daiquiri-ui 2025.12.5__py3-none-any.whl → 2026.2.0__py3-none-any.whl

daiquiri_ui/static/assets/TomoAlign-b80a68c3.js

@@ -0,0 +1,7 @@
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daiquiri_ui/static/assets/TomoDetector-500d46af.js

@@ -0,0 +1 @@
+import{j as o,ag as g,aR as S,aS as h,r as v,B as M,aQ as D,ad as j,H as y}from"./index-b3c0133a.js";import{a as C,T as w,D as I,S as z,L as T}from"./UseMouseModeInteraction-51c6269c.js";import{u as b}from"./colormap-6e43299c.js";import{u as R,a as A,b as H}from"./TomoDetector-e04a5a8b.js";import{D as F}from"./DropdownDetector-5016908a.js";import{I as L,A as P}from"./AutoscaleOption-3cb99678.js";import{H as N}from"./HistogramDomainSlider-304bdab4.js";import{p as V}from"./geometry-cd448ec1.js";import{L as k}from"./Label-9d8979b3.js";import{V as q}from"./VSegment-f0d42c9a.js";import"./index-a9bb7636.js";import"./hooks-171c0765.js";import"./ColorMap-be59ad21.js";import"./Image-ee61818a.js";function O(s){const{domain:a}=s,{displayArray:i,detectorSize:e}=s.detectorArray;return o.jsx(L,{values:i,domain:a,colorMap:s.lut,invertColorMap:s.isColorMapInverted,scaleType:s.scale,position:[e.width*.5,e.height*.5,0],scale:[1,1,1],size:e})}function W(s){var d,u,p;const{tomoHardware:a,detectorArray:i}=s,e=(u=(d=i.imagePixelSize)==null?void 0:d.to("mm"))==null?void 0:u.scalar,r=a.sy?V(a.sy):null;if(r===null||e===void 0)return o.jsx(o.Fragment,{});const c=i.detectorSize.width,{sampleStage:l}=a,x=((p=l==null?void 0:l.properties.detector_center)==null?void 0:p[0])??0,t=i.detectorSize.height,n=c*.5+r/e-x,m=new g(n,t*.75),f=t/50;return o.jsxs(o.Fragment,{children:[o.jsx(q,{x:n,y1:t,y2:t*.75,color:"red",gapColor:"white",dashSize:f,gapSize:f,lineWidth:2}),o.jsx(k,{datapos:[m.x,m.y],color:"#FF0000",text:"Theorical rotation axis"})]})}D("daiquiri.components.tomo.detector.Default");function Y(s){const{options:a}=s,{tomoconfig:i}=a,e=R(),r=S(i??""),c=h(r),l=A({sampleStage:c}),t=H({detector:l,sampleStage:c,profile:e.profile,normalization:e.scaleType,autoscale:e.autoscale,autoscaleMode:e.autoscaleMode,domain:e.scaleDomain,enabled:!0,minRefreshPeriod:.5}).data,n=v.useRef(null),m=C("zoom"),{mouseMode:f}=m,d=(t==null?void 0:t.detectorSize)??{width:0,height:0},u=t==null?void 0:t.statistics;return b({statistics:t==null?void 0:t.statistics,...e}),o.jsxs("div",{className:"plot2d-container w-100 h-100",style:{flex:"1 1 0%",display:"flex",flexDirection:"column"},children:[o.jsxs(w,{align:"center",children:[o.jsx(I,{mouseModeInteraction:m}),o.jsx(M,{title:"Reset zoom (sample stage overview)",variant:"secondary",onClick:()=>{var p;(p=n==null?void 0:n.current)==null||p.actions.resetZoom()},children:o.jsx("i",{className:"fa fa-expand fa-fw fa-lg"})}),o.jsx(z,{}),o.jsx(F,{showDisplayed:!1,variant:"secondary",isInverted:e.invertColorMap,onSelectInvertion:e.setInvertColorMap,isDisplayed:!0,onSelectDisplayed:()=>{},lut:e.colorMap,onSelectLut:e.setColorMap,norm:e.scaleType,onSelectNorm:e.setScaleType,autoscale:e.autoscale,onSelectAutoscale:e.setAutoscale,autoscaleMode:e.autoscaleMode,onSelectAutoscaleMode:e.setAutoscaleMode,profile:e.profile,onSelectProfile:e.setProfile,array:t}),o.jsx(P,{disabled:u===void 0,...e}),o.jsx(N,{disabled:u===void 0,statistics:t==null?void 0:t.statistics,...e})]}),o.jsx("div",{style:{flex:"1 1 auto",display:"flex",margin:0,minHeight:0},children:o.jsx(T,{plotRef:n,abscissaConfig:{visDomain:[0,d.width],label:"px"},ordinateConfig:{visDomain:[0,d.height],label:"px",flip:!0},mouseMode:f,aspect:"equal",children:t&&o.jsxs(o.Fragment,{children:[o.jsx(O,{detectorArray:t,lut:e.colorMap,isColorMapInverted:e.invertColorMap,scale:e.scaleType,domain:e.scaleDomain}),o.jsx(W,{tomoHardware:c,detectorArray:t})]})})})]})}function B(s){return o.jsx(Y,{...s})}function ae(s){const{yamlNode:a,tomoconfig:i,...e}=s;j(a,"tomoconfig",i),y(a,e);const r={tomoconfig:i};return o.jsx(B,{options:r})}export{ae as default};

