darfix 4.2.0__py3-none-any.whl → 4.3.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- darfix/core/data_selection.py +11 -2
- darfix/core/dataset.py +72 -157
- darfix/core/grainplot.py +44 -56
- darfix/core/{imageStack.py → image_stack.py} +9 -15
- darfix/core/moment_types.py +6 -0
- darfix/core/{noiseremoval.py → noise_removal.py} +25 -24
- darfix/core/noise_removal_type.py +14 -0
- darfix/core/positioners.py +6 -0
- darfix/core/rocking_curves.py +6 -3
- darfix/core/rocking_curves_map.py +1 -1
- darfix/core/{shiftcorrection.py → shift_correction.py} +1 -2
- darfix/core/state_of_operation.py +7 -46
- darfix/core/utils.py +0 -39
- darfix/dtypes.py +1 -9
- darfix/gui/{binningWidget.py → binning_widget.py} +2 -29
- darfix/gui/{blindSourceSeparationWidget.py → blind_source_separation_widget.py} +4 -16
- darfix/gui/{chooseDimensions.py → choose_dimensions.py} +1 -1
- darfix/gui/concatenate_scans.py +4 -4
- darfix/gui/data_selection/{hdf5_data_selection_widgets.py → hdf5_dataset_selection_widget.py} +3 -56
- darfix/gui/data_selection/line_edits.py +54 -8
- darfix/gui/data_selection/scan_selection_widgets.py +24 -11
- darfix/gui/data_selection/utils.py +11 -0
- darfix/gui/data_selection/{WorkingDirSelectionWidget.py → working_dir_selection_widget.py} +15 -14
- darfix/gui/{dimensionsWidget.py → dimensions_widget.py} +1 -1
- darfix/gui/{displayComponentsWidget.py → display_components_widget.py} +1 -1
- darfix/gui/{filterByDimension.py → filter_by_dimension.py} +1 -1
- darfix/gui/{grainplot/dimensionRangeSlider2D.py → grain_plot/dimension_range_slider_2d.py} +2 -2
- darfix/gui/{grainplot/grainPlotWidget.py → grain_plot/grain_plot_widget.py} +1 -1
- darfix/gui/{grainplot/mosaicityWidget.py → grain_plot/mosaicity_widget.py} +21 -23
- darfix/gui/{magnificationWidget.py → magnification_widget.py} +1 -1
- darfix/gui/{noiseremoval → noise_removal}/noise_removal_widget.py +12 -16
- darfix/gui/{noiseremoval → noise_removal}/operation_list_widget.py +2 -2
- darfix/gui/{noiseremoval → noise_removal}/parameters_widget.py +6 -6
- darfix/gui/{PCAWidget.py → pca_widget.py} +2 -4
- darfix/gui/{projectionWidget.py → projection_widget.py} +1 -1
- darfix/gui/rocking_curves/{rockingCurvesPlot.py → rocking_curves_plot.py} +13 -13
- darfix/gui/rocking_curves/{rockingCurvesWidget.py → rocking_curves_widget.py} +10 -18
- darfix/gui/{roiSelectionWidget.py → roi_selection_widget.py} +9 -101
- darfix/gui/{shiftcorrection/shiftCorrectionWidget.py → shift_correction/shift_correction_widget.py} +4 -7
- darfix/gui/utils/data_path_completer.py +7 -7
- darfix/gui/utils/data_path_selection.py +4 -4
- darfix/gui/utils/{rangeSlider.py → range_slider.py} +1 -1
- darfix/gui/{weakBeamWidget.py → weak_beam_widget.py} +13 -28
- darfix/gui/{zSumWidget.py → zsum_widget.py} +1 -2
- darfix/main.py +19 -3
- darfix/processing/rocking_curves.py +12 -13
- darfix/tasks/binning.py +6 -17
- darfix/tasks/blind_source_separation.py +121 -0
- darfix/tasks/blindsourceseparation.py +8 -131
- darfix/tasks/copy.py +0 -2
- darfix/tasks/data_partition.py +39 -0
- darfix/tasks/datapartition.py +8 -50
- darfix/tasks/dimension_definition.py +197 -0
- darfix/tasks/dimensiondefinition.py +8 -197
- darfix/tasks/grain_plot.py +93 -0
- darfix/tasks/grainplot.py +8 -103
- darfix/tasks/hdf5_data_selection.py +5 -11
- darfix/tasks/hdf5_scans_concatenation.py +4 -4
- darfix/tasks/noise_removal.py +88 -0
- darfix/tasks/noiseremoval.py +8 -86
- darfix/tasks/pca.py +1 -3
- darfix/tasks/projection.py +1 -6
- darfix/tasks/rocking_curves.py +10 -5
- darfix/tasks/roi.py +0 -2
- darfix/tasks/shift_correction.py +45 -0
- darfix/tasks/shiftcorrection.py +8 -43
- darfix/tasks/transformation.py +0 -2
- darfix/tasks/weak_beam.py +71 -0
- darfix/tasks/weakbeam.py +8 -67
- darfix/tasks/zsum.py +1 -1
- darfix/tests/conftest.py +1 -1
- darfix/tests/gui/test_data_path_completer.py +4 -4
- darfix/tests/gui/test_dimension_range_slider_2d.py +2 -2
- darfix/tests/gui/test_range_slider_with_spinboxes.py +1 -1
- darfix/tests/orange/test_ewoks.py +13 -9
- darfix/tests/orange/widgets/test_hdf5_data_selection.py +93 -0
- darfix/tests/tasks/test_data_copy.py +0 -2
- darfix/tests/tasks/{test_dimensiondefinition.py → test_dimension_definition.py} +1 -1
- darfix/tests/tasks/test_weak_beam.py +9 -0
- darfix/tests/test_components_matching.py +2 -2
- darfix/tests/test_dataset.py +2 -28
- darfix/tests/test_dimension.py +1 -1
- darfix/tests/test_generate_grain_maps_nxdict.py +4 -5
- darfix/tests/test_image_operations.py +4 -4
- darfix/tests/test_image_registration.py +17 -17
- darfix/tests/test_image_stack.py +2 -13
- darfix/tests/test_mask.py +1 -1
- darfix/tests/test_moments.py +2 -2
