dayhoff-tools 1.1.10__py3-none-any.whl → 1.1.11__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (5) hide show
  1. dayhoff_tools/deployment/processors.py +9 -1
  2. {dayhoff_tools-1.1.10.dist-info → dayhoff_tools-1.1.11.dist-info}/METADATA +1 -1
  3. {dayhoff_tools-1.1.10.dist-info → dayhoff_tools-1.1.11.dist-info}/RECORD +5 -5
  4. {dayhoff_tools-1.1.10.dist-info → dayhoff_tools-1.1.11.dist-info}/WHEEL +0 -0
  5. {dayhoff_tools-1.1.10.dist-info → dayhoff_tools-1.1.11.dist-info}/entry_points.txt +0 -0
dayhoff_tools/deployment/processors.py CHANGED
@@ -408,7 +408,15 @@ class MMSeqsProfileProcessor(Processor):
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  # 9. Create subdatabase of hits from original target_db
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  self._run_mmseqs_command(
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- ["mmseqs", "createsubdb", str(result_db), str(target_db), str(hits_db)],
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+ [
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+ "mmseqs",
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+ "createsubdb",
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+ str(result_db),
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+ str(target_db),
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+ str(hits_db),
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+ "--subdb-mode",
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+ "1", # Use mode 1 to extract target sequences (2nd column) from result_db
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+ ],
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  "Create hits subDB from target_db",
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  run_base_dir,
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  )
{dayhoff_tools-1.1.10.dist-info → dayhoff_tools-1.1.11.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.1.10
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+ Version: 1.1.11
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
{dayhoff_tools-1.1.10.dist-info → dayhoff_tools-1.1.11.dist-info}/RECORD RENAMED
@@ -11,7 +11,7 @@ dayhoff_tools/deployment/deploy_aws.py,sha256=O0gQxHioSU_sNU8T8MD4wSOPvWc--V8eRR
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  dayhoff_tools/deployment/deploy_gcp.py,sha256=DxBM4sUzwPK9RWLP9bSfr38n1HHl-TVrp4TsbdN8pUA,5795
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  dayhoff_tools/deployment/deploy_utils.py,sha256=StFwbqnr2_FWiKVg3xnJF4kagTHzndqqDkpaIOaAn_4,26027
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  dayhoff_tools/deployment/job_runner.py,sha256=4tmdplpvqSE9bVxRWHo2U5kwkYrYod0Uwzpg2Q7qG5o,4850
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- dayhoff_tools/deployment/processors.py,sha256=-0s-mz6jgMJk78KrKQJDNbz5GZyg7jho0IeGH462FlY,19471
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+ dayhoff_tools/deployment/processors.py,sha256=qlQUElJIQSf8-m-rgZ10OIw_PQgkaNv_7XUPF1MpI5Y,19721
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  dayhoff_tools/deployment/swarm.py,sha256=MGcS2_x4RNFtnVjWlU_SwNfhICz8NlGYr9cYBK4ZKDA,21688
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  dayhoff_tools/embedders.py,sha256=CRgcb2z7KeeFrRQawyUZuJ4Yi0-J5jSr0hwuRhjG_FI,36513
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  dayhoff_tools/fasta.py,sha256=e7xw3pInoupqCGE0-fJTOzmW_earL1M7qPyoqIPfUT4,46269
@@ -26,7 +26,7 @@ dayhoff_tools/intake/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJq
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  dayhoff_tools/logs.py,sha256=DKdeP0k0kliRcilwvX0mUB2eipO5BdWUeHwh-VnsICs,838
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  dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
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  dayhoff_tools/warehouse.py,sha256=TqV8nex1AluNaL4JuXH5zuu9P7qmE89lSo6f_oViy6U,14965
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- dayhoff_tools-1.1.10.dist-info/METADATA,sha256=0YZZ2uVMRyz4nXf3W9LpL3_SVTMwGahkLHaB-_cnM7w,2225
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- dayhoff_tools-1.1.10.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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- dayhoff_tools-1.1.10.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
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- dayhoff_tools-1.1.10.dist-info/RECORD,,
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+ dayhoff_tools-1.1.11.dist-info/METADATA,sha256=gvycLzu1kBgvCDM3rF0gPB9v7_18oTHp6W6ZBPdaY9Y,2225
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+ dayhoff_tools-1.1.11.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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+ dayhoff_tools-1.1.11.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
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+ dayhoff_tools-1.1.11.dist-info/RECORD,,