daiquiri_ui/static/assets/TomoDetector-e04a5a8b.js

@@ -0,0 +1 @@
+import{u as l,b as h,a as f}from"./ColorMap-be59ad21.js";import{r,bY as g,aQ as v,aT as D}from"./index-b3c0133a.js";import{A as u}from"./colormap-6e43299c.js";import{a as b}from"./index-a9bb7636.js";function T(e,i,o,a=!1){const t=r.useRef(),n=r.useRef();return g(()=>{t.current&&clearTimeout(t.current)}),r.useMemo(()=>{const s=(c,m)=>{n.current=void 0,e.apply(c,m),t.current=setTimeout(()=>{t.current=void 0,!a&&n.current&&(s(n.current.this,n.current.args),n.current=void 0)},o)},d=function(...c){if(t.current){n.current={args:c,this:this};return}s(this,c)};return Object.defineProperties(d,{length:{value:e.length},name:{value:`${e.name||"anonymous"}__throttled__${o}`}}),d},[o,a,...i])}function R(){return{...l({name:"tomo/defaultcolormap"})}}v("daiquiri.components.tomo.utils.TomoDetector");function x(e){const i=D();return r.useMemo(()=>{function o(){var t;if(e.sampleStage){const{detector:n}=e.sampleStage;return n?n.id:""}return((t=e.sampleStageRefs)==null?void 0:t.detector)??""}const a=o();return i[a]},[e.sampleStage,i])}function z(e){const[i,o]=h(),a=T(o,[e.minRefreshPeriod,o],e.minRefreshPeriod*1e3,!0);r.useEffect(()=>{e.profile!=="u8"&&e.enabled&&e.detector&&a({detector:e.detector,lut:"Cividis",autoscale:u.StdDev3,normalization:b.Linear,process:e.processing??f.Flatfield,profiles:[e.profile],histogram:e.histogram,shared:e.shared})},[e.detector,a,e.enabled,e.profile,e.processing,e.histogram,e.shared]);function t(){return e.autoscale&&e.autoscaleMode!==u.None?{autoscale:e.autoscaleMode}:{vmin:e.domain[0],vmax:e.domain[1],autoscale:u.None}}return r.useEffect(()=>{e.profile==="u8"&&e.enabled&&e.detector&&a({detector:e.detector,lut:"Cividis",normalization:e.normalization,process:e.processing??f.Flatfield,profiles:[e.profile],histogram:e.histogram,...t(),shared:e.shared})},[e.detector,a,e.enabled,e.profile,e.processing,e.autoscale,e.autoscaleMode,e.normalization,e.domain[0],e.domain[1],e.histogram,e.shared]),i}export{x as a,z as b,R as u};

