data-manipulation-utilities 0.2.8.dev714__py3-none-any.whl → 0.2.8.dev720__py3-none-any.whl

{data_manipulation_utilities-0.2.8.dev714.dist-info → data_manipulation_utilities-0.2.8.dev720.dist-info}/METADATA

@@ -1,7 +1,36 @@
-Metadata-Version: 2.4
-Name: data_manipulation_utilities
-Version: 0.2.8.dev714
+Metadata-Version: 2.3
+Name: data-manipulation-utilities
+Version: 0.2.8.dev720
 Summary: Project storing utilities needed to reduce boilerplate code when analyzing data
+Requires-Python: >=3.10,<3.13
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Provides-Extra: dev
+Provides-Extra: fit
+Provides-Extra: ml
+Requires-Dist: PyYAML
+Requires-Dist: awkward
+Requires-Dist: awkward-pandas
+Requires-Dist: dask[dataframe,distributed]
+Requires-Dist: hist[plot]
+Requires-Dist: joblib ; extra == "ml"
+Requires-Dist: logzero
+Requires-Dist: matplotlib
+Requires-Dist: mplhep
+Requires-Dist: numpy
+Requires-Dist: omegaconf
+Requires-Dist: optuna ; extra == "ml"
+Requires-Dist: pandas
+Requires-Dist: pytest ; extra == "dev"
+Requires-Dist: scikit-learn ; extra == "ml"
+Requires-Dist: scipy
+Requires-Dist: tensorflow
+Requires-Dist: toml
+Requires-Dist: tqdm
+Requires-Dist: uproot
+Requires-Dist: zfit (==0.26.0) ; extra == "fit"
 Description-Content-Type: text/markdown
 
 [TOC]
@@ -1793,3 +1822,4 @@ lxplus:
 ```
 
 and should be placed in `$HOME/.config/dmu/ssh/servers.yaml`
+

data_manipulation_utilities-0.2.8.dev720.dist-info/RECORD

@@ -0,0 +1,45 @@
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+data_manipulation_utilities-0.2.8.dev720.dist-info/entry_points.txt,sha256=M0C8_u9B_xSmyfemdPwdIBh9QuPIkjhEpG060Y5_Pjw,321
+data_manipulation_utilities-0.2.8.dev720.dist-info/RECORD,,

{data_manipulation_utilities-0.2.8.dev714.dist-info → data_manipulation_utilities-0.2.8.dev720.dist-info}/WHEEL

@@ -1,5 +1,4 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.9.0)
+Generator: poetry-core 2.1.3
 Root-Is-Purelib: true
 Tag: py3-none-any
-

data_manipulation_utilities-0.2.8.dev720.dist-info/entry_points.txt

@@ -0,0 +1,8 @@
+[console_scripts]
+check_truth=dmu_scripts.physics.check_truth:main
+compare_classifiers=dmu_scripts.ml.compare_classifiers:main
+compare_root_files=dmu_scripts.rfile.compare_root_files:main
+coned=dmu_scripts.ssh.coned:main
+print_trees=dmu_scripts.rfile.print_trees:main
+transform_text=dmu_scripts.text.transform_text:main
+

data_manipulation_utilities-0.2.8.dev714.data/scripts/publish

@@ -1,89 +0,0 @@
-#!/usr/bin/env bash
-
-# --------------------------
-display_help()
-{
-    echo "Script meant to:"
-    echo ""
-    echo "1. Check if version in pyproject.toml has been modified"
-    echo "2. If it has create new tag following version name"
-    echo "3. Push to remote "
-}
-# --------------------------
-get_opts()
-{
-    while getopts :hf: option; do 
-        case "${option}" in
-            h)  
-                display_help
-                exit 0
-                ;;  
-           \?)  echo "Invalid option: -${OPTARG}"
-                display_help
-                exit 1
-                ;;  
-            :)  echo "$0: Arguments needed"
-                display_help
-                exit 1
-                ;;  
-        esac
-    done
-}
-# --------------------------
-# Picks up version from pyproject.toml
-get_version()
-{
-    if [[ ! -f pyproject.toml ]];then
-        echo "Cannot find pyproject.toml"
-        exit 1
-    fi
-
-    VERSION_LINE=$(grep version pyproject.toml)
-
-    if [[ $? -ne 0 ]];then
-        ehco "Could not extract version from pyproject.toml"
-        exit 1
-    fi
-
-    if [[ "$VERSION_LINE" =~ .*([0-9]\.[0-9]\.[0-9]).* ]];then
-        VERSION=${BASH_REMATCH[1]}
-        echo "Using version: $VERSION"
-        return
-    fi
-
-    echo "Could not extract version from: $VERSION_LINE"
-    exit 1
-}
-# --------------------------
-create_tag()
-{
