dairy-data-tools 0.2.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -0,0 +1,119 @@
1
+ Metadata-Version: 2.5
2
+ Name: dairy-data-tools
3
+ Version: 0.2.0
4
+ Summary: Read a dairy farm's DairyComp and EZfeed exports: the herd, each pen and cow, pen cows joined to pen feed, a weekly or visit review, and a ration change with the season taken out.
5
+ Project-URL: Homepage, https://github.com/padge01/dairy-data-tools
6
+ Project-URL: Issues, https://github.com/padge01/dairy-data-tools/issues
7
+ Author: Pádraig Lucey
8
+ License-Expression: Apache-2.0
9
+ License-File: LICENSE
10
+ License-File: LICENSE-skills.md
11
+ License-File: NOTICE
12
+ Keywords: DairyComp,ECM,EZfeed,IOFC,dairy,feed efficiency,herd management,nutrition,veterinary
13
+ Classifier: Intended Audience :: Science/Research
14
+ Classifier: Operating System :: OS Independent
15
+ Classifier: Programming Language :: Python :: 3
16
+ Classifier: Topic :: Scientific/Engineering
17
+ Requires-Python: >=3.10
18
+ Description-Content-Type: text/markdown
19
+
20
+ # Dairy Data Tools
21
+
22
+ Free tools for dairy nutritionists and their AI agents. Give your agent a farm's own **DairyComp** and **EZfeed**
23
+ exports and ask about a pen: how it's doing, what a ration change did, and whether it's just the season. The numbers
24
+ come from small, tested scripts, not from the AI's guesswork.
25
+
26
+ By Pádraig Lucey, MVB, MPVM, Ph.D. ([Dairy Data Science](https://dairydatascience.com)).
27
+
28
+ ## Get it
29
+
30
+ **In the Claude app** (desktop or claude.ai, a paid plan with code execution on): Customize > Plugins > Add marketplace >
31
+ `padge01/dairy-data-tools`, then Add **Dairy Data Tools**. Attach the farm's export files to a chat and ask.
32
+
33
+ **In Claude Code:**
34
+
35
+ ```bash
36
+ claude plugin marketplace add padge01/dairy-data-tools
37
+ ```
38
+
39
+ ```bash
40
+ claude plugin install dairy-data-tools@dairy-data-tools
41
+ ```
42
+
43
+ **In other agents** (Codex, Cursor, Gemini CLI and others that read Agent Skills):
44
+
45
+ ```bash
46
+ npx skills add padge01/dairy-data-tools
47
+ ```
48
+
49
+ **In Python, without an agent** (Python 3.10 or later; nothing else to install):
50
+
51
+ ```bash
52
+ pip install dairy-data-tools
53
+ ```
54
+
55
+ ```bash
56
+ dairy-data-tools pen --folder "Farm Exports" --pen 21
57
+ ```
58
+
59
+ Every question has a command: `dairy-data-tools --help` lists them. The ration change is `dairy-ration-change`.
60
+
61
+ ## What's in it
62
+
63
+ Ask in plain words; the right skill picks itself. No commands to learn.
64
+
65
+ | Skill | Ask it | What it does |
66
+ | --- | --- | --- |
67
+ | dairycomp-exports | "How do I get my cow list out of DairyComp?" "Write me a list of fresh cows in pen 1." "Which of these items shouldn't I use?" | The reports to save for this farm; DairyComp commands from plain English, checked against the farm's own items (SHOW, never LIST, which prints); what each item is |
68
+ | ezfeed-exports | "Which EZfeed reports do you need?" | The reports to save and how they're read |
69
+ | herd-explorer | "How is pen 21 doing?" "What happened to cow 1100?" | The herd, every pen, one pen, one cow: milk and ECM as a spread, events, lactations |
70
+ | pen-feed | "What's pen 21's feed efficiency and IOFC?" "Is the feed loaded as called for?" | Each pen's cows joined to its feed: intake per cow, ECM per lb DM, cost per cwt, IOFC, NASEM's predicted intake; loading accuracy, refusals, consistency |
71
+ | weekly-review | "Get me ready for Thursday's visit." "How are the fresh cows doing?" | Fresh cows, components and MUN, udder health, reproduction, who left, the pens' feed, and actions for the next visit |
72
+ | ration-change | "Did pen 21's ration change work, or is it the season?" | The week before against the latest week, with the same weeks last year or another pen taken out |
73
+ | balance-ration | "Balance pen 21's ration" | The free Dairy Ration Lab when it's connected; this kit never makes up a ration |
74
+
75
+ Plain Python, checked number for number against the author's earlier R version: every count says what it's out of,
76
+ milk is shown as a spread, and the farm is compared with itself, never with published targets.
