dalla-data-processing 0.0.1__py3-none-any.whl

dalla/deduplication/onion/src/version.c

@@ -0,0 +1,17 @@
+/*********************************************************************
+ * Copyright (c) 2011-2016 Jan Pomikalek, Milos Jakubicek            *
+ * All rights reserved.                                              *
+ *                                                                   *
+ * This software is licensed as described in the file COPYING, which *
+ * you should have received as part of this distribution.            *
+ *********************************************************************/
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include "version.h"
+
+void print_version(const char* progname) {
+    printf("%s: onion v%s\n\n", progname, VERSION);
+    printf("Copyright (c) 2011-2020 Lexical Computing Limited and Lexical Computing CZ s.r.o.\n");
+}

dalla/deduplication/onion/src/version.h

@@ -0,0 +1,10 @@
+/*********************************************************************
+ * Copyright (c) 2011-2016 Jan Pomikalek, Milos Jakubicek            *
+ * All rights reserved.                                              *
+ *                                                                   *
+ * This software is licensed as described in the file COPYING, which *
+ * you should have received as part of this distribution.            *
+ *********************************************************************/
+
+#define VERSION "1.4"
+void print_version(const char* progname);

dalla/deduplication/onion/src_sc/Makefile

@@ -0,0 +1,22 @@
+include ../Makefile.config
+
+CC=g++
+CFLAGS=-Wall -O3
+
+OBJS=version.o buzhash.o
+TARGETS=hashgen hashdup onion
+all: $(TARGETS)
+
+$(TARGETS): $(OBJS)
+
+%.o: %.c %.h
+	$(CC) $(CFLAGS) -c $< 
+
+%: %.c
+	$(CC) $(CFLAGS) $^ $(LIBS) -o $@
+
+install: $(TARGETS)
+	mkdir -p $(INSTALL_BIN) && install -m 755 $(TARGETS) $(INSTALL_BIN)
+
+clean:
+	rm -f $(OBJS) $(TARGETS)

dalla/deduplication/onion/src_sc/Makefile.g

@@ -0,0 +1,23 @@
+include ../Makefile.config
+
+CC=g++
+#CFLAGS=-Wall -O3
+CFLAGS=-Wall -g
+
+OBJS=version.o buzhash.o
+TARGETS=hashgen hashdup onion
+all: $(TARGETS)
+
+$(TARGETS): $(OBJS)
+
+%.o: %.c %.h
+	$(CC) $(CFLAGS) -c $< 
+
+%: %.c
+	$(CC) $(CFLAGS) $^ $(LIBS) -o $@
+
+install: $(TARGETS)
+	mkdir -p $(INSTALL_BIN) && install -m 755 $(TARGETS) $(INSTALL_BIN)
+
+clean:
+	rm -f $(OBJS) $(TARGETS)