-    git tag -n | grep $VERSION
-
-    if [[ $? -eq 0 ]];then
-        echo "Version found among tags, not tagging"
-        return
-    fi
-
-    echo "Version $VERSION not found among tags, creating new tag"
-
-    git tag -a $VERSION
-}
-# --------------------------
-push_all()
-{
-    for REMOTE in $(git remote);do
-        echo "Pushing tags and commits to remote: $REMOTE"
-        git add pyproject.toml
-        git commit -m "Publication commit"
-
-        git pull    $REMOTE HEAD
-        git push -u $REMOTE HEAD
-        git push    $REMOTE --tags
-    done
-}
-# --------------------------
-get_opts "$@"
-
-get_version
-create_tag
-push_all

data_manipulation_utilities-0.2.8.dev714.dist-info/RECORD

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-dmu_data/text/transform.txt,sha256=EX760da6Vkf-_EPxnQlC5hGSkfFhJCCGCD19NU-1Qto,44
-dmu_data/text/transform_set.toml,sha256=Jeh7BTz82idqvbOQJtl9-ur56mZkzDn5WtvmIb48LoE,150
-dmu_data/text/transform_set.txt,sha256=1KivMoP9LxPn9955QrRmOzjEqduEjhTetQ9MXykO5LY,46
-dmu_data/text/transform_trf.txt,sha256=zxBRTgcSmX7RdqfmWF88W1YqbyNHa4Ccruf1MmnYv2A,74
-dmu_scripts/git/publish,sha256=-3K_Y2_4CfWCV50rPB8CRuhjxDu7xMGswinRwPovgLs,1976
-dmu_scripts/kerberos/check_expiration,sha256=PRJopcyFSeiAHdWpLEZp6mu_OKctUdIJj0HZfC0EWxg,308
-dmu_scripts/kerberos/convert_certificate,sha256=_4k4fmxpK-MbSLkkRYEPLQc9twfYBqOIiYZqL9yAXKE,445
-dmu_scripts/ml/compare_classifiers.py,sha256=XuHdcVyDLFGoKfvfv6YrgIavRpjpMrnBSqUnlliD7ew,2312
-dmu_scripts/physics/check_truth.py,sha256=b1P_Pa9ef6VcFtyY6Y9KS9Om9L-QrCBjDKp4dqca0PQ,3964
-dmu_scripts/rfile/compare_root_files.py,sha256=T8lDnQxsRNMr37x1Y7YvWD8ySHrJOWZki7ZQynxXX9Q,9540
-dmu_scripts/rfile/print_trees.py,sha256=Ze4Ccl_iUldl4eVEDVnYBoe4amqBT1fSBR1zN5WSztk,941
-dmu_scripts/ssh/coned.py,sha256=lhilYNHWRCGxC-jtyJ3LQ4oUgWW33B2l1tYCcyHHsR0,4858
-dmu_scripts/text/transform_text.py,sha256=9akj1LB0HAyopOvkLjNOJiptZw5XoOQLe17SlcrGMD0,1456
-data_manipulation_utilities-0.2.8.dev714.dist-info/METADATA,sha256=M5n-tPUt3o_0kY4viuQj6lbP4JQxWhpxkSnWCW29PFg,50263
-data_manipulation_utilities-0.2.8.dev714.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-data_manipulation_utilities-0.2.8.dev714.dist-info/entry_points.txt,sha256=-02cr8ibY6L_reX-_Owz2N7OUQyTAwydRIvLr9kKZK0,332
-data_manipulation_utilities-0.2.8.dev714.dist-info/top_level.txt,sha256=n_x5J6uWtSqy9mRImKtdA2V2NJNyU8Kn3u8DTOKJix0,25
-data_manipulation_utilities-0.2.8.dev714.dist-info/RECORD,,

data_manipulation_utilities-0.2.8.dev714.dist-info/entry_points.txt

@@ -1,7 +0,0 @@
-[console_scripts]
-check_truth = dmu_scripts.physics.check_truth:main
-compare_classifiers = dmu_scripts.ml.compare_classifiers:main
-compare_root_files = dmu_scripts.rfile.compare_root_files:main
-coned = dmu_scripts.ssh.coned:main
-print_trees = dmu_scripts.rfile.print_trees:main
-transform_text = dmu_scripts.text.transform_text:main

data_manipulation_utilities-0.2.8.dev714.dist-info/top_level.txt

@@ -1,3 +0,0 @@
-dmu
-dmu_data
-dmu_scripts

dmu_data/ml/tests/diagnostics_from_file.yaml

@@ -1,13 +0,0 @@
-output         : /tmp/tests/dmu/ml/cv_diagnostics/from_rdf
-  # Will assume that the target is already in the input dataframe
-  # and will use it, instead of evaluating models
-score_from_rdf : w 
-correlations:
-  # Variables with respect to which the correlations with the features will be measured
-  target :
-    name : z
-  methods:
-    - Pearson
-  figure:
-    title: Scores from file 
-    size : [10, 8]

dmu_data/ml/tests/diagnostics_from_model.yaml

@@ -1,10 +0,0 @@
-output      : /tmp/tests/dmu/ml/cv_diagnostics/from_model
-correlations:
-  # Variables with respect to which the correlations with the features will be measured
-  target    : 
-    name    : z
-  methods:
-    - Pearson
-  figure:
-    size  : [10, 8]
-    rotate: 90

dmu_data/ml/tests/diagnostics_multiple_methods.yaml

@@ -1,10 +0,0 @@