77
+
78
+ **A sample herd** (`sample-herd/`): a made-up California dairy's exports, to try every skill before using a real farm's.
79
+
80
+ **Its neighbours**, separate tools from the same place: **BESTPRED** (USDA's best prediction of 305-day and
81
+ mature-equivalent milk; in this marketplace, and at `https://bestpred.dairydatascience.com/mcp`) and the **Dairy Ration
82
+ Lab** (a free ration balancer).
83
+
84
+ ## What it does with your files
85
+
86
+ - The scripts read the export files where they are. They change nothing, keep nothing, and send nothing over the
87
+ internet. They use Python's standard library only.
88
+ - In Claude's chat the files you attach and the scripts run in Claude's own code sandbox. What the agent reads goes to
89
+ the AI company as part of the conversation, as anything you attach does, unless you run a model on your own computer.
90
+ - Event remarks, protocols and technician names are left out of what the scripts report, because they are free text
91
+ typed on the farm and could contain anything, including instructions aimed at an agent.
92
+ - Nothing reads DairyComp's own files or backups, and no figure DairyComp calculates for itself (such as 305-day or
93
+ mature-equivalent milk) is used: the kit works from raw records.
94
+
95
+ ## Good to know
96
+
97
+ - Weights are in pounds. Pens are compared with themselves and with the farm's other pens, never with published
98
+ targets.
99
+ - It's a teaching and planning tool, not veterinary or nutrition advice: check anything before it changes what cows are
100
+ fed.
101
+ - DairyComp 305 and EZfeed are Valley Ag Software's products; this project isn't affiliated with them.
102
+
103
+ ## Cite it
104
+
105
+ If it helps your work, please cite it: GitHub's "Cite this repository" button gives the reference (`CITATION.cff`).
106
+
107
+ ## Licence
108
+
109
+ Code under Apache-2.0 (`LICENSE`); the skills' text under CC BY 4.0 (`LICENSE-skills.md`). Questions and fixes:
110
+ [issues](https://github.com/padge01/dairy-data-tools/issues).
111
+
112
+ ## Working on it
113
+
114
+ - `plugins/dairy-data-tools/`: the plugin people install (skills, sample herd, README, licences).
115
+ - `tools/dairy.py`, `tools/dairytools/` and the ration-change scripts in `tools/`: the one copy of the code;
116
+ `python tools/sync_scripts.py` copies it into each skill and writes this README. `pyproject.toml` builds the same
117
+ code as the `dairy-data-tools` package on PyPI.
118
+ - `tools/make_sample_herd.py`: writes the sample herd (fixed seeds, same files every run).
119
+ - `tests/`: `python -m pytest -q tests` (made-up files with known answers, the sample herd, the directory's file limits).
