoff_tools/deployment/processors.py CHANGED
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dayhoff_tools/deployment/swarm.py CHANGED
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dayhoff_tools/embedders.py CHANGED
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dayhoff_tools/fasta.py CHANGED
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dayhoff_tools/file_ops.py CHANGED
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dayhoff_tools/h5.py CHANGED
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dayhoff_tools/intake/gcp.py CHANGED
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dayhoff_tools/intake/gtdb.py CHANGED
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dayhoff_tools/intake/kegg.py CHANGED
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dayhoff_tools/intake/mmseqs.py CHANGED
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dayhoff_tools/intake/structure.py CHANGED
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dayhoff_tools/intake/uniprot.py CHANGED
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dayhoff_tools/logs.py CHANGED
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dayhoff_tools/sqlite.py CHANGED
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dayhoff_tools/warehouse.py CHANGED
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{dayhoff_tools-1.1.43.dist-info → dayhoff_tools-1.2.0.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.1.43
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+ Version: 1.2.0
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
{dayhoff_tools-1.1.43.dist-info → dayhoff_tools-1.2.0.dist-info}/RECORD RENAMED
@@ -6,7 +6,7 @@ dayhoff_tools/cli/cloud_commands.py,sha256=NGux28-cjDyCADF-L1tjdEMzkCMYX8V4xNvpK
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  dayhoff_tools/cli/main.py,sha256=47EGb28ALaYFc7oAUGlY1D66AIDmc4RZiXxN-gPVrpQ,4519
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  dayhoff_tools/cli/swarm_commands.py,sha256=5EyKj8yietvT5lfoz8Zx0iQvVaNgc3SJX1z2zQR6o6M,5614
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  dayhoff_tools/cli/utility_commands.py,sha256=ER4VrJt4hu904MwrcltUXjwBWT4uFrP-aPXjdXyT3F8,24685
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- dayhoff_tools/deployment/base.py,sha256=8tXwsPYvRo-zV-aNhHw1c7Rji-KWg8S5xoCCznFnVVI,17412
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+ dayhoff_tools/deployment/base.py,sha256=mYp560l6hSDFtyY2H42VoM8k9VUzfwuiyh9Knqpgc28,17441
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  dayhoff_tools/deployment/deploy_aws.py,sha256=GvZpE2YIFA5Dl9rkAljFjtUypmPDNbWgw8NicHYTP24,18265
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  dayhoff_tools/deployment/deploy_gcp.py,sha256=xgaOVsUDmP6wSEMYNkm1yRNcVskfdz80qJtCulkBIAM,8860
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  dayhoff_tools/deployment/deploy_utils.py,sha256=StFwbqnr2_FWiKVg3xnJF4kagTHzndqqDkpaIOaAn_4,26027
@@ -26,7 +26,7 @@ dayhoff_tools/intake/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJq
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  dayhoff_tools/logs.py,sha256=DKdeP0k0kliRcilwvX0mUB2eipO5BdWUeHwh-VnsICs,838
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  dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
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  dayhoff_tools/warehouse.py,sha256=TqV8nex1AluNaL4JuXH5zuu9P7qmE89lSo6f_oViy6U,14965
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- dayhoff_tools-1.1.43.dist-info/METADATA,sha256=S3WFgeHSXhXJUg6E8nHcSBmbGktzd9B-2A7LIdX1c9k,2843
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- dayhoff_tools-1.1.43.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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- dayhoff_tools-1.1.43.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
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- dayhoff_tools-1.1.43.dist-info/RECORD,,
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+ dayhoff_tools-1.2.0.dist-info/METADATA,sha256=X6kZf9yrTT0RrpDQCv2SrkRElXDocXcdhOGXhMTZO84,2842
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+ dayhoff_tools-1.2.0.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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+ dayhoff_tools-1.2.0.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
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+ dayhoff_tools-1.2.0.dist-info/RECORD,,