dayhoff-tools 1.1.10__py3-none-any.whl → 1.1.12__py3-none-any.whl

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Files changed (5) hide show
  1. dayhoff_tools/deployment/processors.py +11 -1
  2. {dayhoff_tools-1.1.10.dist-info → dayhoff_tools-1.1.12.dist-info}/METADATA +1 -1
  3. {dayhoff_tools-1.1.10.dist-info → dayhoff_tools-1.1.12.dist-info}/RECORD +5 -5
  4. {dayhoff_tools-1.1.10.dist-info → dayhoff_tools-1.1.12.dist-info}/WHEEL +0 -0
  5. {dayhoff_tools-1.1.10.dist-info → dayhoff_tools-1.1.12.dist-info}/entry_points.txt +0 -0
dayhoff_tools/deployment/processors.py CHANGED
@@ -408,7 +408,17 @@ class MMSeqsProfileProcessor(Processor):
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  # 9. Create subdatabase of hits from original target_db
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  self._run_mmseqs_command(
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- ["mmseqs", "createsubdb", str(result_db), str(target_db), str(hits_db)],
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+ [
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+ "mmseqs",
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+ "createsubdb",
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+ str(
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+ target_db
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+ ), # inputDB: database to filter (all target sequences)
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+ str(result_db), # filterDB: IDs appearing in result_db (2nd column)
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+ str(hits_db),
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+ "--subdb-mode",
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+ "1", # Use mode 1 to extract target sequences (2nd column)
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+ ],
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  "Create hits subDB from target_db",
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  run_base_dir,
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  )
{dayhoff_tools-1.1.10.dist-info → dayhoff_tools-1.1.12.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.1.10
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+ Version: 1.1.12
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
{dayhoff_tools-1.1.10.dist-info → dayhoff_tools-1.1.12.dist-info}/RECORD RENAMED
@@ -11,7 +11,7 @@ dayhoff_tools/deployment/deploy_aws.py,sha256=O0gQxHioSU_sNU8T8MD4wSOPvWc--V8eRR
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  dayhoff_tools/deployment/deploy_gcp.py,sha256=DxBM4sUzwPK9RWLP9bSfr38n1HHl-TVrp4TsbdN8pUA,5795
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  dayhoff_tools/deployment/deploy_utils.py,sha256=StFwbqnr2_FWiKVg3xnJF4kagTHzndqqDkpaIOaAn_4,26027
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  dayhoff_tools/deployment/job_runner.py,sha256=4tmdplpvqSE9bVxRWHo2U5kwkYrYod0Uwzpg2Q7qG5o,4850
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- dayhoff_tools/deployment/processors.py,sha256=-0s-mz6jgMJk78KrKQJDNbz5GZyg7jho0IeGH462FlY,19471
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+ dayhoff_tools/deployment/processors.py,sha256=1MjsXh9FJnp_8BC8bmn_OTo_P6HEom1eanvBhcMadTI,19859
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  dayhoff_tools/deployment/swarm.py,sha256=MGcS2_x4RNFtnVjWlU_SwNfhICz8NlGYr9cYBK4ZKDA,21688
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  dayhoff_tools/embedders.py,sha256=CRgcb2z7KeeFrRQawyUZuJ4Yi0-J5jSr0hwuRhjG_FI,36513
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  dayhoff_tools/fasta.py,sha256=e7xw3pInoupqCGE0-fJTOzmW_earL1M7qPyoqIPfUT4,46269
@@ -26,7 +26,7 @@ dayhoff_tools/intake/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJq
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  dayhoff_tools/logs.py,sha256=DKdeP0k0kliRcilwvX0mUB2eipO5BdWUeHwh-VnsICs,838
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  dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
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  dayhoff_tools/warehouse.py,sha256=TqV8nex1AluNaL4JuXH5zuu9P7qmE89lSo6f_oViy6U,14965
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- dayhoff_tools-1.1.10.dist-info/METADATA,sha256=0YZZ2uVMRyz4nXf3W9LpL3_SVTMwGahkLHaB-_cnM7w,2225
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- dayhoff_tools-1.1.10.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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- dayhoff_tools-1.1.10.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
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- dayhoff_tools-1.1.10.dist-info/RECORD,,
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+ dayhoff_tools-1.1.12.dist-info/METADATA,sha256=h-fxcltAUMl48kcW27BMzLNMEl1vsJYe4ROIwAMFh7I,2225
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+ dayhoff_tools-1.1.12.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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+ dayhoff_tools-1.1.12.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
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+ dayhoff_tools-1.1.12.dist-info/RECORD,,