@@ -0,0 +1,23 @@
1
+ dairytools/__init__.py,sha256=n-nNaYs9hZ_vTjn4hDr05-_DuUl72CnncyEtgM_CXuw,528
2
+ dairytools/cards.py,sha256=NaFMnPnT_3_IYjZ2BNREEZXDaw8pObvSXlwmI1PdiYA,19772
3
+ dairytools/cli.py,sha256=5rqCuzvqSJHT27cGcyAgRsPk_4_ii23iLGpMCbu4iyU,12806
4
+ dairytools/commands.py,sha256=5spnhrMycwp_ovwF4P_XF1KYWyLuzUYNpnAK_jMFp2o,9160
5
+ dairytools/cowcard.py,sha256=2BNLKCILLLui5GcNxtdomjG91_WK_-1nFAr7vBp-olA,9896
6
+ dairytools/explorer.py,sha256=JfIa0CLMxKlLc8mf5j97tdR6b6aqYLkLlOw0Gjd8Q7Y,10117
7
+ dairytools/feeding.py,sha256=vHCcG2M9TcD_LZ6aetA9xyguztgUZAKEcWehRyn05S8,15717
8
+ dairytools/herd.py,sha256=332fPLA9tMxq2OtQ2juo8elD2qCxommkMKcwEuiVQG8,21749
9
+ dairytools/io.py,sha256=KG1C6bpLH2hXj7wowRoLQL18vSQWh4G7zdnJZvOzryE,16738
10
+ dairytools/reference.py,sha256=mffuLT-Q3h-NmB9Squl0I8RbaAEOf5Hj93SSvrnU5kQ,10724
11
+ dairytools/stats.py,sha256=lux7TL0MbPL23StDNsSquSXefCeUUAncVuDbD5tDT30,1837
12
+ dairytools/weekly.py,sha256=hyLSNcZDrRZt7CMQ96fc_-cP6mEVW3qsZq7nRBOAtnQ,16726
13
+ dairytools/weeklycard.py,sha256=cuX7IfpDBSZLM49wKKDZk-m2cNBwZqO3S3B5rFS2dBM,16720
14
+ dairytools/dairyread.py,sha256=PrkgxzXWk7WXu551973G0bdewtnIcjuiumbQ9QgkPLA,13105
15
+ dairytools/pen_milk.py,sha256=7HqCAe8YUF94I637Frggx2Dx9s4GVuwyVxhov_jEoDw,3724
16
+ dairytools/ration_change.py,sha256=SxlYtljoCt9v6N3odErvJiybUVqsCATRh-32qU1f_oQ,12519
17
+ dairy_data_tools-0.2.0.dist-info/METADATA,sha256=XWc5seIffOTH_T7as-tG1Q0iEijYwm-p11iuogYeInc,6306
18
+ dairy_data_tools-0.2.0.dist-info/WHEEL,sha256=W3fkpkm7-wf9vBI5Z-7s0eWkeM-spu78I8Neb98DeEg,87
19
+ dairy_data_tools-0.2.0.dist-info/entry_points.txt,sha256=-909ytBJ8MKv4eOpD6dqBjGElYyliswPLs8u6JxJpRE,151
20
+ dairy_data_tools-0.2.0.dist-info/licenses/LICENSE,sha256=z8d0m5b2O9McPEK1xHG_dWgUBT6EfBDz6wA0F7xSPTA,11358
21
+ dairy_data_tools-0.2.0.dist-info/licenses/LICENSE-skills.md,sha256=dXLLLlGYfuMw9D19fkZPQK7AyWqhPErNU3DFlqsqoXQ,473
22
+ dairy_data_tools-0.2.0.dist-info/licenses/NOTICE,sha256=JPHAfxIJgb_-iVD8O4jAiKqfnwRDMZJbR2oUw9dKBww,1033
23
+ dairy_data_tools-0.2.0.dist-info/RECORD,,
@@ -0,0 +1,4 @@
1
+ Wheel-Version: 1.0
2
+ Generator: hatchling 1.32.4
3
+ Root-Is-Purelib: true
4
+ Tag: py3-none-any
@@ -0,0 +1,4 @@
1
+ [console_scripts]
2
+ dairy-data-tools = dairytools.cli:main
3
+ dairy-pen-milk = dairytools.pen_milk:main
4
+ dairy-ration-change = dairytools.ration_change:main
@@ -0,0 +1,202 @@
1
+
2
+ Apache License
3
+ Version 2.0, January 2004
4
+ http://www.apache.org/licenses/
5
+
6
+ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
7
+
8
+ 1. Definitions.
9
+
10
+ "License" shall mean the terms and conditions for use, reproduction,
11
+ and distribution as defined by Sections 1 through 9 of this document.
