dayhoff-tools 1.1.27__py3-none-any.whl → 1.1.29__py3-none-any.whl

dayhoff_tools/deployment/processors.py

@@ -7,8 +7,6 @@ import subprocess
 from abc import ABC, abstractmethod
 from pathlib import Path
 
-from dayhoff_tools.fasta import subset_fasta
-
 logger = logging.getLogger(__name__)
 
 
@@ -442,9 +440,12 @@ class MMSeqsProfileProcessor(Processor):
                         writer = csv.writer(csvfile)
                         writer.writerow(m8_columns)
                 else:
-                    with open(intermediate_results_m8_file, "r") as m8file, open(
-                        intermediate_results_as_csv_file, "w", newline=""
-                    ) as csvfile:
+                    with (
+                        open(intermediate_results_m8_file, "r") as m8file,
+                        open(
+                            intermediate_results_as_csv_file, "w", newline=""
+                        ) as csvfile,
+                    ):
                         writer = csv.writer(csvfile)
                         writer.writerow(m8_columns)
                         for line in m8file:

dayhoff_tools/fasta.py

@@ -8,7 +8,7 @@ import sqlite3
 import time
 from functools import partial
 from pathlib import Path
-from typing import Any, Dict, Iterator, List, Optional, Set, Tuple, Union
+from typing import Dict, Iterator, List, Optional, Set, Tuple, Union
 
 import requests
 from Bio import SeqIO

{dayhoff_tools-1.1.27.dist-info → dayhoff_tools-1.1.29.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: dayhoff-tools
-Version: 1.1.27
+Version: 1.1.29
 Summary: Common tools for all the repos at Dayhoff Labs
 Author: Daniel Martin-Alarcon
 Author-email: dma@dayhofflabs.com
@@ -34,6 +34,7 @@ Requires-Dist: sqlalchemy (>=2.0.40,<3.0.0) ; extra == "full"
 Requires-Dist: toml (>=0.10)
 Requires-Dist: torch (>=2.4.0) ; extra == "embedders"
 Requires-Dist: tqdm (>=4.67.1) ; extra == "embedders"
+Requires-Dist: tqdm (>=4.67.1) ; extra == "full"
 Requires-Dist: transformers (==4.36.2) ; extra == "full"
 Requires-Dist: transformers (>=4.36.2) ; extra == "embedders"
 Requires-Dist: typer (>=0.9.0)

{dayhoff_tools-1.1.27.dist-info → dayhoff_tools-1.1.29.dist-info}/RECORD

@@ -11,10 +11,10 @@ dayhoff_tools/deployment/deploy_aws.py,sha256=O0gQxHioSU_sNU8T8MD4wSOPvWc--V8eRR
 dayhoff_tools/deployment/deploy_gcp.py,sha256=DxBM4sUzwPK9RWLP9bSfr38n1HHl-TVrp4TsbdN8pUA,5795
 dayhoff_tools/deployment/deploy_utils.py,sha256=StFwbqnr2_FWiKVg3xnJF4kagTHzndqqDkpaIOaAn_4,26027
 dayhoff_tools/deployment/job_runner.py,sha256=4tmdplpvqSE9bVxRWHo2U5kwkYrYod0Uwzpg2Q7qG5o,4850
-dayhoff_tools/deployment/processors.py,sha256=Ao4hU4rEXlyvLq-8wt8syqnfB05N7fIKYtjjdKCmx3g,22695
+dayhoff_tools/deployment/processors.py,sha256=HFu3Ty7eebWLnyHQIjLuqjsfnqtnDbFZFH7z4eHDZIo,22730
 dayhoff_tools/deployment/swarm.py,sha256=MGcS2_x4RNFtnVjWlU_SwNfhICz8NlGYr9cYBK4ZKDA,21688
 dayhoff_tools/embedders.py,sha256=svP_ksm3FdyVZ8i8R9R5uoGu2qI_hVQ_eztG0drXkN8,36477
-dayhoff_tools/fasta.py,sha256=HJ25D_u5F-tU6fZMkJfIhvqMSmnR32JK1QdCPXoHJ5g,49785
+dayhoff_tools/fasta.py,sha256=Ls6AG84IgG8COgAefqB3KS6iMbnixP_Up5EwUur-VUs,49780
 dayhoff_tools/file_ops.py,sha256=JlGowvr-CUJFidV-4g_JmhUTN9bsYuaxtqKmnKomm-Q,8506
 dayhoff_tools/h5.py,sha256=j1nxxaiHsMidVX_XwB33P1Pz9d7K8ZKiDZwJWQUUQSY,21158
 dayhoff_tools/intake/gcp.py,sha256=uCeEskhbEwJIYpN6ne6siT1dbpTizCjjel-hRe0kReE,3030
@@ -26,7 +26,7 @@ dayhoff_tools/intake/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJq
 dayhoff_tools/logs.py,sha256=DKdeP0k0kliRcilwvX0mUB2eipO5BdWUeHwh-VnsICs,838
 dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
 dayhoff_tools/warehouse.py,sha256=TqV8nex1AluNaL4JuXH5zuu9P7qmE89lSo6f_oViy6U,14965
-dayhoff_tools-1.1.27.dist-info/METADATA,sha256=b49Gayl-plG0GhoElOAHZm_jAG2qWHNEdkcRbMfEJTM,2761
-dayhoff_tools-1.1.27.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
-dayhoff_tools-1.1.27.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
-dayhoff_tools-1.1.27.dist-info/RECORD,,
+dayhoff_tools-1.1.29.dist-info/METADATA,sha256=MvXJheXMvDNdVfreK1ZRPeupmBAv0D5LxP5qZilW0Fg,2810
+dayhoff_tools-1.1.29.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
+dayhoff_tools-1.1.29.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
+dayhoff_tools-1.1.29.dist-info/RECORD,,