dask-array 0.1.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- dask_array/__init__.py +228 -0
- dask_array/_backends.py +76 -0
- dask_array/_backends_array.py +99 -0
- dask_array/_blockwise.py +1410 -0
- dask_array/_broadcast.py +272 -0
- dask_array/_chunk.py +445 -0
- dask_array/_chunk_types.py +54 -0
- dask_array/_collection.py +1644 -0
- dask_array/_concatenate.py +331 -0
- dask_array/_core_utils.py +1365 -0
- dask_array/_dispatch.py +141 -0
- dask_array/_einsum.py +277 -0
- dask_array/_expr.py +544 -0
- dask_array/_expr_flow.py +586 -0
- dask_array/_gufunc.py +805 -0
- dask_array/_histogram.py +617 -0
- dask_array/_map_blocks.py +652 -0
- dask_array/_new_collection.py +10 -0
- dask_array/_numpy_compat.py +135 -0
- dask_array/_overlap.py +1159 -0
- dask_array/_rechunk.py +1050 -0
- dask_array/_reshape.py +710 -0
- dask_array/_routines.py +102 -0
- dask_array/_shuffle.py +448 -0
- dask_array/_stack.py +264 -0
- dask_array/_svg.py +291 -0
- dask_array/_templates.py +29 -0
- dask_array/_test_utils.py +257 -0
- dask_array/_ufunc.py +385 -0
- dask_array/_utils.py +349 -0
- dask_array/_visualize.py +223 -0
- dask_array/_xarray.py +337 -0
- dask_array/core/__init__.py +34 -0
- dask_array/core/_blockwise_funcs.py +312 -0
- dask_array/core/_conversion.py +422 -0
- dask_array/core/_from_graph.py +97 -0
- dask_array/creation/__init__.py +71 -0
- dask_array/creation/_arange.py +121 -0
- dask_array/creation/_diag.py +116 -0
- dask_array/creation/_diagonal.py +241 -0
- dask_array/creation/_eye.py +103 -0
- dask_array/creation/_linspace.py +102 -0
- dask_array/creation/_mesh.py +134 -0
- dask_array/creation/_ones_zeros.py +454 -0
- dask_array/creation/_pad.py +270 -0
- dask_array/creation/_repeat.py +55 -0
- dask_array/creation/_tile.py +36 -0
- dask_array/creation/_tri.py +28 -0
- dask_array/creation/_utils.py +296 -0
- dask_array/fft.py +320 -0
- dask_array/io/__init__.py +39 -0
- dask_array/io/_base.py +10 -0
- dask_array/io/_from_array.py +257 -0
- dask_array/io/_from_delayed.py +95 -0
- dask_array/io/_from_graph.py +54 -0
- dask_array/io/_from_npy_stack.py +67 -0
- dask_array/io/_store.py +336 -0
- dask_array/io/_tiledb.py +159 -0
- dask_array/io/_to_npy_stack.py +65 -0
- dask_array/io/_zarr.py +449 -0
- dask_array/linalg/__init__.py +39 -0
- dask_array/linalg/_cholesky.py +234 -0
- dask_array/linalg/_lu.py +300 -0
- dask_array/linalg/_norm.py +94 -0
- dask_array/linalg/_qr.py +601 -0
- dask_array/linalg/_solve.py +349 -0
- dask_array/linalg/_svd.py +394 -0
- dask_array/linalg/_tensordot.py +334 -0
- dask_array/linalg/_utils.py +74 -0
- dask_array/manipulation/__init__.py +45 -0
- dask_array/manipulation/_expand.py +321 -0
- dask_array/manipulation/_flip.py +92 -0
- dask_array/manipulation/_roll.py +78 -0
- dask_array/manipulation/_transpose.py +309 -0
- dask_array/random/__init__.py +125 -0
- dask_array/random/_choice.py +181 -0
- dask_array/random/_expr.py +256 -0
- dask_array/random/_generator.py +441 -0
- dask_array/random/_random_state.py +259 -0
- dask_array/random/_utils.py +84 -0
- dask_array/reductions/__init__.py +84 -0
- dask_array/reductions/_arg_reduction.py +130 -0
- dask_array/reductions/_common.py +1082 -0
- dask_array/reductions/_cumulative.py +522 -0
- dask_array/reductions/_percentile.py +261 -0
- dask_array/reductions/_reduction.py +725 -0
- dask_array/reductions/_trace.py +56 -0
- dask_array/routines/__init__.py +133 -0
- dask_array/routines/_apply.py +84 -0
- dask_array/routines/_bincount.py +112 -0
- dask_array/routines/_broadcast.py +111 -0
- dask_array/routines/_coarsen.py +115 -0
- dask_array/routines/_diff.py +79 -0
- dask_array/routines/_gradient.py +158 -0
- dask_array/routines/_indexing.py +65 -0
- dask_array/routines/_insert_delete.py +132 -0
- dask_array/routines/_misc.py +122 -0
- dask_array/routines/_nonzero.py +72 -0
- dask_array/routines/_search.py +123 -0
- dask_array/routines/_select.py +113 -0
- dask_array/routines/_statistics.py +171 -0
- dask_array/routines/_topk.py +82 -0
- dask_array/routines/_triangular.py +74 -0
- dask_array/routines/_unique.py +232 -0
- dask_array/routines/_where.py +62 -0
- dask_array/slicing/__init__.py +67 -0
- dask_array/slicing/_basic.py +550 -0
- dask_array/slicing/_blocks.py +138 -0
- dask_array/slicing/_bool_index.py +145 -0
- dask_array/slicing/_setitem.py +329 -0
- dask_array/slicing/_squeeze.py +101 -0
- dask_array/slicing/_utils.py +1133 -0
- dask_array/slicing/_vindex.py +282 -0
- dask_array/stacking/__init__.py +15 -0
- dask_array/stacking/_block.py +83 -0
- dask_array/stacking/_simple.py +58 -0
- dask_array/templates/array.html.j2 +48 -0
- dask_array/tests/__init__.py +0 -0
- dask_array/tests/conftest.py +22 -0
- dask_array/tests/test_api.py +40 -0
- dask_array/tests/test_binary_op_chunks.py +107 -0
- dask_array/tests/test_coarse_slice_through_blockwise.py +362 -0
- dask_array/tests/test_collection.py +799 -0
- dask_array/tests/test_creation.py +1102 -0
- dask_array/tests/test_expr_flow.py +143 -0
- dask_array/tests/test_linalg.py +1130 -0
- dask_array/tests/test_map_blocks_multi_output.py +104 -0
- dask_array/tests/test_rechunk_pushdown.py +214 -0
- dask_array/tests/test_reductions.py +1091 -0
- dask_array/tests/test_routines.py +2853 -0
- dask_array/tests/test_shuffle_chunks.py +67 -0
- dask_array/tests/test_slice_pushdown.py +968 -0
- dask_array/tests/test_slice_through_blockwise.py +678 -0
- dask_array/tests/test_slice_through_overlap.py +366 -0
- dask_array/tests/test_slice_through_reshape.py +272 -0
- dask_array/tests/test_slicing.py +839 -0
- dask_array/tests/test_transpose_slice_pushdown.py +208 -0
- dask_array/tests/test_visualize.py +94 -0
- dask_array/tests/test_xarray.py +193 -0
- dask_array-0.1.0.dist-info/METADATA +48 -0
- dask_array-0.1.0.dist-info/RECORD +144 -0
- dask_array-0.1.0.dist-info/WHEEL +4 -0
- dask_array-0.1.0.dist-info/entry_points.txt +2 -0
- dask_array-0.1.0.dist-info/licenses/LICENSE +29 -0
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from __future__ import annotations
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import pickle
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import pytest
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from dask._task_spec import Alias
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from dask.base import collections_to_expr
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pytest.importorskip("numpy")
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import numpy as np
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import pytest
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from tlz import concat
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import dask
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import dask_array as da
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from dask_array._core_utils import normalize_chunks