12
+
13
+ "Licensor" shall mean the copyright owner or entity authorized by
14
+ the copyright owner that is granting the License.
15
+
16
+ "Legal Entity" shall mean the union of the acting entity and all
17
+ other entities that control, are controlled by, or are under common
18
+ control with that entity. For the purposes of this definition,
19
+ "control" means (i) the power, direct or indirect, to cause the
20
+ direction or management of such entity, whether by contract or
21
+ otherwise, or (ii) ownership of fifty percent (50%) or more of the
22
+ outstanding shares, or (iii) beneficial ownership of such entity.
23
+
24
+ "You" (or "Your") shall mean an individual or Legal Entity
25
+ exercising permissions granted by this License.
26
+
27
+ "Source" form shall mean the preferred form for making modifications,
28
+ including but not limited to software source code, documentation
29
+ source, and configuration files.
30
+
31
+ "Object" form shall mean any form resulting from mechanical
32
+ transformation or translation of a Source form, including but
33
+ not limited to compiled object code, generated documentation,
34
+ and conversions to other media types.
35
+
36
+ "Work" shall mean the work of authorship, whether in Source or
37
+ Object form, made available under the License, as indicated by a
38
+ copyright notice that is included in or attached to the work
39
+ (an example is provided in the Appendix below).
40
+
41
+ "Derivative Works" shall mean any work, whether in Source or Object
42
+ form, that is based on (or derived from) the Work and for which the
43
+ editorial revisions, annotations, elaborations, or other modifications
44
+ represent, as a whole, an original work of authorship. For the purposes
45
+ of this License, Derivative Works shall not include works that remain
46
+ separable from, or merely link (or bind by name) to the interfaces of,
47
+ the Work and Derivative Works thereof.
48
+
49
+ "Contribution" shall mean any work of authorship, including
50
+ the original version of the Work and any modifications or additions
51
+ to that Work or Derivative Works thereof, that is intentionally
52
+ submitted to Licensor for inclusion in the Work by the copyright owner
53
+ or by an individual or Legal Entity authorized to submit on behalf of
54
+ the copyright owner. For the purposes of this definition, "submitted"
55
+ means any form of electronic, verbal, or written communication sent
56
+ to the Licensor or its representatives, including but not limited to
57
+ communication on electronic mailing lists, source code control systems,
58
+ and issue tracking systems that are managed by, or on behalf of, the
59
+ Licensor for the purpose of discussing and improving the Work, but
60
+ excluding communication that is conspicuously marked or otherwise
61
+ designated in writing by the copyright owner as "Not a Contribution."
62
+
63
+ "Contributor" shall mean Licensor and any individual or Legal Entity
64
+ on behalf of whom a Contribution has been received by Licensor and
65
+ subsequently incorporated within the Work.
66
+
67
+ 2. Grant of Copyright License. Subject to the terms and conditions of
68
+ this License, each Contributor hereby grants to You a perpetual,
69
+ worldwide, non-exclusive, no-charge, royalty-free, irrevocable
70
+ copyright license to reproduce, prepare Derivative Works of,
71
+ publicly display, publicly perform, sublicense, and distribute the
72
+ Work and such Derivative Works in Source or Object form.
73
+
74
+ 3. Grant of Patent License. Subject to the terms and conditions of
75
+ this License, each Contributor hereby grants to You a perpetual,
76
+ worldwide, non-exclusive, no-charge, royalty-free, irrevocable
77
+ (except as stated in this section) patent license to make, have made,
78
+ use, offer to sell, sell, import, and otherwise transfer the Work,
79
+ where such license applies only to those patent claims licensable
80
+ by such Contributor that are necessarily infringed by their
81
+ Contribution(s) alone or by combination of their Contribution(s)
82
+ with the Work to which such Contribution(s) was submitted. If You
83
+ institute patent litigation against any entity (including a
84
+ cross-claim or counterclaim in a lawsuit) alleging that the Work
85
+ or a Contribution incorporated within the Work constitutes direct
86
+ or contributory patent infringement, then any patent licenses
87
+ granted to You under this License for that Work shall terminate
88
+ as of the date such litigation is filed.