- darfix/tests/test_rocking_curves.py +1 -3
- darfix/tests/test_shift.py +7 -7
- darfix/tests/test_workflow.py +4 -4
- darfix/tests/test_zsum.py +3 -6
- {darfix-4.2.0.dist-info → darfix-4.3.0.dist-info}/METADATA +5 -3
- {darfix-4.2.0.dist-info → darfix-4.3.0.dist-info}/RECORD +141 -135
- orangecontrib/darfix/widgets/__init__.py +10 -1
- orangecontrib/darfix/widgets/binning.py +3 -3
- orangecontrib/darfix/widgets/blindsourceseparation.py +4 -6
- orangecontrib/darfix/widgets/concatenateHDF5.py +1 -1
- orangecontrib/darfix/widgets/datacopy.py +1 -1
- orangecontrib/darfix/widgets/datapartition.py +7 -102
- orangecontrib/darfix/widgets/{datasetWidgetBase.py → dataset_widget_base.py} +17 -5
- orangecontrib/darfix/widgets/dimensions.py +6 -6
- orangecontrib/darfix/widgets/grainplot.py +3 -3
- orangecontrib/darfix/widgets/hdf5dataselection.py +34 -14
- orangecontrib/darfix/widgets/metadata.py +2 -2
- orangecontrib/darfix/widgets/noiseremoval.py +4 -4
- orangecontrib/darfix/widgets/{operationWidgetBase.py → operation_widget_base.py} +2 -2
- orangecontrib/darfix/widgets/pca.py +2 -2
- orangecontrib/darfix/widgets/projection.py +2 -2
- orangecontrib/darfix/widgets/rockingcurves.py +5 -2
- orangecontrib/darfix/widgets/roiselection.py +24 -106
- orangecontrib/darfix/widgets/rsmhistogram.py +2 -2
- orangecontrib/darfix/widgets/shiftcorrection.py +3 -3
- orangecontrib/darfix/widgets/transformation.py +4 -4
- orangecontrib/darfix/widgets/weakbeam.py +20 -103
- orangecontrib/darfix/widgets/zsum.py +3 -5
- darfix/gui/dataPartitionWidget.py +0 -167
- darfix/gui/data_selection/DataSelectionBase.py +0 -59
- darfix/tests/tasks/test_datapartition.py +0 -52
- /darfix/core/{componentsMatching.py → components_matching.py} +0 -0
- /darfix/core/{datapathfinder.py → data_path_finder.py} +0 -0
- /darfix/core/{imageRegistration.py → image_registration.py} +0 -0
- /darfix/gui/{grainplot → grain_plot}/__init__.py +0 -0
- /darfix/gui/{grainplot → grain_plot}/_oridist_toolbar_buttons.py +0 -0
- /darfix/gui/{grainplot → grain_plot}/flashlight.py +0 -0
- /darfix/gui/{grainplot → grain_plot}/flashlight_mode_action.py +0 -0
- /darfix/gui/{grainplot → grain_plot}/oridist_toolbar.py +0 -0
- /darfix/gui/{grainplot → grain_plot}/utils.py +0 -0
- /darfix/gui/{metadataWidget.py → metadata_widget.py} +0 -0
- /darfix/gui/{operationProcess.py → parallel/operation_process.py} +0 -0
- /darfix/gui/{operationThread.py → parallel/operation_thread.py} +0 -0
- /darfix/gui/rocking_curves/{fitComboBox.py → fit_combobox.py} +0 -0
- /darfix/gui/{roiLimitsToolbar.py → roi_limits_toolbar.py} +0 -0
- /darfix/gui/{rsmHistogramWidget.py → rsm_histogram_widget.py} +0 -0
- /darfix/gui/{rsmWidget.py → rsm_widget.py} +0 -0
- /darfix/gui/{shiftcorrection → shift_correction}/__init__.py +0 -0
- /darfix/gui/{shiftcorrection/shiftInput.py → shift_correction/shift_input.py} +0 -0
- /darfix/gui/utils/{standardButtonBox.py → standard_buttonbox.py} +0 -0
- /darfix/processing/{imageOperations.py → image_operations.py} +0 -0
- /darfix/tests/{test_datapathfinder.py → test_data_path_finder.py} +0 -0
- {darfix-4.2.0.dist-info → darfix-4.3.0.dist-info}/WHEEL +0 -0
- {darfix-4.2.0.dist-info → darfix-4.3.0.dist-info}/entry_points.txt +0 -0
- {darfix-4.2.0.dist-info → darfix-4.3.0.dist-info}/licenses/LICENSE +0 -0
- {darfix-4.2.0.dist-info → darfix-4.3.0.dist-info}/top_level.txt +0 -0
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from darfix.tasks.blind_source_separation import BlindSourceSeparation
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from darfix.tasks.blind_source_separation import Method
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class BlindSourceSeparationWidgetOW(
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@@ -123,8 +123,6 @@ class BlindSourceSeparationWidgetOW(
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raise dtypes.DatasetTypeError(dataset)
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self._widget._displayComponents(
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dataset=dataset.dataset,
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indices=dataset.indices,
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bg_indices=dataset.bg_indices,
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comp=comp,
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W=W,
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)
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@@ -1,7 +1,7 @@
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1
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from functools import partial
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2