dalla/deduplication/onion/src_sc/buzhash.c

@@ -0,0 +1,325 @@
+/*********************************************************************
+ * Copyright (c) 2011-2015 Jan Pomikalek                             *
+ * All rights reserved.                                              *
+ *                                                                   *
+ * This software is licensed as described in the file COPYING, which *
+ * you should have received as part of this distribution.            *
+ *********************************************************************/
+
+#include "buzhash.h"
+#include <string.h>
+#include <stdlib.h>
+
+const hash_t CHAR2LONG[255] = {
+    12658332951230890439ul,
+    16607337219466274820ul,
+    4897781435750669512ul,
+    1863954398247708433ul,
+    6041299601906237138ul,
+    3602934247356726349ul,
+    13927570682514441143ul,
+    11920701378039577834ul,
+    14629533900929623503ul,
+    16546862913458629335ul,
+    10685855460932754325ul,
+    15186106020611570871ul,
+    8131473594228677807ul,
+    9287569521752445451ul,
+    5624316205208212365ul,
+    10693223548395698341ul,
+    10578473704599778022ul,
+    16693921798782755893ul,
+    15124492184888274523ul,
+    1235529881146962610ul,
+    14843219789508576687ul,
+    15526012670070475388ul,
+    6463116610490435782ul,
+    15104307767477900194ul,
+    8484741665705462025ul,
+    8100868536101218192ul,
+    3395269876321120613ul,
+    8589680476807032865ul,
+    7621819336684948355ul,
+    14153065448097834589ul,
+    6732762317790231782ul,
+    13018363043978374122ul,
+    6215216690161075437ul,
+    9357943660640904950ul,
+    12116224851753945911ul,
+    13636661669728066501ul,
+    7484247892091601413ul,
+    8512193125891820287ul,
+    10461835854496665155ul,
+    16797036920317134766ul,
+    1313270971513831546ul,
+    742840173802188917ul,
+    1249430170856643161ul,
+    17179028999057074571ul,
+    6378210156955744140ul,
+    793680677819467304ul,
+    4263415984887072454ul,
+    7875662396850393478ul,
+    17050561532048146107ul,
+    1435098142595853720ul,
+    8580942225888237636ul,
+    13308656650323976644ul,
+    16630067181906003651ul,
+    12116795942522001627ul,
+    9892291673171748547ul,
+    11660673438127243284ul,
+    6026050291617469826ul,
+    10478522635079777192ul,
+    12138158317934008218ul,
+    3518644136578100667ul,
+    4950215611630576830ul,
+    15769242181285477405ul,
+    7950690203065752077ul,
+    319974224259159447ul,
+    9604177767109474443ul,
+    2499971183666009670ul,
+    3389512945436469180ul,
+    13643083464485449791ul,
+    7197237438818751483ul,
+    11151212581995191915ul,
+    17495196072216154799ul,
+    6770497232845758508ul,
+    10987981514044724191ul,
+    14707120191905416074ul,
+    1769092362238593010ul,
+    9329650998411009452ul,
+    14719126903328637772ul,
+    16952770464905740286ul,
+    9674713352706546441ul,
+    6649376341374010415ul,
+    13209384319143003802ul,
+    15927169943220646170ul,
+    16897589646525214220ul,
+    3262252579774962994ul,
+    12644188031911778084ul,
+    12242729612781990566ul,
+    10411593575032306840ul,
+    6901591497302664456ul,
+    16282753866514979972ul,
+    1656537748780076590ul,
+    16482447327676653424ul,
+    15257560081058078415ul,
+    2959473391892618753ul,
+    6837204821782891114ul,
+    10938562237399133186ul,
+    16857781777840528196ul,
+    8483325299592247627ul,
+    8376541859638180551ul,
+    2504977066327782390ul,
+    12231409223811250404ul,
+    4744310199064570243ul,
+    17936677873798959622ul,
+    7126990633455442871ul,
+    2079219814712678870ul,
+    5067179041865164597ul,
+    2311488369720591961ul,
+    1725854410047761352ul,
+    7355938747639265690ul,
+    15490596914355917847ul,
+    2283460595124192686ul,
+    6878856348493276219ul,
+    9152647736939983958ul,
+    1662432522495537695ul,
+    11306127178924536002ul,
+    9272318044070549747ul,
+    7145744474881723964ul,
+    13448381548771200536ul,
+    16160887140379377718ul,
+    16369357319459660843ul,
+    5476117262347077406ul,
+    16602075379238506563ul,
+    11456607228896734049ul,
+    6465411526782391145ul,
+    8155612729101736593ul,
+    1740403063688953650ul,
+    4466509242016709213ul,
+    18112502299939680520ul,
+    16974090059556845575ul,
+    12326512096507303015ul,
+    15376655537080530798ul,
+    12498441914565269305ul,
+    6036826437421754258ul,
+    7912527257991934972ul,
+    16620739722007677741ul,
+    8733477150731820655ul,
+    16564684276929490022ul,
+    9409261669616170022ul,
+    8387885649776441101ul,
+    4427301691848253832ul,
+    17640389513959398145ul,
+    11987577927023442578ul,
+    1358867256273478740ul,
+    14172638869615591470ul,
+    4669134809929205329ul,
+    9146890779639199412ul,
+    2448139160410716046ul,