daiquiri_ui/static/assets/TomoDetectorView-952499e6.js

@@ -0,0 +1,64 @@
+import{b as ue,j as e,aH as W,as as S,B as H,i as xe,R as C,C as v,u as I,aU as fe,aV as pe,aW as he,r as z,aX as je,aQ as E,ak as k,ag as ve,aT as ye,aR as ge,aS as we,aL as T,ad as Se,aF as ze,H as De}from"./index-b3c0133a.js";import{O as Ne}from"./OptionsProcess-da629bfb.js";import{a as Me,T as be,D as Ce,S as _,L as J}from"./UseMouseModeInteraction-51c6269c.js";import{g as P,p as A,a as R,f as Ie}from"./geometry-cd448ec1.js";import{a as Pe,T as N}from"./ColorMap-be59ad21.js";import{u as Fe}from"./colormap-6e43299c.js";import{O as ke,w as ee}from"./index-a9bb7636.js";import{u as Ve,b as Te}from"./TomoDetector-e04a5a8b.js";import{D as Le}from"./DropdownDetector-5016908a.js";import{S as se}from"./SceneScale-e2a42af2.js";import{P as He}from"./SelectionPoint-a2cb4dfc.js";import{L as te}from"./LoadingMessage-03b4fa4f.js";import{I as Oe,A as Ye}from"./AutoscaleOption-3cb99678.js";import{H as We}from"./HistogramDomainSlider-304bdab4.js";import{R as Re,a as oe}from"./RulerButton-a95a6035.js";import{r as L}from"./TomoService-e9741d6a.js";import{c as Ee,L as ae}from"./Label-9d8979b3.js";import{S as Xe}from"./ScreenScale-b2417934.js";import{C as _e}from"./CrossMarker-71cd11cf.js";import{C as Ae}from"./Cross-d5df0df3.js";import{V as Ue}from"./VSegment-f0d42c9a.js";import"./hooks-171c0765.js";import"./QtyHelper-8429914f.js";import"./Image-ee61818a.js";import"./Anchor-0b4a3d33.js";import"./DraggableRect-25d91c7d.js";import"./types-c366a377.js";import"./HSegment-8d2c001e.js";function $e(t){const{mouseMode:a,setOrResetMouseMode:n}=t,s=ue();function i(x,c){return x?x.alias??x.name:c}function l(x){if(!s)return"You must have the control to the session to move motors";if(!x)return"This motor is not available";if(!x.online)return"This motor is not online";const{state:c}=x.properties;if(!c.includes("READY"))return`This motor is not ready (found ${x.properties.state})`}const r=l(t.sy),o=l(t.sz),m=l(t.sampy),d=i(t.sy,"sy"),u=i(t.sz,"sz"),f=i(t.sampy,"sampy");return e.jsxs(W,{as:S,className:t.className,children:[t.sampy!==null&&e.jsxs(H,{variant:a==="sampy"?"danger":"secondary",onClick:()=>{n==null||n("sampy")},disabled:m!==void 0,title:m,children:[e.jsx("i",{className:"fa fam-arrow-h-over-rot"})," ",f]}),e.jsxs(H,{variant:a==="sy"?"danger":"secondary",onClick:()=>{n==null||n("sy")},disabled:r!==void 0,title:r,children:[e.jsx("i",{className:"fa fam-arrow-h-under-rot"})," ",d]}),e.jsxs(H,{variant:a==="sz"?"danger":"secondary",onClick:()=>{n==null||n("sz")},disabled:o!==void 0,title:o,children:[e.jsx("i",{className:"fa fa-arrows-v"})," ",u]})]})}function Be(t,a,n){const s=re(t);if(s===null)return null;const{y:i,z:l,fov:r}=s;if(r===null)return null;function o(){if(a===null||n.follow==="motors")return[i,l];const f=le(t,a);return f===null?[0,0]:[f.y,f.z]}const[m,d]=o();function u(){return t.sampy===null?