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from ewokscore.missing_data import is_missing_data
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-
from ewoksorange.
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4
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from ewoksorange.gui.owwidgets.threaded import OWEwoksWidgetOneThread
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5
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from silx.gui import qt
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from darfix.gui.concatenate_scans import HDF5ConcatenateWindow
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@@ -1,14 +1,7 @@
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1
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-
import
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from typing import Optional
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1
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from ewoksorange.gui.owwidgets.threaded import OWEwoksWidgetOneThread
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2
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4
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from
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from
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-
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from darfix import dtypes
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8
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from darfix.gui.dataPartitionWidget import DataPartitionWidget
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9
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from darfix.gui.operationThread import OperationThread
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10
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from darfix.gui.utils.message import missing_dataset_msg
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11
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-
from darfix.tasks.datapartition import DataPartition
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3
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+
from darfix.gui.utils.message import show_error_msg
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4
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+
from darfix.tasks.data_partition import DataPartition
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5
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6
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14
7
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class DataPartitionWidgetOW(OWEwoksWidgetOneThread, ewokstaskclass=DataPartition):
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@@ -28,96 +21,8 @@ class DataPartitionWidgetOW(OWEwoksWidgetOneThread, ewokstaskclass=DataPartition
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"filter_top_bin_idx",
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)
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def
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-
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-
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self._widget = DataPartitionWidget(parent=self)
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self.controlArea.layout().addWidget(self._widget)
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-
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# update gui from default input value
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39
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-
bins = self.get_default_input_value("bins", None)
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40
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if bins is not None:
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41
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-
self._widget.setBins(bins)
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-
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-
filter_bottom_bin_idx = self.get_default_input_value(
|
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"filter_bottom_bin_idx", None
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24
|
+
def handleNewSignals(self):
|
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25
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show_error_msg(
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26
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"This widget is legacy and will be removed in 5.0. To not break compatibility with existing workflows in 4.3, the widget is not removed but is now just a pass through that does not modify the dataset."