89
+
90
+ 4. Redistribution. You may reproduce and distribute copies of the
91
+ Work or Derivative Works thereof in any medium, with or without
92
+ modifications, and in Source or Object form, provided that You
93
+ meet the following conditions:
94
+
95
+ (a) You must give any other recipients of the Work or
96
+ Derivative Works a copy of this License; and
97
+
98
+ (b) You must cause any modified files to carry prominent notices
99
+ stating that You changed the files; and
100
+
101
+ (c) You must retain, in the Source form of any Derivative Works
102
+ that You distribute, all copyright, patent, trademark, and
103
+ attribution notices from the Source form of the Work,
104
+ excluding those notices that do not pertain to any part of
105
+ the Derivative Works; and
106
+
107
+ (d) If the Work includes a "NOTICE" text file as part of its
108
+ distribution, then any Derivative Works that You distribute must
109
+ include a readable copy of the attribution notices contained
110
+ within such NOTICE file, excluding those notices that do not
111
+ pertain to any part of the Derivative Works, in at least one
112
+ of the following places: within a NOTICE text file distributed
113
+ as part of the Derivative Works; within the Source form or
114
+ documentation, if provided along with the Derivative Works; or,
115
+ within a display generated by the Derivative Works, if and
116
+ wherever such third-party notices normally appear. The contents
117
+ of the NOTICE file are for informational purposes only and
118
+ do not modify the License. You may add Your own attribution
119
+ notices within Derivative Works that You distribute, alongside
120
+ or as an addendum to the NOTICE text from the Work, provided
121
+ that such additional attribution notices cannot be construed
122
+ as modifying the License.
123
+
124
+ You may add Your own copyright statement to Your modifications and
125
+ may provide additional or different license terms and conditions
126
+ for use, reproduction, or distribution of Your modifications, or
127
+ for any such Derivative Works as a whole, provided Your use,
128
+ reproduction, and distribution of the Work otherwise complies with
129
+ the conditions stated in this License.
130
+
131
+ 5. Submission of Contributions. Unless You explicitly state otherwise,
132
+ any Contribution intentionally submitted for inclusion in the Work
133
+ by You to the Licensor shall be under the terms and conditions of
134
+ this License, without any additional terms or conditions.
135
+ Notwithstanding the above, nothing herein shall supersede or modify
136
+ the terms of any separate license agreement you may have executed
137
+ with Licensor regarding such Contributions.
138
+
139
+ 6. Trademarks. This License does not grant permission to use the trade
140
+ names, trademarks, service marks, or product names of the Licensor,
141
+ except as required for reasonable and customary use in describing the
142
+ origin of the Work and reproducing the content of the NOTICE file.
143
+
144
+ 7. Disclaimer of Warranty. Unless required by applicable law or
145
+ agreed to in writing, Licensor provides the Work (and each
146
+ Contributor provides its Contributions) on an "AS IS" BASIS,
147
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
148
+ implied, including, without limitation, any warranties or conditions
149
+ of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
150
+ PARTICULAR PURPOSE. You are solely responsible for determining the
151
+ appropriateness of using or redistributing the Work and assume any
152
+ risks associated with Your exercise of permissions under this License.
153
+
154
+ 8. Limitation of Liability. In no event and under no legal theory,
155
+ whether in tort (including negligence), contract, or otherwise,
156
+ unless required by applicable law (such as deliberate and grossly
157
+ negligent acts) or agreed to in writing, shall any Contributor be
158
+ liable to You for damages, including any direct, indirect, special,
159
+ incidental, or consequential damages of any character arising as a
160
+ result of this License or out of the use or inability to use the
161
+ Work (including but not limited to damages for loss of goodwill,
162
+ work stoppage, computer failure or malfunction, or any and all
163
+ other commercial damages or losses), even if such Contributor
164
+ has been advised of the possibility of such damages.