-output : /tmp/tests/dmu/ml/cv_diagnostics/multiple_methods
-correlations:
-  # Variables with respect to which the correlations with the features will be measured
-  target    : 
-    name : z
-  methods:
-    - Pearson
-    - Kendall-$\tau$ 
-  figure:
-    size : [10, 8]

dmu_data/ml/tests/diagnostics_overlay.yaml

@@ -1,33 +0,0 @@
-output         : /tmp/tests/dmu/ml/cv_diagnostics/overlay
-  # Will assume that the target is already in the input dataframe
-  # and will use it, instead of evaluating models
-score_from_rdf : w
-correlations:
-  # Variables with respect to which the correlations with the features will be measured
-  target :
-    name : z
-    overlay :
-      wp :
-        - 0.2
-        - 0.5
-        - 0.7
-        - 0.9
-      general:
-        size : [12, 10]
-      saving:
-        plt_dir : /tmp/tests/dmu/ml/cv_diagnostics/overlay
-      plots:
-        z :
-          binning    : [-4, 4, 10]
-          yscale     : 'linear'
-          labels     : ['$z$', 'Entries']
-          normalized : true
-          styling :          
-            linestyle: '-'
-  methods:
-    - Pearson
-    - Kendall-$\tau$ 
-  figure:
-    title     : Scores from file
-    size      : [12, 10]
-    xlabelsize: 30 

dmu_data/ml/tests/train_mva.yaml

@@ -1,60 +0,0 @@
-dataset:
-  define :
-    r : z + x
-  nan :
-    x : -3
-    y : -3
-training :
-    nfold    : 3
-    features :
-      - x
-      - y
-      - r
-    rdm_stat : 1
-    hyper    :
-      loss              : log_loss
-      max_features      : sqrt 
-      n_estimators      : 100
-      max_depth         : 5
-      min_samples_split : 2
-      subsample         : 0.8
-      learning_rate     : 0.1
-saving:
-    output : /tmp/tests/dmu/ml/train_mva
-plotting:
-    roc     :
-        min : [0.0, 0.0]
-        max : [1.2, 1.2]
-        annotate:
-          sig_eff : [0.5, 0.6, 0.7, 0.8, 0.9]
-          form : '{:.2f}'
-          color: 'green'
-          xoff : -15
-          yoff : -15
-          size :  10
-    correlation:
-      title      : 'Correlation matrix'
-      size       : [10, 10]
-      mask_value : 0
-    features:
-        plots:
-          r :
-            binning : [-6, 6, 100]
-            yscale  : 'linear'
-            labels  : ['$r$', '']
-          w :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$w$', '']
-          x :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$x$', '']
-          y :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$y$', '']
-          z :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$z$', '']

dmu_data/ml/tests/train_mva_def.yaml

@@ -1,75 +0,0 @@
-# This config file is used for testing training and evaluation
-# when there is a variable that is defined in different ways
-# for the `sig` and `bkg` samples
-
-dataset:
-  samples:
-    sig :
-      definitions:
-        n : x + y
-    bkg :
-      definitions:
-        n : x - y
-  define :
-    r : z + x
-  nan :
-    n : -3
-    y : -3
-training :
-    nfold    : 3
-    features :
-      - n
-      - y
-      - r
-    rdm_stat : 1
-    hyper    :
-      loss              : log_loss
-      max_features      : sqrt
-      n_estimators      : 100
-      max_depth         : 5
-      min_samples_split : 2
-      subsample         : 0.8
-      learning_rate     : 0.1
-saving:
-    output : /tmp/tests/dmu/ml/train_mva
-plotting:
-    roc     :
-        min : [0.0, 0.0]
-        max : [1.2, 1.2]
-        annotate:
-          sig_eff : [0.5, 0.6, 0.7, 0.8, 0.9]
-          form : '{:.2f}'
-          color: 'green'
-          xoff : -15
-          yoff : -15
-          size :  10
-    correlation:
-      title      : 'Correlation matrix'
-      size       : [10, 10]
-      mask_value : 0
-    features:
-        plots:
-          r :
-            binning : [-6, 6, 100]
-            yscale  : 'linear'
-            labels  : ['$r$', '']