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from dask_array._numpy_compat import NUMPY_GE_210, AxisError
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from dask_array._test_utils import assert_eq, same_keys
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@pytest.mark.parametrize(
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"backend",
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["numpy", pytest.param("cupy", marks=pytest.mark.gpu)],
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)
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@pytest.mark.parametrize(
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"funcname",
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[
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"empty_like",
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"empty",
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"ones_like",
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"ones",
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"zeros_like",
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"zeros",
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"full_like",
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"full",
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],
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)
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@pytest.mark.parametrize("cast_shape", [tuple, list, np.asarray])
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@pytest.mark.parametrize("cast_chunks", [tuple, list, np.asarray])
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@pytest.mark.parametrize("shape, chunks", [((10, 10), (4, 4))])
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@pytest.mark.parametrize("name", [None, "my-name"])
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@pytest.mark.parametrize("order", ["C", "F"])
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@pytest.mark.parametrize("dtype", ["i4"])
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def test_arr_like(funcname, shape, cast_shape, dtype, cast_chunks, chunks, name, order, backend):
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backend_lib = pytest.importorskip(backend)
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with dask.config.set({"array.backend": backend}):
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np_func = getattr(backend_lib, funcname)
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da_func = getattr(da, funcname)
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shape = cast_shape(shape)
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chunks = cast_chunks(chunks)
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if "full" in funcname:
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old_np_func = np_func
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old_da_func = da_func
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np_func = lambda *a, **k: old_np_func(*a, fill_value=5, **k)
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da_func = lambda *a, **k: old_da_func(*a, fill_value=5, **k)
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dtype = np.dtype(dtype)
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if "like" in funcname:
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a = backend_lib.random.randint(0, 10, shape).astype(dtype)
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np_r = np_func(a, order=order)
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da_r = da_func(a, order=order, chunks=chunks, name=name)
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else:
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np_r = np_func(shape, order=order, dtype=dtype)
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da_r = da_func(shape, order=order, dtype=dtype, chunks=chunks, name=name)
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assert np_r.shape == da_r.shape
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assert np_r.dtype == da_r.dtype
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# Make sure we are using the desired backend
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assert isinstance(da_r._meta, backend_lib.ndarray)
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assert isinstance(da_r.compute(), backend_lib.ndarray)
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assert_eq(np_r, da_r)
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assert funcname.split("_")[0] in da_r.name
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else:
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assert da_r.name == name
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if "order" == "F": # FIXME: this is clearly a bug! # noqa: PLR0133
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assert np.isfortran(da_r.compute())
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("empty_like", {}),
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("ones_like", {}),
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("full_like", {"fill_value": 5}),
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],
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@pytest.mark.parametrize(
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[
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((10, 10), (4, 4), None),
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((10, 10), (4, 4), (20, 3)),
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((10, 10), (4), (20)),
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((10, 10, 10), (4, 2), (5, 5)),
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((2, 3, 5, 7), None, (3, 5, 7)),
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((2, 3, 5, 7), (2, 5, 3), (3, 5, 7)),
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((2, 3, 5, 7), (2, 5, 3, "auto", 3), (11,) + (2, 3, 5, 7)),
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((2, 3, 5, 7), "auto", (3, 5, 7)),
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],
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@pytest.mark.parametrize("dtype", ["i4"])
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def test_arr_like_shape(funcname, kwargs, shape, dtype, chunks, out_shape):
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np_func = getattr(np, funcname)
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da_func = getattr(da, funcname)
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a = np.random.randint(0, 10, shape).astype(dtype)
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np_r = np_func(a, shape=out_shape, **kwargs)
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da_r = da_func(a, chunks=chunks, shape=out_shape, **kwargs)
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assert np_r.shape == da_r.shape
