dayhoff-tools 1.0.4__py3-none-any.whl → 1.0.5__py3-none-any.whl

dayhoff_tools-1.0.5.dist-info/METADATA

@@ -0,0 +1,58 @@
+Metadata-Version: 2.3
+Name: dayhoff-tools
+Version: 1.0.5
+Summary: Common tools for all the repos at Dayhoff Labs
+Author: Daniel Martin-Alarcon
+Author-email: dma@dayhofflabs.com
+Requires-Python: >=3.10,<4.0
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Provides-Extra: core
+Requires-Dist: biopython (>=1.84) ; extra == "core"
+Requires-Dist: boto3 (>=1.36.8) ; extra == "core"
+Requires-Dist: docker (>=7.1.0) ; extra == "core"
+Requires-Dist: fair-esm (>=2.0.0) ; extra == "core"
+Requires-Dist: firebase-admin (>=6.5.0)
+Requires-Dist: h5py (>=3.11.0) ; extra == "core"
+Requires-Dist: pyyaml (>=6.0)
+Requires-Dist: questionary (>=2.0.1) ; extra == "core"
+Requires-Dist: requests (>=2.31.0)
+Requires-Dist: typer (>=0.9.0)
+Description-Content-Type: text/markdown
+
+# dayhoff-tools
+
+A set of small, sharp tools for everyone at Dayhoff. Hosted on PyPi, so you can Poetry or pip install like everything else.
+
+## Installation
+
+The base package includes minimal dependencies required for core CLI functionality (like job running):
+
+```bash
+pip install dayhoff-tools
+# or
+poetry add dayhoff-tools
+```
+
+### Optional Dependencies
+
+You can install extra sets of dependencies using brackets. Available groups are:
+
+* `core`: Includes common data science and bioinformatics tools (`biopython`, `boto3`, `docker`, `fair-esm`, `h5py`, `questionary`).
+* `dev`: Includes development and testing tools (`black`, `pytest`, `pandas`, `numpy`, `torch`, etc.).
+* `all`: Includes all dependencies from both `core` and `dev`.
+
+**Examples:**
+
+```bash
+# Install with core dependencies
+pip install 'dayhoff-tools[core]'
+poetry add 'dayhoff-tools[core]'
+
+# Install with all dependencies
+pip install 'dayhoff-tools[all]'
+poetry add 'dayhoff-tools[all]'
+```

{dayhoff_tools-1.0.4.dist-info → dayhoff_tools-1.0.5.dist-info}/RECORD

@@ -25,7 +25,7 @@ dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
 dayhoff_tools/structure.py,sha256=ufN3gAodQxhnt7psK1VTQeu9rKERmo_PhoxIbB4QKMw,27660
 dayhoff_tools/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJqE4,16456
 dayhoff_tools/warehouse.py,sha256=TqV8nex1AluNaL4JuXH5zuu9P7qmE89lSo6f_oViy6U,14965
-dayhoff_tools-1.0.4.dist-info/METADATA,sha256=6redvtvKbCTPTcoxILn4dPLj4HrkqJP_M8dYbQdxmaE,3949
-dayhoff_tools-1.0.4.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
-dayhoff_tools-1.0.4.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
-dayhoff_tools-1.0.4.dist-info/RECORD,,
+dayhoff_tools-1.0.5.dist-info/METADATA,sha256=LE_AxsDAgFzG6oW_i2YL3sZOfbC0V1JDpAidC40Yfek,1930
+dayhoff_tools-1.0.5.dist-info/WHEEL,sha256=fGIA9gx4Qxk2KDKeNJCbOEwSrmLtjWCwzBz351GyrPQ,88
+dayhoff_tools-1.0.5.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
+dayhoff_tools-1.0.5.dist-info/RECORD,,

{dayhoff_tools-1.0.4.dist-info → dayhoff_tools-1.0.5.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 2.0.1
+Generator: poetry-core 2.1.2
 Root-Is-Purelib: true
 Tag: py3-none-any