-          n :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$n$', '']
-          w :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$w$', '']
-          x :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$x$', '']
-          y :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$y$', '']
-          z :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$z$', '']

dmu_data/ml/tests/train_mva_with_diagnostics.yaml

@@ -1,87 +0,0 @@
-dataset:
-  define :
-    r : z + x
-  nan :
-    x : -3
-    y : -3
-training :
-    nfold    : 3
-    features : [x, y, r]
-    rdm_stat : 1
-    hyper    :
-      loss              : log_loss
-      n_estimators      : 100
-      max_depth         : 3
-      learning_rate     : 0.1
-      min_samples_split : 2
-saving:
-    output : /tmp/tests/dmu/ml/train_mva
-plotting:
-    roc     :
-        min : [0.0, 0.0]
-        max : [1.2, 1.2]
-        annotate:
-          sig_eff : [0.5, 0.6, 0.7, 0.8, 0.9]
-          form : '{:.2f}'
-          color: 'green'
-          xoff : -15
-          yoff : -15
-          size :  10
-    correlation:
-      title      : 'Correlation matrix'
-      size       : [10, 10]
-      mask_value : 0
-    val_dir : '/tmp/tests/dmu/ml/train_mva'
-    features:
-        saving:
-            plt_dir : '/tmp/tests/dmu/ml/train_mva/features'
-        plots:
-          r :
-            binning : [-6, 6, 100]
-            yscale  : 'linear'
-            labels  : ['$r$', '']
-          w :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$w$', '']
-          x :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$x$', '']
-          y :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$y$', '']
-          z :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$z$', '']
-diagnostics:
-  output         : /tmp/tests/dmu/ml/train_mva/diagnostics
-  correlations:
-    target :
-      name : z
-      overlay :
-        wp :
-          - 0.2
-          - 0.6
-          - 0.8
-          - 0.9
-        general:
-          size : [20, 10]
-        saving:
-          plt_dir : /tmp/tests/dmu/ml/train_mva/diagnostics
-        plots:
-          z :
-            binning    : [-4, +4, 30]
-            yscale     : 'linear'
-            labels     : ['z', 'Entries']
-            normalized : true
-            styling :
-              linestyle: '-'
-    methods:
-      - Pearson
-      - Kendall-$\tau$
-    figure:
-      title: Training diagnostics
-      size : [10, 8]

dmu_data/ml/tests/train_mva_with_preffix.yaml

@@ -1,58 +0,0 @@
-dataset:
-  define :
-    r : z + preffix.x.suffix
-  nan :
-    preffix.x.suffix : -3
-    y : -3
-training :
-    nfold    : 2
-    features :
-      - preffix.x.suffix
-      - y
-      - r
-    rdm_stat : 1
-    hyper    :
-      loss              : log_loss
-      n_estimators      : 100
-      max_depth         : 3
-      learning_rate     : 0.1
-      min_samples_split : 2
-saving:
-    output : /tmp/tests/dmu/ml/train_mva
-plotting:
-    roc     :
-        min : [0.0, 0.0]
-        max : [1.2, 1.2]
-        annotate:
-          sig_eff : [0.5, 0.6, 0.7, 0.8, 0.9]
-          form : '{:.2f}'
-          color: 'green'
-          xoff : -15
-          yoff : -15
-          size :  10
-    correlation:
-      title      : 'Correlation matrix'
-      size       : [10, 10]
-      mask_value : 0
-    features:
-        plots:
-          r :
-            binning : [-6, 6, 100]
-            yscale  : 'linear'
-            labels  : ['$r$', '']
-          w :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$w$', '']
-          preffix.x.suffix :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$x$', '']
-          y :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$y$', '']
-          z :
-            binning : [-4, 4, 100]
-            yscale  : 'linear'
-            labels  : ['$z$', '']