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assert np_r.dtype == da_r.dtype
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if "empty" not in funcname:
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assert_eq(np_r, da_r)
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@pytest.mark.skip(reason="dask scalar inputs not supported")
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@pytest.mark.parametrize("endpoint", [True, False])
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def test_linspace(endpoint):
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darr = da.linspace(6, 49, endpoint=endpoint, chunks=5)
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nparr = np.linspace(6, 49, endpoint=endpoint)
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assert_eq(darr, nparr)
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darr = da.linspace(1.4, 4.9, endpoint=endpoint, chunks=5, num=13)
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nparr = np.linspace(1.4, 4.9, endpoint=endpoint, num=13)
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assert_eq(darr, nparr)
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darr = da.linspace(6, 49, endpoint=endpoint, chunks=5, dtype=float)
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nparr = np.linspace(6, 49, endpoint=endpoint, dtype=float)
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assert_eq(darr, nparr)
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darr, dstep = da.linspace(6, 49, endpoint=endpoint, chunks=5, retstep=True)
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nparr, npstep = np.linspace(6, 49, endpoint=endpoint, retstep=True)
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assert np.allclose(dstep, npstep)
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assert_eq(darr, nparr)
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darr = da.linspace(1.4, 4.9, endpoint=endpoint, chunks=5, num=13, dtype=int)
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nparr = np.linspace(1.4, 4.9, num=13, endpoint=endpoint, dtype=int)
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assert_eq(darr, nparr)
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assert sorted(da.linspace(1.4, 4.9, endpoint=endpoint, chunks=5, num=13).dask) == sorted(
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da.linspace(1.4, 4.9, endpoint=endpoint, chunks=5, num=13).dask
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)
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assert sorted(da.linspace(6, 49, endpoint=endpoint, chunks=5, dtype=float).dask) == sorted(
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x = da.array([0.2, 6.4, 3.0, 1.6])
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nparr = np.linspace(0, 2, 8, endpoint=endpoint)
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darr = da.linspace(da.argmin(x), da.argmax(x) + 1, 8, endpoint=endpoint)
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assert_eq(darr, nparr)
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nparr = np.linspace(0, 0, 0, endpoint=endpoint)
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darr = da.linspace(0, 0, 0, endpoint=endpoint)
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assert_eq(darr, nparr)
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nparr = np.linspace(1, 1, 0, endpoint=endpoint)
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darr = da.linspace(1, 1, 0, endpoint=endpoint)
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assert_eq(darr, nparr)
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nparr = np.linspace(1, 5, 0, endpoint=endpoint)
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darr = da.linspace(1, 5, 0, endpoint=endpoint)
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assert_eq(darr, nparr)
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nparr = np.linspace(0, 0, 1, endpoint=endpoint)
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darr = da.linspace(0, 0, 1, endpoint=endpoint)
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assert_eq(darr, nparr)
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nparr = np.linspace(1, 1, 1, endpoint=endpoint)
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darr = da.linspace(1, 1, 1, endpoint=endpoint)
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assert_eq(darr, nparr)
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nparr = np.linspace(1, 5, 1, endpoint=endpoint)
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darr = da.linspace(1, 5, 1, endpoint=endpoint)
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assert_eq(darr, nparr)
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def test_arange():
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darr = da.arange(77, chunks=13)
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nparr = np.arange(77)
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|
+
assert_eq(darr, nparr)
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194
|
+
|
|
195
|
+
darr = da.arange(2, 13, chunks=5)
|
|
196
|
+
nparr = np.arange(2, 13)
|
|
197
|
+
assert_eq(darr, nparr)
|
|
198
|
+
|
|
199
|
+
darr = da.arange(4, 21, 9, chunks=13)
|
|
200
|
+
nparr = np.arange(4, 21, 9)
|
|
201
|
+
assert_eq(darr, nparr)
|
|
202
|
+
|
|
203
|
+
# negative steps
|
|
204
|
+
darr = da.arange(53, 5, -3, chunks=5)
|
|
205
|
+
nparr = np.arange(53, 5, -3)
|
|
206
|
+
assert_eq(darr, nparr)
|
|
207
|
+
|
|
208
|
+
darr = da.arange(77, chunks=13, dtype=float)
|
|
209
|
+
nparr = np.arange(77, dtype=float)
|
|
210
|
+
assert_eq(darr, nparr)
|
|
211
|
+
|
|
212
|
+
darr = da.arange(2, 13, chunks=5, dtype=int)
|
|
213
|
+
nparr = np.arange(2, 13, dtype=int)
|
|
214
|
+
assert_eq(darr, nparr)
|
|
215
|
+
assert sorted(da.arange(2, 13, chunks=5).dask) == sorted(da.arange(2, 13, chunks=5).dask)
|
|
216
|
+
assert sorted(da.arange(77, chunks=13, dtype=float).dask) == sorted(da.arange(77, chunks=13, dtype=float).dask)
|
|
217
|
+
|
|
218
|
+
# 0 size output
|
|
219
|
+
darr = da.arange(0, 1, -0.5, chunks=20)
|
|
220
|
+
nparr = np.arange(0, 1, -0.5)
|
|
221
|
+
assert_eq(darr, nparr)
|
|
222
|
+
|
|
223
|
+
darr = da.arange(0, -1, 0.5, chunks=20)
|
|
224
|
+
nparr = np.arange(0, -1, 0.5)
|
|
225
|
+
assert_eq(darr, nparr)
|
|
226
|
+
|
|
227
|
+
# stop and/or step as kwargs
|
|
228
|
+
darr = da.arange(stop=10)
|
|
229
|
+
nparr = np.arange(stop=10)
|
|
230
|
+
assert_eq(darr, nparr)
|
|
231
|
+
|
|
232
|
+
darr = da.arange(10, step=2)
|
|
233
|
+
nparr = np.arange(10, step=2)
|
|
234
|
+
assert_eq(darr, nparr)
|
|
235
|
+
|
|
236
|
+
darr = da.arange(stop=10, step=2)
|
|
237
|
+
nparr = np.arange(stop=10, step=2)
|
|
238
|
+
assert_eq(darr, nparr)
|
|
239
|
+
|
|
240
|
+
darr = da.arange(3, stop=10, step=2)