dayhoff_tools-1.0.4.dist-info/METADATA

@@ -1,99 +0,0 @@
-Metadata-Version: 2.3
-Name: dayhoff-tools
-Version: 1.0.4
-Summary: Common tools for all the repos at Dayhoff Labs
-Author: Daniel Martin-Alarcon
-Author-email: dma@dayhofflabs.com
-Requires-Python: >=3.10,<4.0
-Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
-Classifier: Programming Language :: Python :: 3.13
-Provides-Extra: all
-Provides-Extra: core
-Provides-Extra: dev
-Requires-Dist: biopython (>=1.84) ; extra == "all"
-Requires-Dist: biopython (>=1.84) ; extra == "core"
-Requires-Dist: black (>=25.1.0) ; extra == "all"
-Requires-Dist: black (>=25.1.0) ; extra == "dev"
-Requires-Dist: boto3 (>=1.36.8) ; extra == "all"
-Requires-Dist: boto3 (>=1.36.8) ; extra == "core"
-Requires-Dist: colorlog (>=6.8.2) ; extra == "all"
-Requires-Dist: colorlog (>=6.8.2) ; extra == "dev"
-Requires-Dist: docker (>=7.1.0) ; extra == "all"
-Requires-Dist: docker (>=7.1.0) ; extra == "core"
-Requires-Dist: dvc (>=3.48.2) ; extra == "all"
-Requires-Dist: dvc (>=3.48.2) ; extra == "dev"
-Requires-Dist: dvc-gs (>=3.0.1) ; extra == "all"
-Requires-Dist: dvc-gs (>=3.0.1) ; extra == "dev"
-Requires-Dist: fair-esm (>=2.0.0) ; extra == "all"
-Requires-Dist: fair-esm (>=2.0.0) ; extra == "core"
-Requires-Dist: firebase-admin (>=6.5.0)
-Requires-Dist: flake8 (>=7.0.0) ; extra == "all"
-Requires-Dist: flake8 (>=7.0.0) ; extra == "dev"
-Requires-Dist: h5py (>=3.11.0) ; extra == "all"
-Requires-Dist: h5py (>=3.11.0) ; extra == "core"
-Requires-Dist: isort (>=5.13.2) ; extra == "all"
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-Requires-Dist: numpy (<2.0.0) ; extra == "all"
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-Requires-Dist: pandas (>=2.2.3) ; extra == "dev"
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-Requires-Dist: pylint (>=3.1.0) ; extra == "dev"
-Requires-Dist: pytest (>=8.0.2) ; extra == "all"
-Requires-Dist: pytest (>=8.0.2) ; extra == "dev"
-Requires-Dist: pytest-cov (>=4.1.0) ; extra == "all"
-Requires-Dist: pytest-cov (>=4.1.0) ; extra == "dev"
-Requires-Dist: pytest-mock (>=3.12.0) ; extra == "all"
-Requires-Dist: pytest-mock (>=3.12.0) ; extra == "dev"
-Requires-Dist: pyyaml (>=6.0)
-Requires-Dist: questionary (>=2.0.1) ; extra == "all"
-Requires-Dist: questionary (>=2.0.1) ; extra == "core"
-Requires-Dist: rdkit-pypi (>=2022.9.5) ; extra == "all"
-Requires-Dist: rdkit-pypi (>=2022.9.5) ; extra == "dev"
-Requires-Dist: requests (>=2.31.0)
-Requires-Dist: torch (>=1.10.0) ; extra == "all"
-Requires-Dist: torch (>=1.10.0) ; extra == "dev"
-Requires-Dist: torchvision (>=0.11.0) ; extra == "all"
-Requires-Dist: torchvision (>=0.11.0) ; extra == "dev"
-Requires-Dist: transformers (>=4.20.0) ; extra == "all"
-Requires-Dist: transformers (>=4.36.2) ; extra == "dev"
-Requires-Dist: typer (>=0.9.0)
-Description-Content-Type: text/markdown
-
-# dayhoff-tools
-
-A set of small, sharp tools for everyone at Dayhoff. Hosted on PyPi, so you can Poetry or pip install like everything else.
-
-## Installation
-
-The base package includes minimal dependencies required for core CLI functionality (like job running):
-
-```bash
-pip install dayhoff-tools
-# or
-poetry add dayhoff-tools
-```
-
-### Optional Dependencies
-
-You can install extra sets of dependencies using brackets. Available groups are:
-
-* `core`: Includes common data science and bioinformatics tools (`biopython`, `boto3`, `docker`, `fair-esm`, `h5py`, `questionary`).
-* `dev`: Includes development and testing tools (`black`, `pytest`, `pandas`, `numpy`, `torch`, etc.).
-* `all`: Includes all dependencies from both `core` and `dev`.
-
-**Examples:**
-
-```bash
-# Install with core dependencies
-pip install 'dayhoff-tools[core]'
-poetry add 'dayhoff-tools[core]'
-
-# Install with all dependencies
-pip install 'dayhoff-tools[all]'
-poetry add 'dayhoff-tools[all]'
-```