+    14539456923687813097ul,
+    15701779011641704372ul,
+    12184110908386419117ul,
+    6182072944631238310ul,
+    6068503614243670324ul,
+    17486237705261861510ul,
+    8141926135459860042ul,
+    11247558917664640122ul,
+    15966973352605162329ul,
+    9274584296089522436ul,
+    16106837601580129961ul,
+    5565067011055473713ul,
+    9018591362895332601ul,
+    17429669259725580644ul,
+    5862130260298638241ul,
+    10804107644379464482ul,
+    14590678293851680311ul,
+    7586397638435564357ul,
+    5024282990565981028ul,
+    17710866669113912150ul,
+    10607302159042519593ul,
+    10224690187282473862ul,
+    12691341730791771243ul,
+    446919220230245087ul,
+    11928822690215012312ul,
+    14695552131553031715ul,
+    9373710656266261295ul,
+    10535666776941439244ul,
+    4764286487123496201ul,
+    12081558227095427560ul,
+    14657526787837780677ul,
+    4854775944749701021ul,
+    18014893051074447624ul,
+    5961551484053396826ul,
+    7007393494224833114ul,
+    1918625258470397717ul,
+    2249596653018019968ul,
+    15376752853428300944ul,
+    15661589396388907215ul,
+    17959491169395034186ul,
+    7412669116831624121ul,
+    16613322186307011607ul,
+    1168394068192978862ul,
+    13541384245715877822ul,
+    17842264847294623193ul,
+    8656129051250713732ul,
+    6600363660893585591ul,
+    10437456264051898071ul,
+    6483876479559582910ul,
+    2351460095187333222ul,
+    17709647483310915437ul,
+    4687819186773626811ul,
+    12859142186029646747ul,
+    14196439022719216916ul,
+    10831194418958921226ul,
+    9958754500157295475ul,
+    2812703802823563549ul,
+    364639487745161427ul,
+    18071223067394944401ul,
+    11148005916176784196ul,
+    10887057658503987840ul,
+    7239832157577921295ul,
+    6274798767279704963ul,
+    9654930315473449062ul,
+    11342083202968693359ul,
+    8060885109403789727ul,
+    532804797012507628ul,
+    4259820420986796757ul,
+    3591121934050292837ul,
+    3739649723128072566ul,
+    11338759925899470208ul,
+    17557031182161531657ul,
+    1328316363081986551ul,
+    905104119772647733ul,
+    16162805969666123858ul,
+    13351191969939227039ul,
+    11181921000405417530ul,
+    1257129276560696939ul,
+    8049492553042309720ul,
+    8867122601488545729ul,
+    8169023185794623188ul,
+    14027174324336484013ul,
+    3026556086188399794ul,
+    7137339202398299406ul,
+    15636400854018083176ul,
+    1912758983363371197ul,
+    12934014134659659938ul,
+    6432162334519755563ul,
+    11890239098696368321ul,
+    465021739668949123ul,
+    3571688800220472097ul,
+    17356096479830501074ul,
+    17244551474859817129ul,
+    16858016682994011520ul,
+    11599911656842386375ul,
+    1384801604554958238ul,
+    10350053496655489375ul,
+    2028044935420165668ul,
+    9321839731809955516ul,
+    3800717409646038380ul,
+    508616612214119935ul,
+    14489270436014461891ul,
+    11373150082561320490ul,
+    8855221204049336307ul,
+    11920562817555372746ul,
+    17464569634060446109ul,
+    146583913832133545ul,
+    11454565731520647642ul,
+    14516679283835536061ul,
+};
+
+// 64-bit left circular shift
+hash_t rotate_left(hash_t value, int shift) {
+    return (value << shift) | (value >> (64 - shift));
+}
+
+hash_t hash_string(char* string) {
+    hash_t hash = 0;
+    int string_len = strlen(string);
+    int i;
+    for (i=0; i<string_len; i++) {
+        hash ^= CHAR2LONG[(unsigned char) string[i]];
+        hash = rotate_left(hash, 1);
+    }
+    return hash;
+}
+
+void buzhash_init_buffer(buzhash_buffer_t* buffer, int size) {
+    buffer->size = size;
+    buffer->elem_count = 0;
+    buffer->last_index = size - 1;
+    buffer->hash = 0;
+    buffer->elems = (hash_t*) malloc(size * sizeof(hash_t));
+}
+
+void buzhash_clear_buffer(buzhash_buffer_t* buffer) {
+    buffer->elem_count = 0;
+    buffer->last_index = buffer->size - 1;
+    buffer->hash = 0;
+}
+
+void buzhash_free_buffer(buzhash_buffer_t* buffer) {
+    free(buffer->elems);
+}
+
+int buzhash_is_full_buffer(buzhash_buffer_t* buffer) {
+    return (buffer->elem_count == buffer->size);
+}
+
+hash_t buzhash(char* string, buzhash_buffer_t* buffer) {
+    hash_t string_hash = hash_string(string);
+    if (buffer->elem_count < buffer->size) {
+        buffer->last_index = (buffer->last_index + 1) % buffer->size;
+        buffer->hash = rotate_left(buffer->hash, 1) ^ string_hash;
+        buffer->elems[buffer->last_index] = string_hash;
+        buffer->elem_count++;
+    }
+    else {
+        int fst_index = (buffer->last_index + 1) % buffer->size;
+        buffer->hash = rotate_left(buffer->hash, 1) ^ rotate_left(
+                buffer->elems[fst_index], buffer->size) ^ string_hash;
+        buffer->last_index = fst_index;
+        buffer->elems[buffer->last_index] = string_hash;
+    }
+    return buffer->hash;
+}