|
|
241
|
+
nparr = np.arange(3, stop=10, step=2)
|
|
242
|
+
assert_eq(darr, nparr)
|
|
243
|
+
|
|
244
|
+
with pytest.raises(TypeError, match="requires stop"):
|
|
245
|
+
da.arange()
|
|
246
|
+
|
|
247
|
+
# Unexpected or missing kwargs
|
|
248
|
+
with pytest.raises(TypeError, match="whatsthis"):
|
|
249
|
+
da.arange(10, chunks=-1, whatsthis=1)
|
|
250
|
+
|
|
251
|
+
assert da.arange(10).chunks == ((10,),)
|
|
252
|
+
|
|
253
|
+
|
|
254
|
+
arange_dtypes = [
|
|
255
|
+
np.uint8,
|
|
256
|
+
np.uint64,
|
|
257
|
+
np.int8,
|
|
258
|
+
np.int64,
|
|
259
|
+
np.float32,
|
|
260
|
+
np.float64,
|
|
261
|
+
]
|
|
262
|
+
|
|
263
|
+
|
|
264
|
+
# FIXME hypothesis would be much better suited for this
|
|
265
|
+
@pytest.mark.parametrize("start_type", arange_dtypes + [int, float])
|
|
266
|
+
@pytest.mark.parametrize("stop_type", arange_dtypes + [int, float])
|
|
267
|
+
@pytest.mark.parametrize("step_type", arange_dtypes + [int, float])
|
|
268
|
+
def test_arange_dtype_infer(start_type, stop_type, step_type):
|
|
269
|
+
start = start_type(3)
|
|
270
|
+
stop = stop_type(13)
|
|
271
|
+
step = step_type(2)
|
|
272
|
+
a_np = np.arange(start, stop, step)
|
|
273
|
+
a_da = da.arange(start, stop, step)
|
|
274
|
+
assert_eq(a_np, a_da)
|
|
275
|
+
|
|
276
|
+
|
|
277
|
+
@pytest.mark.parametrize("dtype", arange_dtypes)
|
|
278
|
+
def test_arange_dtype_force(dtype):
|
|
279
|
+
assert da.arange(10, dtype=dtype).dtype == dtype
|
|
280
|
+
assert da.arange(np.float32(10), dtype=dtype).dtype == dtype
|
|
281
|
+
assert da.arange(np.int64(10), dtype=dtype).dtype == dtype
|
|
282
|
+
|
|
283
|
+
|
|
284
|
+
@pytest.mark.skipif(np.array(0).dtype == np.int32, reason="64-bit platforms only")
|
|
285
|
+
@pytest.mark.parametrize(
|
|
286
|
+
"start,stop,step",
|
|
287
|
+
[
|
|
288
|
+
(2**63 - 10_000, 2**63 - 1, 1),
|
|
289
|
+
(2**63 - 1, 2**63 - 10_000, -1),
|
|
290
|
+
(0, 2**63 - 1, 2**63 - 10_000),
|
|
291
|
+
(0.0, 2**63 - 1, 2**63 - 10_000),
|
|
292
|
+
(0.0, -9_131_138_316_486_228_481, -92_233_720_368_547_759),
|
|
293
|
+
(-72_057_594_037_927_945, -72_057_594_037_927_938, 1.0),
|
|
294
|
+
(-72_057_594_037_927_945, -72_057_594_037_927_938, 1.5),
|
|
295
|
+
],
|
|
296
|
+
)
|
|
297
|
+
@pytest.mark.parametrize("chunks", ["auto", 1])
|
|
298
|
+
def test_arange_very_large_args(start, stop, step, chunks):
|
|
299
|
+
"""Test args that are very close to 2**63
|
|
300
|
+
https://github.com/dask/dask/issues/11706
|
|
301
|
+
"""
|
|
302
|
+
a_np = np.arange(start, stop, step)
|
|
303
|
+
a_da = da.arange(start, stop, step, chunks=chunks)
|
|
304
|
+
assert_eq(a_np, a_da)
|
|
305
|
+
|
|
306
|
+
|
|
307
|
+
@pytest.mark.xfail(
|
|
308
|
+
reason="Casting floats to ints is not supported since edge behavior is not specified or guaranteed by NumPy."
|
|
309
|
+
)
|
|
310
|
+
def test_arange_cast_float_int_step():
|
|
311
|
+
darr = da.arange(3.3, -9.1, -0.25, chunks=3, dtype="i8")
|
|
312
|
+
nparr = np.arange(3.3, -9.1, -0.25, dtype="i8")
|
|
313
|
+
assert_eq(darr, nparr)
|
|
314
|
+
|
|
315
|
+
|
|
316
|
+
def test_arange_float_step():
|
|
317
|
+
darr = da.arange(2.0, 13.0, 0.3, chunks=4)
|
|
318
|
+
nparr = np.arange(2.0, 13.0, 0.3)
|
|
319
|
+
assert_eq(darr, nparr)
|
|
320
|
+
|
|
321
|
+
darr = da.arange(7.7, 1.5, -0.8, chunks=3)
|
|
322
|
+
nparr = np.arange(7.7, 1.5, -0.8)
|
|
323
|
+
assert_eq(darr, nparr)
|
|
324
|
+
|
|
325
|
+
darr = da.arange(0, 1, 0.01, chunks=20)
|
|
326
|
+
nparr = np.arange(0, 1, 0.01)
|
|
327
|
+
assert_eq(darr, nparr)
|
|
328
|
+
|
|
329
|
+
darr = da.arange(0, 1, 0.03, chunks=20)
|
|
330
|
+
nparr = np.arange(0, 1, 0.03)
|
|
331
|
+
assert_eq(darr, nparr)
|
|
332
|
+
|
|
333
|
+
|
|
334
|
+
def test_indices_wrong_chunks():
|
|
335
|
+
with pytest.raises(ValueError):
|
|
336
|
+
da.indices((1,), chunks=tuple())
|
|
337
|
+
|
|
338
|
+
|
|
339
|
+
def test_indices_dimensions_chunks():
|
|
340
|
+
chunks = ((1, 4, 2, 3), (5, 5))
|
|
341
|
+
darr = da.indices((10, 10), chunks=chunks)
|
|
342
|
+
assert darr.chunks == ((1, 1),) + chunks
|
|
343
|
+
|
|
344
|
+
with dask.config.set({"array.chunk-size": "50 MiB"}):
|
|
345
|
+
shape = (10000, 10000)
|
|
346
|
+
expected = normalize_chunks("auto", shape=shape, dtype=int)
|
|
347
|
+
result = da.indices(shape, chunks="auto")
|
|
348
|
+
# indices prepends a dimension
|
|
349
|
+
actual = result.chunks[1:]
|
|
350
|
+
assert expected == actual
|
|
351
|
+
|
|
352
|
+
|
|
353
|
+
def test_empty_indices():
|
|
354
|
+
darr = da.indices(tuple(), chunks=tuple())
|
|
355
|
+
nparr = np.indices(tuple())
|
|
356
|
+
assert darr.shape == nparr.shape
|
|
357
|
+
assert darr.dtype == nparr.dtype
|
|
358
|
+
assert_eq(darr, nparr)
|
|
359
|
+
|
|
360
|
+
darr = da.indices(tuple(), float, chunks=tuple())
|
|
361
|
+
nparr = np.indices(tuple(), float)
|
|
362
|
+
assert darr.shape == nparr.shape
|
|
363
|
+
assert darr.dtype == nparr.dtype
|
|
364
|
+
assert_eq(darr, nparr)
|
|
365
|
+
|
|
366
|
+
darr = da.indices((0,), float, chunks=(1,))
|
|
367
|
+
nparr = np.indices((0,), float)
|
|
368
|
+
assert darr.shape == nparr.shape
|
|
369
|
+
assert darr.dtype == nparr.dtype
|
|
370
|
+
assert_eq(darr, nparr)
|
|
371
|
+
|
|
372
|
+
darr = da.indices((0, 1, 2), float, chunks=(1, 1, 2))
|
|
373
|
+
nparr = np.indices((0, 1, 2), float)
|
|
374
|
+
assert darr.shape == nparr.shape
|
|
375
|
+
assert darr.dtype == nparr.dtype
|
|
376
|
+
assert_eq(darr, nparr)
|
|
377
|
+
|
|
378
|
+
|
|
379
|
+
def test_indices():
|
|
380
|
+
darr = da.indices((1,), chunks=(1,))
|
|
381
|
+
nparr = np.indices((1,))
|
|
382
|
+
assert_eq(darr, nparr)
|
|
383
|
+
|
|
384
|
+
darr = da.indices((1,), float, chunks=(1,))
|
|
385
|
+
nparr = np.indices((1,), float)
|
|
386
|
+
assert_eq(darr, nparr)
|
|
387
|
+
|
|
388
|
+
darr = da.indices((2, 1), chunks=(2, 1))
|
|
389
|
+
nparr = np.indices((2, 1))
|
|
390
|
+
assert_eq(darr, nparr)
|
|
391
|
+
|
|
392
|
+
darr = da.indices((2, 3), chunks=(1, 2))
|
|
393
|
+
nparr = np.indices((2, 3))
|
|
394
|
+
assert_eq(darr, nparr)
|
|
395
|
+
|
|
396
|
+
|
|
397
|
+
@pytest.mark.parametrize(
|
|
398
|
+
"shapes, chunks",
|
|
399
|
+
[
|
|
400
|
+
([()], [()]),
|
|
401
|
+
([(0,)], [(0,)]),
|
|
402
|
+
([(2,), (3,)], [(1,), (2,)]),
|
|
403
|
+
([(2,), (3,), (4,)], [(1,), (2,), (3,)]),
|
|
404
|
+
([(2,), (3,), (4,), (5,)], [(1,), (2,), (3,), (4,)]),
|
|
405
|
+
([(2, 3), (4,)], [(1, 2), (3,)]),
|
|
406
|
+
],
|
|
407
|
+
)
|
|
408
|
+
@pytest.mark.parametrize("indexing", ["ij", "xy"])
|
|
409
|
+
@pytest.mark.parametrize("sparse", [False, True])
|
|
410
|
+
def test_meshgrid(shapes, chunks, indexing, sparse):
|
|
411
|
+
xi_a = []
|
|
412
|
+
xi_d = []
|
|
413
|
+
xi_dc = []
|
|
414
|
+
for each_shape, each_chunk in zip(shapes, chunks):
|
|
415
|
+
xi_a.append(np.random.random(each_shape))
|
|
416
|
+
xi_d_e = da.from_array(xi_a[-1], chunks=each_chunk)
