datamint 1.7.5__py3-none-any.whl → 1.7.6__py3-none-any.whl

datamint/apihandler/annotation_api_handler.py

@@ -16,6 +16,7 @@ import json
 from deprecated import deprecated
 from pathlib import Path
 from tqdm.auto import tqdm
+from medimgkit.nifti_utils import DEFAULT_NIFTI_MIME
 
 _LOGGER = logging.getLogger(__name__)
 _USER_LOGGER = logging.getLogger('user_logger')
@@ -280,7 +281,7 @@ class AnnotationAPIHandler(BaseAPIHandler):
                 with open(file_path, 'rb') as f:
                     filename = os.path.basename(file_path)
                     form = aiohttp.FormData()
-                    form.add_field('file', f, filename=filename, content_type='application/x-nifti')
+                    form.add_field('file', f, filename=filename, content_type=DEFAULT_NIFTI_MIME)
                     if model_id is not None:
                         form.add_field('model_id', model_id)  # Add model_id if provided
                     if worklist_id is not None:

datamint/apihandler/root_api_handler.py

@@ -7,9 +7,10 @@ import logging
 import asyncio
 import aiohttp
 from medimgkit.dicom_utils import anonymize_dicom, to_bytesio, is_dicom, is_dicom_report
-from medimgkit import dicom_utils
+from medimgkit import dicom_utils, standardize_mimetype
 from medimgkit.io_utils import is_io_object
 from medimgkit.format_detection import guess_typez, guess_extension, DEFAULT_MIME_TYPE
+from medimgkit.nifti_utils import DEFAULT_NIFTI_MIME, NIFTI_MIMES
 import pydicom
 from pathlib import Path
 from datetime import date
@@ -88,12 +89,17 @@ class RootAPIHandler(BaseAPIHandler):
         is_a_dicom_file = None
         if mimetype is None:
             mimetype_list, ext = guess_typez(file_path, use_magic=True)
-            mimetype = mimetype_list[-1]
-            if mimetype == 'application/gzip':
-                # Special case for gzipped NIfTI files
+            for mime in mimetype_list:
+                if mime in NIFTI_MIMES:
+                    mimetype = DEFAULT_NIFTI_MIME
+                    break
+            else:
                 if ext == '.nii.gz' or name.lower().endswith('nii.gz'):
-                    mimetype = 'image/x.nifti'
+                    mimetype = DEFAULT_NIFTI_MIME
+                else:
+                    mimetype = mimetype_list[-1] if mimetype_list else DEFAULT_MIME_TYPE
 
+        mimetype = standardize_mimetype(mimetype)
         filename = os.path.basename(name)
         _LOGGER.debug(f"File name '{filename}' mimetype: {mimetype}")
 

{datamint-1.7.5.dist-info → datamint-1.7.6.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: datamint
-Version: 1.7.5
+Version: 1.7.6
 Summary: A library for interacting with the Datamint API, designed for efficient data management, processing and Deep Learning workflows.
 Requires-Python: >=3.10
 Classifier: Programming Language :: Python :: 3
@@ -19,7 +19,7 @@ Requires-Dist: humanize (>=4.0.0,<5.0.0)
 Requires-Dist: lazy-loader (>=0.3.0)
 Requires-Dist: lightning
 Requires-Dist: matplotlib
-Requires-Dist: medimgkit (>=0.2.1)
+Requires-Dist: medimgkit (>=0.2.2)
 Requires-Dist: nest-asyncio (>=1.0.0,<2.0.0)
 Requires-Dist: nibabel (>=4.0.0)
 Requires-Dist: numpy

{datamint-1.7.5.dist-info → datamint-1.7.6.dist-info}/RECORD

@@ -1,10 +1,10 @@
 datamint/__init__.py,sha256=7rKCCsaa4RBRTIfuHB708rai1xwDHLtkFNFJGKYG5D4,757
-datamint/apihandler/annotation_api_handler.py,sha256=HnWiG2ebq08mdaazTXVbkuwvh6fmKIKt8uqAOf3Y1jU,57013
+datamint/apihandler/annotation_api_handler.py,sha256=ZJJD_Op8eDtGcpDZOS1DRjqyDUdD3UxvtuNJK9FaPOk,57063
 datamint/apihandler/api_handler.py,sha256=cdVSddrFCKlF_BJ81LO1aJ0OP49rssjpNEFzJ6Q7YyY,384
 datamint/apihandler/base_api_handler.py,sha256=HSMi8vN-xU0LLUEh3fgcuO7mXpMsX0wrA5nO9FVvrA4,12207
 datamint/apihandler/dto/annotation_dto.py,sha256=qId1RK1VO7dXrvGJ7dqJ31jBQB7Z8yy5x0tLSiMxTB4,7105
 datamint/apihandler/exp_api_handler.py,sha256=hFUgUgBc5rL7odK7gTW3MnrvMY1pVfJUpUdzRNobMQE,6226
-datamint/apihandler/root_api_handler.py,sha256=8VanqWbcLLkwQ0y2Z_a5Mqr5knplRCUSi5iRVQeHFzU,58901
+datamint/apihandler/root_api_handler.py,sha256=03eDLFYHzaQi-cv5aonKj7j0KowGK6sU5F_TCx3tRlU,59183
 datamint/client_cmd_tools/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 datamint/client_cmd_tools/datamint_config.py,sha256=md7dnWrbl10lPtXKbmD9yo6onLJsajeG8Vz0ZWH1v4M,8181
 datamint/client_cmd_tools/datamint_upload.py,sha256=890USkrtaH23mNjTRYVHWce2q9jSmkUNHIP_e8fnJRM,29502
@@ -22,7 +22,7 @@ datamint/logging.yaml,sha256=a5dsATpul7QHeUHB2TjABFjWaPXBMbO--dgn8GlRqwk,483
 datamint/utils/logging_utils.py,sha256=DvoA35ATYG3JTwfXEXYawDyKRfHeCrH0a9czfkmz8kM,1851
 datamint/utils/torchmetrics.py,sha256=lwU0nOtsSWfebyp7dvjlAggaqXtj5ohSEUXOg3L0hJE,2837
 datamint/utils/visualization.py,sha256=yaUVAOHar59VrGUjpAWv5eVvQSfztFG0eP9p5Vt3l-M,4470
-datamint-1.7.5.dist-info/METADATA,sha256=vWoLCzDqK33Lzb0DRTLLRAYpYJRX6xmv0p30Lo46Hwg,4100
-datamint-1.7.5.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
-datamint-1.7.5.dist-info/entry_points.txt,sha256=mn5H6jPjO-rY0W0CAZ6Z_KKWhMLvyVaSpoqk77jlTI4,145
-datamint-1.7.5.dist-info/RECORD,,
+datamint-1.7.6.dist-info/METADATA,sha256=xq4h5h5nYUIFRNpKleMaEkIrmuHbnLhIdJwm9ucwd8g,4100
+datamint-1.7.6.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
+datamint-1.7.6.dist-info/entry_points.txt,sha256=mn5H6jPjO-rY0W0CAZ6Z_KKWhMLvyVaSpoqk77jlTI4,145
+datamint-1.7.6.dist-info/RECORD,,