dayhoff-tools 1.0.7__py3-none-any.whl → 1.0.8__py3-none-any.whl

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Files changed (5) hide show
  1. dayhoff_tools/fasta.py +2 -2
  2. {dayhoff_tools-1.0.7.dist-info → dayhoff_tools-1.0.8.dist-info}/METADATA +1 -1
  3. {dayhoff_tools-1.0.7.dist-info → dayhoff_tools-1.0.8.dist-info}/RECORD +5 -5
  4. {dayhoff_tools-1.0.7.dist-info → dayhoff_tools-1.0.8.dist-info}/WHEEL +0 -0
  5. {dayhoff_tools-1.0.7.dist-info → dayhoff_tools-1.0.8.dist-info}/entry_points.txt +0 -0
dayhoff_tools/fasta.py CHANGED
@@ -14,7 +14,7 @@ import requests
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  from Bio import SeqIO
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  from Bio.SeqRecord import SeqRecord
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  from tqdm import tqdm
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- from tqdm.notebook import tqdm_notebook
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+ from tqdm.notebook import tqdm as tqdm_notebook
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  logger = logging.getLogger(__name__)
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@@ -923,7 +923,7 @@ def fetch_uniprot_fasta(
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  # Calculate number of batches for progress bar
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  num_batches = math.ceil(len(accession_list) / batch_size)
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- # Process accessions in batches with progress bar
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+ # Process accessions in batches with progress bar (using notebook version)
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  for i in tqdm_notebook(
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  range(0, len(accession_list), batch_size),
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  desc="Downloading sequences",
{dayhoff_tools-1.0.7.dist-info → dayhoff_tools-1.0.8.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: dayhoff-tools
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- Version: 1.0.7
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+ Version: 1.0.8
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  Summary: Common tools for all the repos at Dayhoff Labs
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  Author: Daniel Martin-Alarcon
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  Author-email: dma@dayhofflabs.com
{dayhoff_tools-1.0.7.dist-info → dayhoff_tools-1.0.8.dist-info}/RECORD RENAMED
@@ -14,7 +14,7 @@ dayhoff_tools/deployment/job_runner.py,sha256=4tmdplpvqSE9bVxRWHo2U5kwkYrYod0Uwz
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  dayhoff_tools/deployment/processors.py,sha256=D0oI0az0mWBh7aNZbLUipcQePTVquxuSBUMMCReRPfU,4656
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  dayhoff_tools/deployment/swarm.py,sha256=MGcS2_x4RNFtnVjWlU_SwNfhICz8NlGYr9cYBK4ZKDA,21688
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  dayhoff_tools/embedders.py,sha256=CRgcb2z7KeeFrRQawyUZuJ4Yi0-J5jSr0hwuRhjG_FI,36513
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- dayhoff_tools/fasta.py,sha256=c8QXZ93AxvPMnIjLY8iENei7YGMMAC4npvxv-EJC2-o,40593
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+ dayhoff_tools/fasta.py,sha256=cmnCdvyynKiGcyYSOjknITb-5WLPT_xZwRB8PN8oyV8,40626
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  dayhoff_tools/file_ops.py,sha256=JlGowvr-CUJFidV-4g_JmhUTN9bsYuaxtqKmnKomm-Q,8506
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  dayhoff_tools/gcp.py,sha256=uCeEskhbEwJIYpN6ne6siT1dbpTizCjjel-hRe0kReE,3030
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  dayhoff_tools/h5.py,sha256=j1nxxaiHsMidVX_XwB33P1Pz9d7K8ZKiDZwJWQUUQSY,21158
@@ -25,7 +25,7 @@ dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
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  dayhoff_tools/structure.py,sha256=ufN3gAodQxhnt7psK1VTQeu9rKERmo_PhoxIbB4QKMw,27660
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  dayhoff_tools/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJqE4,16456
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  dayhoff_tools/warehouse.py,sha256=TqV8nex1AluNaL4JuXH5zuu9P7qmE89lSo6f_oViy6U,14965
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- dayhoff_tools-1.0.7.dist-info/METADATA,sha256=bR_2zwNuqx_7L8WMJJUGgc-dvXrn69PAM8ppjBMh6-8,1930
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- dayhoff_tools-1.0.7.dist-info/WHEEL,sha256=fGIA9gx4Qxk2KDKeNJCbOEwSrmLtjWCwzBz351GyrPQ,88
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- dayhoff_tools-1.0.7.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
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- dayhoff_tools-1.0.7.dist-info/RECORD,,
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+ dayhoff_tools-1.0.8.dist-info/METADATA,sha256=Lq5sNvPmJa0zu7EMKyS8ID0moWaqUhoQpbcb1kCphco,1930
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+ dayhoff_tools-1.0.8.dist-info/WHEEL,sha256=fGIA9gx4Qxk2KDKeNJCbOEwSrmLtjWCwzBz351GyrPQ,88
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+ dayhoff_tools-1.0.8.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
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+ dayhoff_tools-1.0.8.dist-info/RECORD,,