|
|
417
|
+
xi_d.append(xi_d_e)
|
|
418
|
+
xi_d_ef = xi_d_e.flatten()
|
|
419
|
+
xi_dc.append(xi_d_ef.chunks[0])
|
|
420
|
+
do = list(range(len(xi_dc)))
|
|
421
|
+
if indexing == "xy" and len(xi_dc) > 1:
|
|
422
|
+
do[0], do[1] = do[1], do[0]
|
|
423
|
+
xi_dc[0], xi_dc[1] = xi_dc[1], xi_dc[0]
|
|
424
|
+
xi_dc = tuple(xi_dc)
|
|
425
|
+
|
|
426
|
+
r_a = np.meshgrid(*xi_a, indexing=indexing, sparse=sparse)
|
|
427
|
+
r_d = da.meshgrid(*xi_d, indexing=indexing, sparse=sparse)
|
|
428
|
+
|
|
429
|
+
assert type(r_d) is type(r_a)
|
|
430
|
+
assert len(r_a) == len(r_d)
|
|
431
|
+
|
|
432
|
+
for e_r_a, e_r_d, i in zip(r_a, r_d, do):
|
|
433
|
+
assert_eq(e_r_a, e_r_d)
|
|
434
|
+
if sparse:
|
|
435
|
+
assert e_r_d.chunks[i] == xi_dc[i]
|
|
436
|
+
else:
|
|
437
|
+
assert e_r_d.chunks == xi_dc
|
|
438
|
+
|
|
439
|
+
|
|
440
|
+
def test_meshgrid_inputcoercion():
|
|
441
|
+
a = [1, 2, 3]
|
|
442
|
+
b = np.array([4, 5, 6, 7])
|
|
443
|
+
x, y = np.meshgrid(a, b, indexing="ij")
|
|
444
|
+
z = x * y
|
|
445
|
+
|
|
446
|
+
x_d, y_d = da.meshgrid(a, b, indexing="ij")
|
|
447
|
+
z_d = x_d * y_d
|
|
448
|
+
|
|
449
|
+
assert z_d.shape == (len(a), len(b))
|
|
450
|
+
assert_eq(z, z_d)
|
|
451
|
+
|
|
452
|
+
|
|
453
|
+
@pytest.mark.parametrize(
|
|
454
|
+
"N, M, k, dtype, chunks",
|
|
455
|
+
[
|
|
456
|
+
(3, None, 0, float, "auto"),
|
|
457
|
+
(4, None, 0, float, "auto"),
|
|
458
|
+
(3, 4, 0, bool, "auto"),
|
|
459
|
+
(3, None, 1, int, "auto"),
|
|
460
|
+
(3, None, -1, int, "auto"),
|
|
461
|
+
(3, None, 2, int, 1),
|
|
462
|
+
(6, 8, -2, int, (3, 4)),
|
|
463
|
+
(6, 8, 0, int, (3, "auto")),
|
|
464
|
+
],
|
|
465
|
+
)
|
|
466
|
+
def test_tri(N, M, k, dtype, chunks):
|
|
467
|
+
assert_eq(da.tri(N, M, k, dtype, chunks), np.tri(N, M, k, dtype))
|
|
468
|
+
|
|
469
|
+
|
|
470
|
+
def test_eye():
|
|
471
|
+
assert_eq(da.eye(9, chunks=3), np.eye(9))
|
|
472
|
+
assert_eq(da.eye(9), np.eye(9))
|
|
473
|
+
assert_eq(da.eye(10, chunks=3), np.eye(10))
|
|
474
|
+
assert_eq(da.eye(9, chunks=3, M=11), np.eye(9, M=11))
|
|
475
|
+
assert_eq(da.eye(11, chunks=3, M=9), np.eye(11, M=9))
|
|
476
|
+
assert_eq(da.eye(7, chunks=3, M=11), np.eye(7, M=11))
|
|
477
|
+
assert_eq(da.eye(11, chunks=3, M=7), np.eye(11, M=7))
|
|
478
|
+
assert_eq(da.eye(9, chunks=3, k=2), np.eye(9, k=2))
|
|
479
|
+
assert_eq(da.eye(9, chunks=3, k=-2), np.eye(9, k=-2))
|
|
480
|
+
assert_eq(da.eye(7, chunks=3, M=11, k=5), np.eye(7, M=11, k=5))
|
|
481
|
+
assert_eq(da.eye(11, chunks=3, M=7, k=-6), np.eye(11, M=7, k=-6))
|
|
482
|
+
assert_eq(da.eye(6, chunks=3, M=9, k=7), np.eye(6, M=9, k=7))
|
|
483
|
+
assert_eq(da.eye(12, chunks=3, M=6, k=-3), np.eye(12, M=6, k=-3))
|
|
484
|
+
|
|
485
|
+
assert_eq(da.eye(9, chunks=3, dtype=int), np.eye(9, dtype=int))
|
|
486
|
+
assert_eq(da.eye(10, chunks=3, dtype=int), np.eye(10, dtype=int))
|
|
487
|
+
assert_eq(da.eye(10, chunks=-1, dtype=int), np.eye(10, dtype=int))
|
|
488
|
+
assert_eq(da.eye(9, chunks=3, dtype=None), np.eye(9, dtype=None))
|
|
489
|
+
|
|
490
|
+
with dask.config.set({"array.chunk-size": "50 MiB"}):
|
|
491
|
+
x = da.eye(10000, "auto")
|
|
492
|
+
assert 4 < x.npartitions < 32
|
|
493
|
+
|
|
494
|
+
|
|
495
|
+
@pytest.mark.parametrize("k", [0, 3, -3, 8])
|
|
496
|
+
def test_diag_bad_input(k):
|
|
497
|
+
# when input numpy array is neither 1d nor 2d:
|
|
498
|
+
v = np.arange(2 * 3 * 4).reshape((2, 3, 4))
|
|
499
|
+
with pytest.raises(ValueError, match="Array must be 1d or 2d only"):
|
|
500
|
+
da.diag(v, k)
|
|
501
|
+
|
|
502
|
+
# when input dask array is neither 1d nor 2d:
|
|
503
|
+
v = da.arange(2 * 3 * 4).reshape((2, 3, 4))
|
|
504
|
+
with pytest.raises(ValueError, match="Array must be 1d or 2d only"):
|
|
505
|
+
da.diag(v, k)
|
|
506
|
+
|
|
507
|
+
# when input is not an array:
|
|
508
|
+
v = 1
|
|
509
|
+
with pytest.raises(TypeError, match="v must be a dask array or numpy array"):
|
|
510
|
+
da.diag(v, k)
|
|
511
|
+
|
|
512
|
+
|
|
513
|
+
@pytest.mark.parametrize("k", [0, 3, -3, 8])
|
|
514
|
+
def test_diag_2d_array_creation(k):
|
|
515
|
+
# when input 1d-array is a numpy array:
|
|
516
|
+
v = np.arange(11)
|
|
517
|
+
assert_eq(da.diag(v, k), np.diag(v, k))
|
|
518
|
+
|
|
519
|
+
# when input 1d-array is a dask array:
|
|
520
|
+
v = da.arange(11, chunks=3)
|
|
521
|
+
darr = da.diag(v, k)
|
|
522
|
+
nparr = np.diag(v, k)
|
|
523
|
+
assert_eq(darr, nparr)
|
|
524
|
+
assert sorted(da.diag(v, k).dask) == sorted(da.diag(v, k).dask)
|
|
525
|
+
|
|
526
|
+
v = v + v + 3
|
|
527
|
+
darr = da.diag(v, k)
|
|
528
|
+
nparr = np.diag(v, k)
|
|
529
|
+
assert_eq(darr, nparr)
|
|
530
|
+
|
|
531
|
+
v = da.arange(11, chunks=11)
|
|
532
|
+
darr = da.diag(v, k)
|
|
533
|
+
nparr = np.diag(v, k)
|
|
534
|
+
assert_eq(darr, nparr)
|
|
535
|
+
assert sorted(da.diag(v, k).dask) == sorted(da.diag(v, k).dask)
|
|
536
|
+
|
|
537
|
+
|
|
538
|
+
@pytest.mark.parametrize("k", [0, 3, -3, 8])
|
|
539
|
+
def test_diag_extraction(k):
|
|
540
|
+
# when input 2d-array is a square numpy array:
|
|
541
|
+
x = np.arange(64).reshape((8, 8))
|
|
542
|
+
assert_eq(da.diag(x, k), np.diag(x, k))
|
|
543
|
+
# when input 2d-array is a square dask array:
|
|
544
|
+
d = da.from_array(x, chunks=(4, 4))
|
|
545
|
+
assert_eq(da.diag(d, k), np.diag(x, k))
|
|
546
|
+
# heterogeneous chunks:
|
|
547
|
+
d = da.from_array(x, chunks=((3, 2, 3), (4, 1, 2, 1)))
|
|
548
|
+
assert_eq(da.diag(d, k), np.diag(x, k))
|
|
549
|
+
|
|
550
|
+
# when input 2d-array is a rectangular numpy array:
|
|
551
|
+
y = np.arange(5 * 8).reshape((5, 8))
|
|
552
|
+
assert_eq(da.diag(y, k), np.diag(y, k))
|
|
553
|
+
# when input 2d-array is a rectangular dask array:
|
|
554
|
+
d = da.from_array(y, chunks=(4, 4))
|
|
555
|
+
assert_eq(da.diag(d, k), np.diag(y, k))
|
|
556
|
+
# heterogeneous chunks:
|
|
557
|
+
d = da.from_array(y, chunks=((3, 2), (4, 1, 2, 1)))
|
|
558
|
+
assert_eq(da.diag(d, k), np.diag(y, k))
|
|
559
|
+
|
|
560
|
+
|
|
561
|
+
@pytest.mark.skip(reason="data_producer not implemented")
|
|
562
|
+
def test_creation_data_producers():
|
|
563
|
+
x = np.arange(64).reshape((8, 8))
|
|
564
|
+
d = da.from_array(x, chunks=(4, 4))
|
|
565
|
+
dsk = collections_to_expr([d]).__dask_graph__()
|
|
566
|
+
assert all(v.data_producer for v in dsk.values())
|
|
567
|
+
|
|
568
|
+
# blockwise fusion
|
|
569
|
+
x = d.astype("float64")
|
|
570
|
+
dsk = collections_to_expr([x]).__dask_graph__()
|
|
571
|
+
assert sum(v.data_producer for v in dsk.values()) == 4
|
|
572
|
+
assert sum(isinstance(v, Alias) for v in dsk.values()) == 4
|
|
573
|
+
assert len(dsk) == 8
|
|
574
|
+
|
|
575
|
+
# linear fusion
|
|
576
|
+
x = d[slice(0, 6), None].astype("float64")
|
|
577
|
+
dsk = collections_to_expr([x]).__dask_graph__()
|
|
578
|
+
assert sum(v.data_producer for v in dsk.values()) == 4
