dayhoff-tools 1.0.19__py3-none-any.whl → 1.0.20__py3-none-any.whl

dayhoff_tools/cli/utility_commands.py

@@ -419,15 +419,20 @@ def update_dayhoff_tools():
         print(f"Updating {pyproject_path} version constraint...")
         try:
             content = pyproject_path.read_text()
-            # Regex to find the dayhoff-tools dependency line, capturing name+extra
-            # Matches 'dayhoff-tools' or \"dayhoff-tools\", optional [extra], >= constraints etc.
+            # Adjusted Regex: Capture quoted package name (group 1),
+            # match operators, then match non-quote/comma chars for version.
             pattern = re.compile(
-                r"(^[\'\"](dayhoff-tools(?:\[[^\\\]]+\\])?)[\'\"]\s*)[\\>\\<\\=\\~\\^\\(\\)\\s,0-9\\.\\*\'\"]+",
+                # Capture group 1: Start, whitespace, quote, pkg name + optional extra, quote, whitespace
+                r"(^\\s*[\'\"](dayhoff-tools(?:\\\[[^\\\]]+\\])?)[\'\"]\\s*)" +
+                # Match version specifiers: operators followed by non-quote/comma chars
+                r"[><=~^]*[^\'\",]*",
                 re.MULTILINE,
             )
             new_constraint = f">= {locked_version}"
             new_content, num_replacements = pattern.subn(
-                rf"\1{new_constraint}", content
+                # Replace the whole match with group 1 + new constraint
+                rf"\\1{new_constraint}",
+                content,
             )
 
             if num_replacements > 0:
@@ -451,7 +456,8 @@ def update_dayhoff_tools():
 
         # Step 4: Sync environment based on updated lock file
         print("Syncing environment...")
-        sync_cmd = ["uv", "sync", "--no-install-project"]
+        # Adding --all-groups to ensure dev dependencies are synced too
+        sync_cmd = ["uv", "sync", "--all-groups", "--no-install-project"]
         print(f"Running command: {BLUE}{' '.join(sync_cmd)}{RESET}")
         subprocess.run(sync_cmd, check=True)
 

{dayhoff_tools-1.0.19.dist-info → dayhoff_tools-1.0.20.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: dayhoff-tools
-Version: 1.0.19
+Version: 1.0.20
 Summary: Common tools for all the repos at Dayhoff Labs
 Author: Daniel Martin-Alarcon
 Author-email: dma@dayhofflabs.com

{dayhoff_tools-1.0.19.dist-info → dayhoff_tools-1.0.20.dist-info}/RECORD

@@ -5,7 +5,7 @@ dayhoff_tools/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
 dayhoff_tools/cli/cloud_commands.py,sha256=KiYEuD3nSg8QPWBYfrhdze2La_CJe4iqK-8uOAHyS8U,35827
 dayhoff_tools/cli/main.py,sha256=yorL117hknzhNybt7CTz4oKXVuQRIDXPl7huIEWga-M,3666
 dayhoff_tools/cli/swarm_commands.py,sha256=5EyKj8yietvT5lfoz8Zx0iQvVaNgc3SJX1z2zQR6o6M,5614
-dayhoff_tools/cli/utility_commands.py,sha256=rbcrTsvdKivBEuVDhOFz3SoPJeLx9pCSj3XUmc6Q0lk,19044
+dayhoff_tools/cli/utility_commands.py,sha256=8FD5cwJGJAjc41ae7iBTRiK-GL-HmjnLZWfWsDFwrmw,19385
 dayhoff_tools/deployment/base.py,sha256=u-AjbtHnFLoLt33dhYXHIpV-6jcieMEHHGBGN_U9Hm0,15626
 dayhoff_tools/deployment/deploy_aws.py,sha256=O0gQxHioSU_sNU8T8MD4wSOPvWc--V8eRRZzlRu035I,16446
 dayhoff_tools/deployment/deploy_gcp.py,sha256=DxBM4sUzwPK9RWLP9bSfr38n1HHl-TVrp4TsbdN8pUA,5795
@@ -25,7 +25,7 @@ dayhoff_tools/sqlite.py,sha256=jV55ikF8VpTfeQqqlHSbY8OgfyfHj8zgHNpZjBLos_E,18672
 dayhoff_tools/structure.py,sha256=ufN3gAodQxhnt7psK1VTQeu9rKERmo_PhoxIbB4QKMw,27660
 dayhoff_tools/uniprot.py,sha256=BZYJQF63OtPcBBnQ7_P9gulxzJtqyorgyuDiPeOJqE4,16456
 dayhoff_tools/warehouse.py,sha256=TqV8nex1AluNaL4JuXH5zuu9P7qmE89lSo6f_oViy6U,14965
-dayhoff_tools-1.0.19.dist-info/METADATA,sha256=okG1WGmODVeiTDHJtFIiuoJCMT1aCdnKZMiK2yLAB9o,2214
-dayhoff_tools-1.0.19.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
-dayhoff_tools-1.0.19.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
-dayhoff_tools-1.0.19.dist-info/RECORD,,
+dayhoff_tools-1.0.20.dist-info/METADATA,sha256=ts2MKHRvyDI3PKxG1h62KtlFd4Kh-XPdhVAk6-irOm0,2214
+dayhoff_tools-1.0.20.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
+dayhoff_tools-1.0.20.dist-info/entry_points.txt,sha256=iAf4jteNqW3cJm6CO6czLxjW3vxYKsyGLZ8WGmxamSc,49
+dayhoff_tools-1.0.20.dist-info/RECORD,,