dalla/deduplication/onion/src_sc/buzhash.h

@@ -0,0 +1,30 @@
+/*********************************************************************
+ * Copyright (c) 2011-2015 Jan Pomikalek                             *
+ * All rights reserved.                                              *
+ *                                                                   *
+ * This software is licensed as described in the file COPYING, which *
+ * you should have received as part of this distribution.            *
+ *********************************************************************/
+
+#ifndef BUZHASH_H
+#define BUZHASH_H
+#define BUZHASH_MAX 18446744073709551615ul
+
+#include <stdint.h>
+
+typedef uint64_t hash_t;
+typedef struct {
+    int size;
+    hash_t *elems;
+    int elem_count;     // current number of elements in the buffer
+    int last_index;     // the index of the last element (buffer is circular)
+    hash_t hash;        // current hash value
+} buzhash_buffer_t;
+
+hash_t hash_string(char* string);
+void buzhash_init_buffer(buzhash_buffer_t* buffer, int size);
+void buzhash_clear_buffer(buzhash_buffer_t* buffer);
+void buzhash_free_buffer(buzhash_buffer_t* buffer);
+int buzhash_is_full_buffer(buzhash_buffer_t* buffer);
+hash_t buzhash(char* string, buzhash_buffer_t* buffer);
+#endif