|
|
579
|
+
assert sum(isinstance(v, Alias) for v in dsk.values()) == 4
|
|
580
|
+
assert len(dsk) == 8
|
|
581
|
+
|
|
582
|
+
# no fusion
|
|
583
|
+
x = d[[1, 3, 5, 7, 6, 4, 2, 0]].astype("float64")
|
|
584
|
+
dsk = collections_to_expr([x]).__dask_graph__()
|
|
585
|
+
assert sum(v.data_producer and "array-" in k[0] for k, v in dsk.items()) == 4
|
|
586
|
+
assert sum(v.data_producer for v in dsk.values()) == 8 # getitem data nodes
|
|
587
|
+
assert len(dsk) == 24
|
|
588
|
+
|
|
589
|
+
|
|
590
|
+
def test_diagonal():
|
|
591
|
+
v = np.arange(11)
|
|
592
|
+
with pytest.raises(ValueError):
|
|
593
|
+
da.diagonal(v)
|
|
594
|
+
|
|
595
|
+
v = np.arange(4).reshape((2, 2))
|
|
596
|
+
with pytest.raises(ValueError):
|
|
597
|
+
da.diagonal(v, axis1=0, axis2=0)
|
|
598
|
+
|
|
599
|
+
with pytest.raises(AxisError):
|
|
600
|
+
da.diagonal(v, axis1=-4)
|
|
601
|
+
|
|
602
|
+
with pytest.raises(AxisError):
|
|
603
|
+
da.diagonal(v, axis2=-4)
|
|
604
|
+
|
|
605
|
+
v = np.arange(4 * 5 * 6).reshape((4, 5, 6))
|
|
606
|
+
v = da.from_array(v, chunks=2)
|
|
607
|
+
assert_eq(da.diagonal(v), np.diagonal(v))
|
|
608
|
+
# Empty diagonal.
|
|
609
|
+
assert_eq(da.diagonal(v, offset=10), np.diagonal(v, offset=10))
|
|
610
|
+
assert_eq(da.diagonal(v, offset=-10), np.diagonal(v, offset=-10))
|
|
611
|
+
|
|
612
|
+
with pytest.raises(ValueError):
|
|
613
|
+
da.diagonal(v, axis1=-2)
|
|
614
|
+
|
|
615
|
+
# Negative axis.
|
|
616
|
+
assert_eq(da.diagonal(v, axis1=-1), np.diagonal(v, axis1=-1))
|
|
617
|
+
assert_eq(da.diagonal(v, offset=1, axis1=-1), np.diagonal(v, offset=1, axis1=-1))
|
|
618
|
+
|
|
619
|
+
# Heterogeneous chunks.
|
|
620
|
+
v = np.arange(2 * 3 * 4 * 5 * 6).reshape((2, 3, 4, 5, 6))
|
|
621
|
+
v = da.from_array(v, chunks=(1, (1, 2), (1, 2, 1), (2, 1, 2), (5, 1)))
|
|
622
|
+
|
|
623
|
+
assert_eq(da.diagonal(v), np.diagonal(v))
|
|
624
|
+
assert_eq(
|
|
625
|
+
da.diagonal(v, offset=2, axis1=3, axis2=1),
|
|
626
|
+
np.diagonal(v, offset=2, axis1=3, axis2=1),
|
|
627
|
+
)
|
|
628
|
+
|
|
629
|
+
assert_eq(
|
|
630
|
+
da.diagonal(v, offset=-2, axis1=3, axis2=1),
|
|
631
|
+
np.diagonal(v, offset=-2, axis1=3, axis2=1),
|
|
632
|
+
)
|
|
633
|
+
|
|
634
|
+
assert_eq(
|
|
635
|
+
da.diagonal(v, offset=-2, axis1=3, axis2=4),
|
|
636
|
+
np.diagonal(v, offset=-2, axis1=3, axis2=4),
|
|
637
|
+
)
|
|
638
|
+
|
|
639
|
+
assert_eq(da.diagonal(v, 1), np.diagonal(v, 1))
|
|
640
|
+
assert_eq(da.diagonal(v, -1), np.diagonal(v, -1))
|
|
641
|
+
# Positional arguments
|
|
642
|
+
assert_eq(da.diagonal(v, 1, 2, 1), np.diagonal(v, 1, 2, 1))
|
|
643
|
+
|
|
644
|
+
v = np.arange(2 * 3 * 4 * 5 * 6).reshape((2, 3, 4, 5, 6))
|
|
645
|
+
assert_eq(da.diagonal(v, axis1=1, axis2=3), np.diagonal(v, axis1=1, axis2=3))
|
|
646
|
+
assert_eq(
|
|
647
|
+
da.diagonal(v, offset=1, axis1=1, axis2=3),
|
|
648
|
+
np.diagonal(v, offset=1, axis1=1, axis2=3),
|
|
649
|
+
)
|
|
650
|
+
|
|
651
|
+
assert_eq(
|
|
652
|
+
da.diagonal(v, offset=1, axis1=3, axis2=1),
|
|
653
|
+
np.diagonal(v, offset=1, axis1=3, axis2=1),
|
|
654
|
+
)
|
|
655
|
+
|
|
656
|
+
assert_eq(
|
|
657
|
+
da.diagonal(v, offset=-5, axis1=3, axis2=1),
|
|
658
|
+
np.diagonal(v, offset=-5, axis1=3, axis2=1),
|
|
659
|
+
)
|
|
660
|
+
|
|
661
|
+
assert_eq(
|
|
662
|
+
da.diagonal(v, offset=-6, axis1=3, axis2=1),
|
|
663
|
+
np.diagonal(v, offset=-6, axis1=3, axis2=1),
|
|
664
|
+
)
|
|
665
|
+
|
|
666
|
+
assert_eq(
|
|
667
|
+
da.diagonal(v, offset=-6, axis1=-3, axis2=1),
|
|
668
|
+
np.diagonal(v, offset=-6, axis1=-3, axis2=1),
|
|
669
|
+
)
|
|
670
|
+
|
|
671
|
+
assert_eq(
|
|
672
|
+
da.diagonal(v, offset=-6, axis1=-3, axis2=1),
|
|
673
|
+
np.diagonal(v, offset=-6, axis1=-3, axis2=1),
|
|
674
|
+
)
|
|
675
|
+
|
|
676
|
+
v = da.from_array(v, chunks=2)
|
|
677
|
+
assert_eq(
|
|
678
|
+
da.diagonal(v, offset=1, axis1=3, axis2=1),
|
|
679
|
+
np.diagonal(v, offset=1, axis1=3, axis2=1),
|
|
680
|
+
)
|
|
681
|
+
assert_eq(
|
|
682
|
+
da.diagonal(v, offset=-1, axis1=3, axis2=1),
|
|
683
|
+
np.diagonal(v, offset=-1, axis1=3, axis2=1),
|
|
684
|
+
)
|
|
685
|
+
|
|
686
|
+
v = np.arange(384).reshape((8, 8, 6))
|
|
687
|
+
assert_eq(da.diagonal(v, offset=-1, axis1=2), np.diagonal(v, offset=-1, axis1=2))
|
|
688
|
+
|
|
689
|
+
v = da.from_array(v, chunks=(4, 4, 2))
|
|
690
|
+
assert_eq(da.diagonal(v, offset=-1, axis1=2), np.diagonal(v, offset=-1, axis1=2))
|
|
691
|
+
|
|
692
|
+
|
|
693
|
+
@pytest.mark.parametrize("dtype", [None, "f8", "i8"])
|
|
694
|
+
@pytest.mark.parametrize(
|
|
695
|
+
"func, kwargs",
|
|
696
|
+
[
|
|
697
|
+
(lambda x, y: x + y, {}),
|
|
698
|
+
(lambda x, y, c=1: x + c * y, {}),
|
|
699
|
+
(lambda x, y, c=1: x + c * y, {"c": 3}),
|
|
700
|
+
],
|
|
701
|
+
)
|
|
702
|
+
def test_fromfunction(func, dtype, kwargs):
|
|
703
|
+
a = np.fromfunction(func, shape=(5, 5), dtype=dtype, **kwargs)
|
|
704
|
+
d = da.fromfunction(func, shape=(5, 5), chunks=(2, 2), dtype=dtype, **kwargs)
|
|
705
|
+
|
|
706
|
+
assert_eq(d, a)
|
|
707
|
+
|
|
708
|
+
d2 = da.fromfunction(func, shape=(5, 5), chunks=(2, 2), dtype=dtype, **kwargs)
|
|
709
|
+
|
|
710
|
+
assert same_keys(d, d2)
|
|
711
|
+
|
|
712
|
+
|
|
713
|
+
def test_repeat():
|
|
714
|
+
x = np.random.random((10, 11, 13))
|
|
715
|
+
d = da.from_array(x, chunks=(4, 5, 3))
|
|
716
|
+
|
|
717
|
+
repeats = [0, 1, 2, 5]
|
|
718
|
+
axes = [-3, -2, -1, 0, 1, 2]
|
|
719
|
+
|
|
720
|
+
for r in repeats:
|
|
721
|
+
for a in axes:
|
|
722
|
+
assert_eq(x.repeat(r, axis=a), d.repeat(r, axis=a))
|
|
723
|
+
|
|
724
|
+
assert_eq(d.repeat(2, 0), da.repeat(d, 2, 0))
|
|
725
|
+
|
|
726
|
+
with pytest.raises(NotImplementedError):
|
|
727
|
+
da.repeat(d, np.arange(10))
|
|
728
|
+
|
|
729
|
+
with pytest.raises(NotImplementedError):
|
|
730
|
+
da.repeat(d, 2, None)
|
|
731
|
+
|
|
732
|
+
with pytest.raises(NotImplementedError):
|
|
733
|
+
da.repeat(d, 2)
|
|
734
|
+
|
|
735
|
+
for invalid_axis in [3, -4]:
|
|
736
|
+
with pytest.raises(ValueError):
|
|
737
|
+
da.repeat(d, 2, axis=invalid_axis)
|
|
738
|
+
|
|
739
|
+
x = np.arange(5)
|
|
740
|
+
d = da.arange(5, chunks=(2,))
|
|
741
|
+
|
|
742
|
+
assert_eq(x.repeat(3), d.repeat(3))
|
|
743
|
+
|
|
744
|
+
for r in [1, 2, 3, 4]:
|
|
745
|
+
assert all(concat(d.repeat(r).chunks))
|
|
746
|
+
|
|
747
|
+
|
|
748
|
+
@pytest.mark.parametrize("reps", [2, (2, 2), (1, 2), (2, 1), (2, 3, 4, 0)])
|
|
749
|
+
def test_tile_basic(reps):
|
|
750
|
+
a = da.asarray([0, 1, 2])
|
|
751
|
+
b = [[1, 2], [3, 4]]
|
|
752
|
+
|
|
753
|
+
assert_eq(np.tile(a.compute(), reps), da.tile(a, reps))
|
|
754
|
+
assert_eq(np.tile(b, reps), da.tile(b, reps))
|
|
755
|
+
|
|
756
|
+
|
|
757
|
+
@pytest.mark.parametrize("shape, chunks", [((10,), (1,)), ((10, 11, 13), (4, 5, 3))])
|
|
758
|
+
@pytest.mark.parametrize("reps", [0, 1, 2, 3, 5, (1,), (1, 2)])
