dayhoff-tools 1.0.2__py3-none-any.whl → 1.0.4__py3-none-any.whl

dayhoff_tools/cli/cloud_commands.py

@@ -585,7 +585,8 @@ def aws_interactive():
                 )
 
         elif choice == "Show status":
-            aws_status()
+            # Fix: Explicitly pass None for the profile parameter
+            aws_status(profile=None)
 
         elif choice == "Exit":
             print(f"To activate profile {current_profile} in your current shell, run:")

dayhoff_tools/cli/main.py

@@ -10,6 +10,7 @@ from dayhoff_tools.cli.utility_commands import (
     import_from_warehouse_typer,
     rebuild_devcontainer_file,
     test_github_actions_locally,
+    update_dayhoff_tools,
 )
 
 app = typer.Typer()
@@ -18,6 +19,7 @@ app = typer.Typer()
 app.command("clean")(delete_local_branch)
 app.command("gha")(test_github_actions_locally)
 app.command("rebuild")(rebuild_devcontainer_file)
+app.command("update")(update_dayhoff_tools)
 app.command("wadd")(add_to_warehouse_typer)
 app.command("wancestry")(get_ancestry)
 app.command("wimport")(import_from_warehouse_typer)

dayhoff_tools/cli/utility_commands.py

@@ -218,34 +218,6 @@ def build_and_upload_wheel(bump_part: str = "patch"):
         new_version = get_current_version_from_toml()
         print(f"New version: {new_version}")
 
-        # Update other pyproject files with the new version
-        for pyproject_file in [
-            "pyproject_gcp.toml",
-            "pyproject_mac.toml",
-        ]:
-            try:
-                with open(pyproject_file, "r") as f:
-                    content = f.read()
-                # Use the current_version read earlier for replacement
-                new_content = content.replace(
-                    f'version = "{current_version}"', f'version = "{new_version}"'
-                )
-                if new_content == content:
-                    print(
-                        f"Warning: Version string 'version = \"{current_version}\"' not found in {pyproject_file}. No update performed."
-                    )
-                else:
-                    with open(pyproject_file, "w") as f:
-                        f.write(new_content)
-                    print(
-                        f"Version bumped from {current_version} to {new_version} in {pyproject_file}"
-                    )
-            except FileNotFoundError:
-                print(f"Skipping {pyproject_file} - file not found")
-            except Exception as e:
-                print(f"Error updating {pyproject_file}: {e}")
-                return  # Stop if update fails
-
         # Disable keyring to avoid issues in containers/CI
         print("Disabling Poetry keyring...")
         subprocess.run(
@@ -279,3 +251,17 @@ def build_and_upload_wheel(bump_part: str = "patch"):
         print(f"Error during build/upload: {e}")
     except Exception as e:
         print(f"An unexpected error occurred: {e}")
+
+
+def update_dayhoff_tools():
+    """Update the dayhoff-tools package to the latest version using poetry."""
+    try:
+        print("Updating dayhoff-tools to the latest version...")
+        subprocess.run(["poetry", "update", "dayhoff-tools"], check=True)
+        print("Update complete!")
+    except subprocess.CalledProcessError as e:
+        print(f"Error occurred while updating: {e}")
+        sys.exit(1)
+    except FileNotFoundError:
+        print("Error: 'poetry' command not found. Make sure Poetry is installed.")
+        sys.exit(1)

{dayhoff_tools-1.0.2.dist-info → dayhoff_tools-1.0.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: dayhoff-tools
-Version: 1.0.2
+Version: 1.0.4
 Summary: Common tools for all the repos at Dayhoff Labs
 Author: Daniel Martin-Alarcon
 Author-email: dma@dayhofflabs.com

{dayhoff_tools-1.0.2.dist-info → dayhoff_tools-1.0.4.dist-info}/RECORD

@@ -2,10 +2,10 @@ dayhoff_tools/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 dayhoff_tools/chemistry/standardizer.py,sha256=uMn7VwHnx02nc404eO6fRuS4rsl4dvSPf2ElfZDXEpY,11188
 dayhoff_tools/chemistry/utils.py,sha256=jt-7JgF-GeeVC421acX-bobKbLU_X94KNOW24p_P-_M,2257
 dayhoff_tools/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-dayhoff_tools/cli/cloud_commands.py,sha256=XTHylqeZ-CLly_wl--7xQq9Ure_wJbzRZjUIzWhHKiI,20811
-dayhoff_tools/cli/main.py,sha256=DJwtU-D-UDzlj_SOZXzw61a2Jg7hvOQLfwBZCcV3eig,3534
+dayhoff_tools/cli/cloud_commands.py,sha256=rt8bcNo73zhCwNwcb8zTGmx2xxcGejhKEEl-d9HH2yM,20889
+dayhoff_tools/cli/main.py,sha256=E1-3rZ26LMgJVKBz6CdJwsHs9fJsSGa2_9tot3hNgz4,3604
 dayhoff_tools/cli/swarm_commands.py,sha256=5EyKj8yietvT5lfoz8Zx0iQvVaNgc3SJX1z2zQR6o6M,5614
-dayhoff_tools/cli/utility_commands.py,sha256=TQsPbim2RBvkx7I6ZfYxtbBJF2m1jZi6X5W0f8NUvVc,10314
+dayhoff_tools/cli/utility_commands.py,sha256=AsZMpvUNP2xjn5cZ9_BrBNHggfuy6PLwlHw1WP0d7o0,9602
 dayhoff_tools/deployment/base.py,sha256=u-AjbtHnFLoLt33dhYXHIpV-6jcieMEHHGBGN_U9Hm0,15626
 dayhoff_tools/deployment/deploy_aws.py,sha256=O0gQxHioSU_sNU8T8MD4wSOPvWc--V8eRRZzlRu035I,16446
 dayhoff_tools/deployment/deploy_gcp.py,sha256=DxBM4sUzwPK9RWLP9bSfr38n1HHl-TVrp4TsbdN8pUA,5795
@@ -25,7 +25,7 @@ dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
 dayhoff_tools/structure.py,sha256=ufN3gAodQxhnt7psK1VTQeu9rKERmo_PhoxIbB4QKMw,27660
 dayhoff_tools/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJqE4,16456
 dayhoff_tools/warehouse.py,sha256=TqV8nex1AluNaL4JuXH5zuu9P7qmE89lSo6f_oViy6U,14965
-dayhoff_tools-1.0.2.dist-info/METADATA,sha256=KNTdcWItPgKu6tQ-i4izsDL8Pfwbnyo40thpyPBmHtE,3949
-dayhoff_tools-1.0.2.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
-dayhoff_tools-1.0.2.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
-dayhoff_tools-1.0.2.dist-info/RECORD,,
+dayhoff_tools-1.0.4.dist-info/METADATA,sha256=6redvtvKbCTPTcoxILn4dPLj4HrkqJP_M8dYbQdxmaE,3949
+dayhoff_tools-1.0.4.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
+dayhoff_tools-1.0.4.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
+dayhoff_tools-1.0.4.dist-info/RECORD,,