dalla/deduplication/onion/src_sc/hashdup.c

@@ -0,0 +1,172 @@
+/*********************************************************************
+ * Copyright (c) 2011-2015 Jan Pomikalek                             *
+ * All rights reserved.                                              *
+ *                                                                   *
+ * This software is licensed as described in the file COPYING, which *
+ * you should have received as part of this distribution.            *
+ *********************************************************************/
+
+#include <errno.h>
+#include <fcntl.h>
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <time.h>
+#include <unistd.h>
+#include <sys/mman.h>
+#include <sys/time.h>
+#include <sys/stat.h>
+#include <sys/types.h>
+#include "buzhash.h"
+#include "version.h"
+
+#define OUTPUT_FILE "duphashes"
+
+// options
+char *Output_file = OUTPUT_FILE;
+int Quiet = 0;
+FILE* Input;
+long int Input_size;
+
+void print_usage(FILE *stream) {
+    fprintf(stream, "\
+Usage: hashdup [OPTIONS] FILE [FILE...]\n\
+Identify duplicate hashes.\n\
+\n\
+ -o FILE   output file (default: %s)\n\
+ -q        quiet; suppress all output except for errors\n\
+\n\
+ -V        print version information and exit\n\
+ -h        display this help and exit\n\
+\n\
+Project home page: <http://code.google.com/p/onion/>\n",
+        OUTPUT_FILE);
+}
+
+// taken from http://cs.wikipedia.org/wiki/Quicksort
+void quicksort(hash_t array[], long int left_begin, long int right_begin) {
+    hash_t pm = array[(left_begin + right_begin) / 2];
+    long int left_index, right_index;
+    left_index = left_begin;
+    right_index = right_begin;
+    do {
+        while (array[left_index] < pm)
+            left_index++;
+        while (array[right_index] > pm)
+            right_index--;
+        if (left_index <= right_index) {
+            hash_t value = array[left_index];
+            array[left_index] = array[right_index];
+            array[right_index] = value;
+            left_index++;
+            right_index--;
+        }
+    } while (left_index < right_index);
+    if (right_index > left_begin)
+        quicksort(array, left_begin, right_index);
+    if (left_index < right_begin)
+        quicksort(array, left_index, right_begin);
+}
+
+void print_progress(int processed_files, int total_files) {
+    time_t now;
+    time(&now);
+    fprintf(stderr, "[%.24s] hashdup: %i / %i files processed\n", ctime(&now),
+            processed_files, total_files);
+}
+
+int main(int argc, char **argv) {
+    // get options
+    int c;
+    while ((c = getopt(argc, argv, "o:qVh")) != -1) {
+        errno = 0;
+        switch (c) {
+            case 'o':
+                Output_file = optarg;
+                break;
+            case 'q':
+                Quiet = 1;
+                break;
+            case 'V':
+                print_version("hashdup");
+                return 0;
+            case 'h':
+                print_usage(stdout);
+                return 0;
+            case '?':
+                print_usage(stderr);
+                return 1;
+        }
+    }
+
+    if (optind >= argc) {
+        fprintf(stderr, "No input.\n");
+        print_usage(stderr);
+        return 1;
+    }
+
+    // output file
+    errno = 0;
+    FILE* output_fp = fopen(Output_file, "w");
+    if (errno != 0) {
+        fprintf(stderr, "Unable to open %s for writing.\n", Output_file);
+        return 1;
+    }
+
+    int input_files_count = argc - optind;
+
+    // for all input files
+    int i;
+    for (i=optind; i<argc; i++) {
+        // open file
+        char* filename = argv[i];
+        int input_fd = open(filename, O_RDONLY);
+        if (input_fd == -1) {
+            fprintf(stderr, "Unable to open %s for reading.\n", filename);
+            return 1;
+        }
+
+        // determine file size
+        unsigned long int file_size = lseek(input_fd, 0L, SEEK_END);
+        lseek(input_fd, 0L, SEEK_SET);
+
+        // map hashes into memory
+        hash_t* hashes = NULL;
+        hashes = (hash_t*) mmap(hashes, file_size, PROT_READ | PROT_WRITE,
+                MAP_PRIVATE, input_fd, 0);
+
+        // sort hashes
+        unsigned long int hash_count = file_size / sizeof(hash_t);
+        quicksort(hashes, 0, hash_count-1);
+
+        // send duplicate hashes to the output
+        int written = 0;
+        hash_t prev_hash = hashes[0];
+        hash_t hash;
+        unsigned long int j;
+        for (j=1; j<hash_count; j++) {
+            hash = hashes[j];
+            if (hash == prev_hash) {
+                if (!written) {
+                    fwrite(&hash, sizeof(hash), 1, output_fp);
+                    written = 1;
+                }
+            }
+            else {
+                written = 0;
+            }
+            prev_hash = hash;
+        }
+
+        munmap(hashes, file_size);
+        close(input_fd);
+
+        // print progress information
+        if (!Quiet)
+            print_progress(i - optind + 1, input_files_count);
+    }
+
+    fclose(output_fp);
+
+    return 0;
+}