|
|
759
|
+
def test_tile_chunks(shape, chunks, reps):
|
|
760
|
+
x = np.random.random(shape)
|
|
761
|
+
d = da.from_array(x, chunks=chunks)
|
|
762
|
+
|
|
763
|
+
assert_eq(np.tile(x, reps), da.tile(d, reps))
|
|
764
|
+
|
|
765
|
+
|
|
766
|
+
@pytest.mark.parametrize("shape, chunks", [((10,), (1,)), ((10, 11, 13), (4, 5, 3))])
|
|
767
|
+
@pytest.mark.parametrize("reps", [-1, -5])
|
|
768
|
+
def test_tile_neg_reps(shape, chunks, reps):
|
|
769
|
+
x = np.random.random(shape)
|
|
770
|
+
d = da.from_array(x, chunks=chunks)
|
|
771
|
+
|
|
772
|
+
with pytest.raises(ValueError):
|
|
773
|
+
da.tile(d, reps)
|
|
774
|
+
|
|
775
|
+
|
|
776
|
+
@pytest.mark.parametrize("shape, chunks", [((10,), (1,)), ((10, 11, 13), (4, 5, 3))])
|
|
777
|
+
@pytest.mark.parametrize("reps", [0, (0,), (2, 0), (0, 3, 0, 4)])
|
|
778
|
+
def test_tile_zero_reps(shape, chunks, reps):
|
|
779
|
+
x = np.random.random(shape)
|
|
780
|
+
d = da.from_array(x, chunks=chunks)
|
|
781
|
+
|
|
782
|
+
assert_eq(np.tile(x, reps), da.tile(d, reps))
|
|
783
|
+
|
|
784
|
+
|
|
785
|
+
@pytest.mark.parametrize("shape, chunks", [((1, 1, 0), (1, 1, 0)), ((2, 0), (1, 0))])
|
|
786
|
+
@pytest.mark.parametrize("reps", [2, (3, 2, 5)])
|
|
787
|
+
def test_tile_empty_array(shape, chunks, reps):
|
|
788
|
+
x = np.empty(shape)
|
|
789
|
+
d = da.from_array(x, chunks=chunks)
|
|
790
|
+
|
|
791
|
+
assert_eq(np.tile(x, reps), da.tile(d, reps))
|
|
792
|
+
|
|
793
|
+
|
|
794
|
+
@pytest.mark.parametrize("shape", [(3,), (2, 3), (3, 4, 3), (3, 2, 3), (4, 3, 2, 4), (2, 2)])
|
|
795
|
+
@pytest.mark.parametrize("reps", [(2,), (1, 2), (2, 1), (2, 2), (2, 3, 2), (3, 2)])
|
|
796
|
+
def test_tile_np_kroncompare_examples(shape, reps):
|
|
797
|
+
x = np.random.random(shape)
|
|
798
|
+
d = da.asarray(x)
|
|
799
|
+
|
|
800
|
+
assert_eq(np.tile(x, reps), da.tile(d, reps))
|
|
801
|
+
|
|
802
|
+
|
|
803
|
+
@pytest.mark.parametrize(
|
|
804
|
+
"shape, chunks, pad_width, mode, kwargs",
|
|
805
|
+
[
|
|
806
|
+
((10, 11), (4, 5), 0, "constant", {"constant_values": 2}),
|
|
807
|
+
((10, 11), (4, 5), 0, "edge", {}),
|
|
808
|
+
((10, 11), (4, 5), 0, "linear_ramp", {"end_values": 2}),
|
|
809
|
+
((10, 11), (4, 5), 0, "reflect", {}),
|
|
810
|
+
((10, 11), (4, 5), 0, "symmetric", {}),
|
|
811
|
+
((10, 11), (4, 5), 0, "wrap", {}),
|
|
812
|
+
((10, 11), (4, 5), 0, "empty", {}),
|
|
813
|
+
],
|
|
814
|
+
)
|
|
815
|
+
def test_pad_0_width(shape, chunks, pad_width, mode, kwargs):
|
|
816
|
+
np_a = np.random.random(shape)
|
|
817
|
+
da_a = da.from_array(np_a, chunks=chunks)
|
|
818
|
+
|
|
819
|
+
np_r = np.pad(np_a, pad_width, mode, **kwargs)
|
|
820
|
+
da_r = da.pad(da_a, pad_width, mode, **kwargs)
|
|
821
|
+
|
|
822
|
+
assert da_r is da_a
|
|
823
|
+
|
|
824
|
+
assert_eq(np_r, da_r)
|
|
825
|
+
|
|
826
|
+
|
|
827
|
+
@pytest.mark.parametrize(
|
|
828
|
+
"shape, chunks, pad_width, mode, kwargs",
|
|
829
|
+
[
|
|
830
|
+
((10,), (3,), 1, "constant", {}),
|
|
831
|
+
((10,), (3,), 2, "constant", {"constant_values": -1}),
|
|
832
|
+
((10,), (3,), 2, "constant", {"constant_values": np.array(-1)}),
|
|
833
|
+
((10,), (3,), ((2, 3)), "constant", {"constant_values": (-1, -2)}),
|
|
834
|
+
(
|
|
835
|
+
(10, 11),
|
|
836
|
+
(4, 5),
|
|
837
|
+
((1, 4), (2, 3)),
|
|
838
|
+
"constant",
|
|
839
|
+
{"constant_values": ((-1, -2), (2, 1))},
|
|
840
|
+
),
|
|
841
|
+
((10,), (3,), 3, "edge", {}),
|
|
842
|
+
((10,), (3,), 3, "linear_ramp", {}),
|
|
843
|
+
((10,), (3,), 3, "linear_ramp", {"end_values": 0}),
|
|
844
|
+
(
|
|
845
|
+
(10, 11),
|
|
846
|
+
(4, 5),
|
|
847
|
+
((1, 4), (2, 3)),
|
|
848
|
+
"linear_ramp",
|
|
849
|
+
{"end_values": ((-1, -2), (4, 3))},
|
|
850
|
+
),
|
|
851
|
+
((10, 11), (4, 5), ((1, 4), (2, 3)), "reflect", {}),
|
|
852
|
+
((10, 11), (4, 5), ((1, 4), (2, 3)), "symmetric", {}),
|
|
853
|
+
((10, 11), (4, 5), ((1, 4), (2, 3)), "wrap", {}),
|
|
854
|
+
((10,), (3,), ((2, 3)), "maximum", {"stat_length": (1, 2)}),
|
|
855
|
+
((10, 11), (4, 5), ((1, 4), (2, 3)), "mean", {"stat_length": ((3, 4), (2, 1))}),
|
|
856
|
+
((10,), (3,), ((2, 3)), "minimum", {"stat_length": (2, 3)}),
|
|
857
|
+
((10,), (3,), 1, "empty", {}),
|
|
858
|
+
],
|
|
859
|
+
)
|
|
860
|
+
def test_pad(shape, chunks, pad_width, mode, kwargs):
|
|
861
|
+
np_a = np.random.random(shape)
|
|
862
|
+
da_a = da.from_array(np_a, chunks=chunks)
|
|
863
|
+
|
|
864
|
+
np_r = np.pad(np_a, pad_width, mode, **kwargs)
|
|
865
|
+
da_r = da.pad(da_a, pad_width, mode, **kwargs)
|
|
866
|
+
|
|
867
|
+
if mode == "empty":
|
|
868
|
+
# empty pads lead to undefined values which may be different
|
|
869
|
+
assert_eq(np_r[pad_width:-pad_width], da_r[pad_width:-pad_width])
|
|
870
|
+
else:
|
|
871
|
+
assert_eq(np_r, da_r)
|
|
872
|
+
|
|
873
|
+
|
|
874
|
+
@pytest.mark.parametrize(
|
|
875
|
+
["np_a", "pad_value"],
|
|
876
|
+
(
|
|
877
|
+
(np.arange(4, dtype="int64"), np.int64(1)),
|
|
878
|
+
(np.arange(4, dtype="float64"), np.float64(0)),
|
|
879
|
+
(
|
|
880
|
+
np.array(
|
|
881
|
+
["2000-01-01", "2000-01-02", "2000-01-03", "2000-01-04"],
|
|
882
|
+
dtype="datetime64[ns]",
|
|
883
|
+
),
|
|
884
|
+
np.datetime64("1972-01-01"),
|
|
885
|
+
),
|
|
886
|
+
(np.array([True, False, True, True], dtype=np.bool_), np.bool_(False)),
|
|
887
|
+
(np.array(["ab", "bc", "de", "ef"], dtype=np.str_), np.str_("00")),
|
|
888
|
+
(np.arange(4, dtype="int64"), np.array(1, dtype="int64")),
|
|
889
|
+
(np.arange(4, dtype="float64"), np.array(0, dtype="float64")),
|
|
890
|
+
(
|
|
891
|
+
np.array(
|
|
892
|
+
["2000-01-01", "2000-01-02", "2000-01-03", "2000-01-04"],
|
|
893
|
+
dtype="datetime64[ns]",
|
|
894
|
+
),
|
|
895
|
+
np.array("1972-01-01", dtype="datetime64[ns]"),
|
|
896
|
+
),
|
|
897
|
+
(
|
|
898
|
+
np.array([True, False, True, True], dtype=np.bool_),
|
|
899
|
+
np.array(False, dtype=np.bool_),
|
|
900
|
+
),
|
|
901
|
+
(
|
|
902
|
+
np.array(["ab", "bc", "de", "ef"], dtype=np.str_),
|
|
903
|
+
np.array("00", dtype=np.str_),
|
|
904
|
+
),
|
|
905
|
+
),
|
|
906
|
+
)
|
|
907
|
+
def test_pad_constant_values(np_a, pad_value):
|
|
908
|
+
pad_width = (1, 1)
|
|
909
|
+
da_a = da.from_array(np_a, chunks=(2,))
|
|
910
|
+
|
|
911
|
+
np_r = np.pad(np_a, pad_width, mode="constant", constant_values=pad_value)
|
|
912
|
+
da_r = da.pad(da_a, pad_width, mode="constant", constant_values=pad_value)
|
|
913
|
+
|
|
914
|
+
assert_eq(np_r, da_r)
|
|
915
|
+
|
|
916
|
+
|
|
917
|
+
@pytest.mark.parametrize("dtype", [np.uint8, np.int16, np.float32, bool])
|
|
918
|
+
@pytest.mark.parametrize("pad_widths", [2, (2,), (2, 3), ((2, 3),), ((3, 1), (0, 0), (2, 0))])
|
|
919
|
+
@pytest.mark.parametrize(
|
|
920
|
+
"mode",
|
|
921
|
+
[
|
|
922
|
+
"constant",
|
|
923
|
+
"edge",
|
|
924
|
+
"linear_ramp",
|
|
925
|
+
"maximum",
|
|
926
|
+
"mean",
|
|
927
|
+
"minimum",
|
|
928
|
+
