dayhoff-tools 1.1.1__py3-none-any.whl → 1.1.3__py3-none-any.whl

dayhoff_tools/cli/main.py

@@ -9,7 +9,6 @@ from dayhoff_tools.cli.utility_commands import (
     get_ancestry,
     import_from_warehouse_typer,
     install_dependencies,
-    rebuild_devcontainer_file,
     test_github_actions_locally,
     update_dependencies,
 )
@@ -23,13 +22,12 @@ app.command("clean")(delete_local_branch)
 app.command(
     "install", help="Install dependencies based on pyproject.toml and sync environment."
 )(install_dependencies)
-app.command(
-    "update", help="Update dependencies (--all or --dayhoff) and sync environment."
-)(update_dependencies)
+app.command("update", help="Update dayhoff-tools (or all deps) and sync environment.")(
+    update_dependencies
+)
 
 # Other Utilities
 app.command("gha")(test_github_actions_locally)
-app.command("rebuild")(rebuild_devcontainer_file)
 app.command("wadd")(add_to_warehouse_typer)
 app.command("wancestry")(get_ancestry)
 app.command("wimport")(import_from_warehouse_typer)

dayhoff_tools/cli/utility_commands.py

@@ -23,17 +23,6 @@ def test_github_actions_locally():
         print(f"Error occurred while running the script: {e}")
 
 
-def rebuild_devcontainer_file():
-    """Run the script prepare_for_build.py."""
-    script_path = ".devcontainer/scripts/prepare_for_build.py"
-
-    try:
-        subprocess.check_call([sys.executable, script_path])
-        print("Script ran successfully!")
-    except subprocess.CalledProcessError as e:
-        print(f"Error occurred while running the script: {e}")
-
-
 def get_ancestry(filepath: str) -> None:
     """Take a .dvc file created from import, and generate an ancestry entry
     that can be manually copied into other .dvc files."""
@@ -500,7 +489,7 @@ def update_dependencies(
             try:
                 content = pyproject_path.read_text()
                 pattern = re.compile(
-                    "^(\s*['\"])dayhoff-tools(?:[><=~^][^'\"\\[,]*)?(['\"]\S*)$",
+                    "^(\s*['\"])dayhoff-tools(?:[><=~^][^'\"\[,]*)?(['\"].*)$",  # Match rest of line
                     re.MULTILINE,
                 )
                 package_name = "dayhoff-tools"

{dayhoff_tools-1.1.1.dist-info → dayhoff_tools-1.1.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: dayhoff-tools
-Version: 1.1.1
+Version: 1.1.3
 Summary: Common tools for all the repos at Dayhoff Labs
 Author: Daniel Martin-Alarcon
 Author-email: dma@dayhofflabs.com

{dayhoff_tools-1.1.1.dist-info → dayhoff_tools-1.1.3.dist-info}/RECORD

@@ -3,9 +3,9 @@ dayhoff_tools/chemistry/standardizer.py,sha256=uMn7VwHnx02nc404eO6fRuS4rsl4dvSPf
 dayhoff_tools/chemistry/utils.py,sha256=jt-7JgF-GeeVC421acX-bobKbLU_X94KNOW24p_P-_M,2257
 dayhoff_tools/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dayhoff_tools/cli/cloud_commands.py,sha256=KiYEuD3nSg8QPWBYfrhdze2La_CJe4iqK-8uOAHyS8U,35827
-dayhoff_tools/cli/main.py,sha256=O-kPX0Di3_W0yBd-jSzQrOKm4K3deV_-jQhOom6Ir5g,3875
+dayhoff_tools/cli/main.py,sha256=Ae0Bee2VjRzUge1I2DJoDVqoXpQnKfxGhdiMSmIWJwo,3788
 dayhoff_tools/cli/swarm_commands.py,sha256=5EyKj8yietvT5lfoz8Zx0iQvVaNgc3SJX1z2zQR6o6M,5614
-dayhoff_tools/cli/utility_commands.py,sha256=KgF_shWIfzZyKVl9VKqhVm5WJwp0YCvYFadnN3fLZeU,21211
+dayhoff_tools/cli/utility_commands.py,sha256=KCcywhwwDAFnDcts4f_RrgikX9EpUsqdJgFgu59RNnk,20863
 dayhoff_tools/deployment/base.py,sha256=u-AjbtHnFLoLt33dhYXHIpV-6jcieMEHHGBGN_U9Hm0,15626
 dayhoff_tools/deployment/deploy_aws.py,sha256=O0gQxHioSU_sNU8T8MD4wSOPvWc--V8eRRZzlRu035I,16446
 dayhoff_tools/deployment/deploy_gcp.py,sha256=DxBM4sUzwPK9RWLP9bSfr38n1HHl-TVrp4TsbdN8pUA,5795
@@ -25,7 +25,7 @@ dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
 dayhoff_tools/structure.py,sha256=ufN3gAodQxhnt7psK1VTQeu9rKERmo_PhoxIbB4QKMw,27660
 dayhoff_tools/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJqE4,16456
 dayhoff_tools/warehouse.py,sha256=TqV8nex1AluNaL4JuXH5zuu9P7qmE89lSo6f_oViy6U,14965
-dayhoff_tools-1.1.1.dist-info/METADATA,sha256=UQv5qilixD2tR0TaF5UHN22BZKPqg7L2bd9my01EyqM,2213
-dayhoff_tools-1.1.1.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
-dayhoff_tools-1.1.1.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
-dayhoff_tools-1.1.1.dist-info/RECORD,,
+dayhoff_tools-1.1.3.dist-info/METADATA,sha256=arjS-zRFZ1Dy1zhtFAkCFFHeeHJFQ-Joud-pitEis8w,2213
+dayhoff_tools-1.1.3.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
+dayhoff_tools-1.1.3.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
+dayhoff_tools-1.1.3.dist-info/RECORD,,