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45
27
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)
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46
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-
|
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47
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self._widget.setBottomBin(filter_bottom_bin_idx)
|
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48
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-
|
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49
|
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filter_top_bin_idx = self.get_default_input_value("filter_top_bin_idx", None)
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50
|
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if filter_top_bin_idx is not None:
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51
|
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self._widget.setTopBin(filter_top_bin_idx)
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52
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-
|
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53
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# connect signal / slot
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54
|
-
self._widget.sigAbort.connect(self._abort_processing)
|
|
55
|
-
self._widget.sigComputeHistogram.connect(self._computeHistogram)
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56
|
-
self._widget.sigPartitionData.connect(self.execute_ewoks_task)
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57
|
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# keep ewoks default input value up to date.
|
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58
|
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self._widget.sigNbBinsChanged.connect(self._nbBinsHasChanged)
|
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59
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self._widget.sigBottomBinChanged.connect(self._bottomBinHasChanged)
|
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60
|
-
self._widget.sigTopBinChanged.connect(self._topBinHasChanged)
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|
-
|
|
62
|
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def setDataset(self, dataset: Optional[dtypes.Dataset], pop_up=False):
|
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63
|
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if dataset is None:
|
|
64
|
-
return
|
|
65
|
-
if not isinstance(dataset, dtypes.Dataset):
|
|
66
|
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raise dtypes.DatasetTypeError(dataset)
|
|
67
|
-
self.set_dynamic_input("dataset", dataset)
|
|
68
|
-
|
|
69
|
-
self._widget.setDataset(dataset)
|
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70
|
-
if pop_up:
|
|
71
|
-
self.open()
|
|
72
|
-
|
|
73
|
-
def handleNewSignals(self) -> None:
|
|
74
|
-
"""
|
|
75
|
-
Today the DataPartitionWidget is not processing automatically a dataset when it receive it.
|
|
76
|
-
It wait the user to press 'filter' in this case to process and move to the next widget.
|
|
77
|
-
"""
|
|
78
|
-
dataset = self.get_task_input_value("dataset", MISSING_DATA)
|
|
79
|
-
if dataset not in (MISSING_DATA, None):
|
|
80
|
-
self.setDataset(dataset=dataset, pop_up=True)
|
|
81
|
-
# note: we only want to execute the ewows task when 'ok' is pressed and not when a new dataset is set
|
|
82
|
-
# return super().handleNewSignals() do not call to make sure the processing is not triggered
|
|
83
|
-
|
|
84
|
-
def _computeHistogram(self):
|
|
85
|
-
"""
|
|
86
|
-
compute the histogram and display it.
|
|
87
|
-
It will help user select the bottom and top bins values.
|
|
88
|
-
"""
|
|
89
|
-
dataset = self.get_task_input_value("dataset", MISSING_DATA)
|
|
90
|
-
if dataset in (None, MISSING_DATA):
|
|
91
|
-
missing_dataset_msg()
|
|
92
|
-
return
|
|
93
|
-
if not isinstance(dataset, dtypes.Dataset):
|
|
94
|
-
raise dtypes.DatasetTypeError(dataset)
|
|
95
|
-
self._threadComputeHistogram = OperationThread(
|
|
96
|
-
self, dataset.dataset.compute_frames_intensity
|
|
97
|
-
)
|
|
98
|
-
self._widget.setProcessingButtonsEnabled(False)
|
|
99
|
-
self._threadComputeHistogram.finished.connect(
|
|
100
|
-
self._widget._showHistogramCallback
|
|
101
|
-
)
|
|
102
|
-
self._threadComputeHistogram.finished.connect(
|
|
103
|
-
functools.partial(
|
|
104
|
-
self._threadComputeHistogram.finished.disconnect,
|
|
105
|
-
self._widget._showHistogramCallback,
|
|
106
|
-
)
|
|
107
|
-
)
|
|
108
|
-
self._threadComputeHistogram.start()
|
|
109
|
-
|
|
110
|
-
def _abort_processing(self):
|
|
111
|
-
"stop all processing associated to the task or the widget"
|
|
112
|
-
self.cancel_running_task()
|
|
113
|
-
if self._threadComputeHistogram and self._threadComputeHistogram.isRunning():
|
|
114
|
-
self._threadComputeHistogram.quit()
|
|
115
|
-
|
|
116
|
-
def _nbBinsHasChanged(self, nb_bins):
|
|
117
|
-
self.set_default_input("bins", nb_bins)
|
|
118
|
-
|
|
119
|
-
def _bottomBinHasChanged(self, value):
|
|
120
|
-
self.set_default_input("filter_bottom_bin_idx", value)
|
|
121
|
-
|
|
122
|
-
def _topBinHasChanged(self, value):
|
|
123
|
-
self.set_default_input("filter_top_bin_idx", value)
|
|
28
|
+
super().handleNewSignals()
|