pytest.param(
|
|
929
|
+
"reflect",
|
|
930
|
+
marks=pytest.mark.skip(
|
|
931
|
+
reason="Bug when pad_width is larger than dimension: https://github.com/dask/dask/issues/5303"
|
|
932
|
+
),
|
|
933
|
+
),
|
|
934
|
+
pytest.param(
|
|
935
|
+
"symmetric",
|
|
936
|
+
marks=pytest.mark.skip(
|
|
937
|
+
reason="Bug when pad_width is larger than dimension: https://github.com/dask/dask/issues/5303"
|
|
938
|
+
),
|
|
939
|
+
),
|
|
940
|
+
pytest.param(
|
|
941
|
+
"wrap",
|
|
942
|
+
marks=pytest.mark.skip(
|
|
943
|
+
reason="Bug when pad_width is larger than dimension: https://github.com/dask/dask/issues/5303"
|
|
944
|
+
),
|
|
945
|
+
),
|
|
946
|
+
pytest.param(
|
|
947
|
+
"median",
|
|
948
|
+
marks=pytest.mark.skip(reason="Not implemented"),
|
|
949
|
+
),
|
|
950
|
+
pytest.param(
|
|
951
|
+
"empty",
|
|
952
|
+
marks=pytest.mark.skip(reason="Empty leads to undefined values, which may be different"),
|
|
953
|
+
),
|
|
954
|
+
],
|
|
955
|
+
)
|
|
956
|
+
def test_pad_3d_data(dtype, pad_widths, mode):
|
|
957
|
+
np_a = np.arange(2 * 3 * 4).reshape(2, 3, 4).astype(dtype)
|
|
958
|
+
da_a = da.from_array(np_a, chunks="auto")
|
|
959
|
+
|
|
960
|
+
np_r = np.pad(np_a, pad_widths, mode=mode)
|
|
961
|
+
da_r = da.pad(da_a, pad_widths, mode=mode)
|
|
962
|
+
|
|
963
|
+
assert_eq(np_r, da_r)
|
|
964
|
+
|
|
965
|
+
|
|
966
|
+
@pytest.mark.parametrize("kwargs", [{}, {"scaler": 2}])
|
|
967
|
+
def test_pad_udf(kwargs):
|
|
968
|
+
def udf_pad(vector, pad_width, iaxis, inner_kwargs):
|
|
969
|
+
assert kwargs == inner_kwargs
|
|
970
|
+
scaler = inner_kwargs.get("scaler", 1)
|
|
971
|
+
vector[: pad_width[0]] = -scaler * pad_width[0]
|
|
972
|
+
vector[-pad_width[1] :] = scaler * pad_width[1]
|
|
973
|
+
return vector
|
|
974
|
+
|
|
975
|
+
shape = (10, 11)
|
|
976
|
+
chunks = (4, 5)
|
|
977
|
+
pad_width = ((1, 2), (2, 3))
|
|
978
|
+
|
|
979
|
+
np_a = np.random.random(shape)
|
|
980
|
+
da_a = da.from_array(np_a, chunks=chunks)
|
|
981
|
+
|
|
982
|
+
np_r = np.pad(np_a, pad_width, udf_pad, **kwargs)
|
|
983
|
+
da_r = da.pad(da_a, pad_width, udf_pad, **kwargs)
|
|
984
|
+
|
|
985
|
+
assert_eq(np_r, da_r)
|
|
986
|
+
|
|
987
|
+
|
|
988
|
+
def test_pad_constant_chunksizes():
|
|
989
|
+
array = da.ones((10, 10), chunks=(1, 1))
|
|
990
|
+
result = da.pad(array, ((0, 16 - 10), (0, 0)), mode="constant", constant_values=0)
|
|
991
|
+
assert tuple(map(max, result.chunks)) == (1, 1)
|
|
992
|
+
assert_eq(
|
|
993
|
+
result,
|
|
994
|
+
np.pad(
|
|
995
|
+
array.compute(),
|
|
996
|
+
mode="constant",
|
|
997
|
+
constant_values=0,
|
|
998
|
+
pad_width=((0, 16 - 10), (0, 0)),
|
|
999
|
+
),
|
|
1000
|
+
)
|
|
1001
|
+
|
|
1002
|
+
|
|
1003
|
+
def test_auto_chunks():
|
|
1004
|
+
with dask.config.set({"array.chunk-size": "50 MiB"}):
|
|
1005
|
+
x = da.ones((10000, 10000))
|
|
1006
|
+
assert 4 < x.npartitions < 32
|
|
1007
|
+
|
|
1008
|
+
|
|
1009
|
+
def test_string_auto_chunk():
|
|
1010
|
+
with pytest.raises(ValueError):
|
|
1011
|
+
da.full((10000, 10000), "auto_chunk", chunks="auto")
|
|
1012
|
+
|
|
1013
|
+
|
|
1014
|
+
def test_diagonal_zero_chunks():
|
|
1015
|
+
x = da.ones((8, 8), chunks=(4, 4))
|
|
1016
|
+
dd = da.ones((8, 8), chunks=(4, 4))
|
|
1017
|
+
d = da.diagonal(dd)
|
|
1018
|
+
|
|
1019
|
+
expected = np.ones((8,))
|
|
1020
|
+
assert_eq(d, expected)
|
|
1021
|
+
assert_eq(d + d, 2 * expected)
|
|
1022
|
+
A = d + x
|
|
1023
|
+
assert_eq(A, np.full((8, 8), 2.0))
|
|
1024
|
+
|
|
1025
|
+
|
|
1026
|
+
@pytest.mark.parametrize("fn", ["zeros_like", "ones_like"])
|
|
1027
|
+
@pytest.mark.parametrize("shape_chunks", [((50, 4), (10, 2)), ((50,), (10,))])
|
|
1028
|
+
@pytest.mark.parametrize("dtype", ["u4", np.float32, None, np.int64])
|
|
1029
|
+
def test_nan_zeros_ones_like(fn, shape_chunks, dtype):
|
|
1030
|
+
dafn = getattr(da, fn)
|
|
1031
|
+
npfn = getattr(np, fn)
|
|
1032
|
+
shape, chunks = shape_chunks
|
|
1033
|
+
x1 = da.random.standard_normal(size=shape, chunks=chunks)
|
|
1034
|
+
y1 = x1[x1 < 0.5]
|
|
1035
|
+
x2 = x1.compute()
|
|
1036
|
+
y2 = x2[x2 < 0.5]
|
|
1037
|
+
assert_eq(
|
|
1038
|
+
dafn(y1, dtype=dtype),
|
|
1039
|
+
npfn(y2, dtype=dtype),
|
|
1040
|
+
)
|
|
1041
|
+
|
|
1042
|
+
|
|
1043
|
+
def test_from_array_getitem_fused():
|
|
1044
|
+
arr = np.arange(100).reshape(10, 10)
|
|
1045
|
+
darr = da.from_array(arr, chunks=(5, 5))
|
|
1046
|
+
result = darr[slice(1, 5), :][slice(1, 3), :]
|
|
1047
|
+
|
|
1048
|
+
# Always check correctness
|
|
1049
|
+
assert_eq(result, arr[slice(1, 5), :][slice(1, 3), :])
|
|
1050
|
+
|
|
1051
|
+
|
|
1052
|
+
@pytest.mark.parametrize("shape_chunks", [((50, 4), (10, 2)), ((50,), (10,))])
|
|
1053
|
+
@pytest.mark.parametrize("dtype", ["u4", np.float32, None, np.int64])
|
|
1054
|
+
def test_nan_empty_like(shape_chunks, dtype):
|
|
1055
|
+
shape, chunks = shape_chunks
|
|
1056
|
+
x1 = da.random.standard_normal(size=shape, chunks=chunks)
|
|
1057
|
+
y1 = x1[x1 < 0.5]
|
|
1058
|
+
x2 = x1.compute()
|
|
1059
|
+
y2 = x2[x2 < 0.5]
|
|
1060
|
+
a_da = da.empty_like(y1, dtype=dtype).compute()
|
|
1061
|
+
a_np = np.empty_like(y2, dtype=dtype)
|
|
1062
|
+
assert a_da.shape == a_np.shape
|
|
1063
|
+
assert a_da.dtype == a_np.dtype
|
|
1064
|
+
|
|
1065
|
+
|
|
1066
|
+
@pytest.mark.parametrize("val", [0, 0.0, 99, -1])
|
|
1067
|
+
@pytest.mark.parametrize("shape_chunks", [((50, 4), (10, 2)), ((50,), (10,))])
|
|
1068
|
+
@pytest.mark.parametrize("dtype", ["u4", np.float32, None, np.int64])
|
|
1069
|
+
def test_nan_full_like(val, shape_chunks, dtype):
|
|
1070
|
+
if NUMPY_GE_210 and val == -1 and dtype == "u4":
|
|
1071
|
+
pytest.xfail("can't insert negative numbers into unsigned integer")
|
|
1072
|
+
shape, chunks = shape_chunks
|
|
1073
|
+
x1 = da.random.standard_normal(size=shape, chunks=chunks)
|
|
1074
|
+
y1 = x1[x1 < 0.5]
|
|
1075
|
+
x2 = x1.compute()
|
|
1076
|
+
y2 = x2[x2 < 0.5]
|
|
1077
|
+
assert_eq(
|
|
1078
|
+
da.full_like(y1, val, dtype=dtype),
|
|
1079
|
+
np.full_like(y2, val, dtype=dtype),
|
|
1080
|
+
)
|
|
1081
|
+
|
|
1082
|
+
|
|
1083
|
+
@pytest.mark.parametrize(
|
|
1084
|
+
"func",
|
|
1085
|
+
[
|
|
1086
|
+
da.array,
|
|
1087
|
+
da.asarray,
|
|
1088
|
+
da.asanyarray,
|
|
1089
|
+
pytest.param(da.arange, marks=pytest.mark.skip(reason="graph serialization differs")),
|
|
1090
|
+
pytest.param(da.tri, marks=pytest.mark.skip(reason="graph serialization differs")),
|
|
1091
|
+
],
|
|
1092
|
+
)
|
|
1093
|
+
def test_like_forgets_graph(func):
|
|
1094
|
+
"""Test that array creation functions with like=x do not
|
|
1095
|
+
internally store the graph of x
|
|
1096
|
+
"""
|
|
1097
|
+
x = da.arange(3).map_blocks(lambda x: x)
|
|
1098
|
+
with pytest.raises(Exception, match="local object"):
|
|
1099
|
+
pickle.dumps(x)
|
|
1100
|
+
|
|
1101
|
+
a = func(1, like=x)
|
|
1102
|
+
pickle.dumps(a)
|