165
+
166
+ 9. Accepting Warranty or Additional Liability. While redistributing
167
+ the Work or Derivative Works thereof, You may choose to offer,
168
+ and charge a fee for, acceptance of support, warranty, indemnity,
169
+ or other liability obligations and/or rights consistent with this
170
+ License. However, in accepting such obligations, You may act only
171
+ on Your own behalf and on Your sole responsibility, not on behalf
172
+ of any other Contributor, and only if You agree to indemnify,
173
+ defend, and hold each Contributor harmless for any liability
174
+ incurred by, or claims asserted against, such Contributor by reason
175
+ of your accepting any such warranty or additional liability.
176
+
177
+ END OF TERMS AND CONDITIONS
178
+
179
+ APPENDIX: How to apply the Apache License to your work.
180
+
181
+ To apply the Apache License to your work, attach the following
182
+ boilerplate notice, with the fields enclosed by brackets "[]"
183
+ replaced with your own identifying information. (Don't include
184
+ the brackets!) The text should be enclosed in the appropriate
185
+ comment syntax for the file format. We also recommend that a
186
+ file or class name and description of purpose be included on the
187
+ same "printed page" as the copyright notice for easier
188
+ identification within third-party archives.
189
+
190
+ Copyright [yyyy] [name of copyright owner]
191
+
192
+ Licensed under the Apache License, Version 2.0 (the "License");
193
+ you may not use this file except in compliance with the License.
194
+ You may obtain a copy of the License at
195
+
196
+ http://www.apache.org/licenses/LICENSE-2.0
197
+
198
+ Unless required by applicable law or agreed to in writing, software
199
+ distributed under the License is distributed on an "AS IS" BASIS,
200
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
201
+ See the License for the specific language governing permissions and
202
+ limitations under the License.
@@ -0,0 +1,8 @@
1
+ # The skills' text: CC BY 4.0
2
+
3
+ The text of each skill (`plugins/dairy-data-tools/skills/*/SKILL.md`) is licensed under the Creative Commons
4
+ Attribution 4.0 International licence: https://creativecommons.org/licenses/by/4.0/
5
+
6
+ You may share and adapt it for any purpose, as long as you give credit ("Dairy Data Tools, by Pádraig Lucey, Dairy Data
7
+ Science"), link to the licence, and say if you changed it. The scripts beside the skills are code, under Apache-2.0
8
+ (LICENSE).
@@ -0,0 +1,15 @@
1
+ Dairy Data Tools
2
+ Copyright 2026 Pádraig Lucey (Dairy Data Science, https://dairydatascience.com)
3
+
4
+ The code (Python scripts, tools and tests) is licensed under the Apache License, Version 2.0 (LICENSE).
5
+ The skills' text (every SKILL.md) is licensed under Creative Commons Attribution 4.0 International (LICENSE-skills.md).
6
+ The sample herd is made up, by the author's own herd simulator; no real farm's records are in this repository.
7
+
8
+ Figures and their sources:
9
+ - Energy-corrected milk: 0.327 x milk + 12.95 x fat + 7.65 x protein, in lb (Tyrrell and Reid, 1965; Orth, 1992).
10
+ - Predicted dry matter intake: National Academies of Sciences, Engineering, and Medicine (2021), Nutrient
11
+ Requirements of Dairy Cattle, 8th revised edition, equation 2-1.
12
+ - 21-day pregnancy rate: counted the way DairyComp 305's BREDSUM report counts it.
13
+
14
+ DairyComp 305 and EZfeed are products of Valley Ag Software. This project is not affiliated with or endorsed
15
+ by Valley Ag Software. It reads only export files that the programs write for their users.
dairytools/__init__.py ADDED
@@ -0,0 +1,10 @@
1
+ """Dairy Data Tools: read a farm's DairyComp and EZfeed exports and work out what a nutritionist asks.
2
+
3
+ Python standard library only. Read-only: nothing is written except where a command is told to, and nothing is sent
4
+ over the network. Ported from the author's earlier R version, with the same rules.
5
+
6
+ The one source is tools/dairytools in the repository; tools/sync_scripts.py copies it into each skill's scripts/
7
+ folder, because in Claude's chat only a skill's own folder reaches the code sandbox.
8
+ """
9
+
10
+ __version__ = "0.2.0"