`${P(t.sy,"sy")} (mm)`:`${P(t.sy,"sy")} + ${P(t.sampy,"sampy")} (mm)`}return{detectorCenter:[i,l],minDetectorPos:[i-r[0]*.5,l-r[1]*.5],maxDetectorPos:[i+r[0]*.5,l+r[1]*.5],viewCenter:[m-r[0]*.5,d-r[1]*.5*n.fieldOfView],minViewPos:[m-r[0]*.5,d-r[1]*.5*n.fieldOfView],maxViewPos:[m+r[0]*.5,d+r[1]*.5*n.fieldOfView],labelY:u(),labelZ:`${P(t.sz,"sz")} (mm)`}}function re(t){const{sy:a,sz:n,sampy:s,tomoDetector:i,detector:l}=t;if(a===null||n===null)return null;const r=A(n),o=R(s)??0,m=A(a),d=Ie(i,l);return{y:m+o,z:r,fov:d}}function le(t,a){const{imagePixelSize:n,sampyPosition:s,syPosition:i,szPosition:l,detectorCenterY:r,detectorCenterZ:o}=a;if(n===null||n.units()==="pixel"||i===null||l===null)return null;const{sampleStage:m}=t,d=(m==null?void 0:m.properties.detector_center)??[0,0],u=d[0]??0,f=d[1]??0,x=(r==null?void 0:r.to("mm").scalar)??0,c=(o==null?void 0:o.to("mm").scalar)??0,O=n.to("mm").scalar,M=i.to("mm").scalar,F=l.to("mm").scalar,b=s?s.to("mm").scalar:0,y=M+b+(u-x),U=F+(f-c);return{y,z:U,px:O}}function qe(t,a){return t===a?"primary":"secondary"}function h(t){return e.jsx(H,{variant:qe(t.var,t.value),onClick:()=>{t.setter(t.value)},className:"text-nowrap",size:"sm",children:t.children})}function Ge(t){const{as:a=void 0,variant:n="secondary",config:s}=t;return e.jsxs(W,{as:a,children:[e.jsx(W.Toggle,{id:"dropdown-basic",variant:n,className:"d-flex align-items-center",children:e.jsx("i",{className:"fa fa-sliders fa-fw fa-lg"})}),e.jsx(W.Menu,{className:"dropdown-menu-center",children:e.jsx("div",{className:"ms-1 me-1",style:{minWidth:"300px"},children:e.jsxs(xe,{children:[e.jsxs(C,{children:[e.jsx(v,{className:"my-auto",children:"Display axes"}),e.jsx(v,{xs:7,children:e.jsxs(S,{children:[e.jsx(h,{var:s.displayAxes,value:!0,setter:s.setDisplayAxes,children:"Yes"}),e.jsx(h,{var:s.displayAxes,value:!1,setter:s.setDisplayAxes,children:"No"})]})})]}),e.jsxs(C,{className:"mt-1",children:[e.jsx(v,{className:"my-auto",children:"Follow"}),e.jsx(v,{xs:7,children:e.jsxs(S,{children:[e.jsx(h,{var:s.follow,value:"motors",setter:s.setFollow,children:"Motors"}),e.jsx(h,{var:s.follow,value:"last-image",setter:s.setFollow,children:"Last image"})]})})]}),e.jsxs(C,{className:"mt-1",children:[e.jsx(v,{className:"my-auto",children:"Field of view"}),e.jsx(v,{xs:7,children:e.jsxs(S,{children:[e.jsx(h,{var:s.fieldOfView,value:1,setter:s.setFieldOfView,children:"×1"}),e.jsx(h,{var:s.fieldOfView,value:1.5,setter:s.setFieldOfView,children:"×1.5"}),e.jsx(h,{var:s.fieldOfView,value:2,setter:s.setFieldOfView,children:"×2"}),e.jsx(h,{var:s.fieldOfView,value:3,setter:s.setFieldOfView,children:"×3"})]})})]}),e.jsxs(C,{className:"mt-1",children:[e.jsx(v,{className:"my-auto",children:"Crosshair"}),e.jsx(v,{xs:7,children:e.jsxs(S,{children:[e.jsx(h,{var:s.crossHair,value:!0,setter:s.setCrossHair,children:"Yes"}),e.jsx(h,{var:s.crossHair,value:!1,setter:s.setCrossHair,children:"No"})]})})]}),e.jsxs(C,{className:"mt-1",children:[e.jsx(v,{className:"my-auto",children:"Mean level"}),e.jsx(v,{xs:7,children:e.jsxs(S,{children:[e.jsx(h,{var:s.displayMean,value:!0,setter:s.setDisplayMean,children:"Show"}),e.jsx(h,{var:s.displayMean,value:!1,setter:s.setDisplayMean,children:"Hide"})]})})]}),e.jsxs(C,{className:"mt-1",children:[e.jsx(v,{className:"my-auto",children:"Timestamp"}),e.jsx(v,{xs:7,children:e.jsxs(S,{children:[e.jsx(h,{var:s.displayEpoch,value:!0,setter:s.setDisplayEpoch,children:"Show"}),e.jsx(h,{var:s.displayEpoch,value:!1,setter:s.setDisplayEpoch,children:"Hide"})]})})]}),e.jsxs(C,{className:"mt-1",children:[e.jsx(v,{className:"my-auto",children:"Histogram"}),e.jsx(v,{xs:7,children:e.jsxs(S,{children:[e.jsx(h,{var:s.displayHistogram,value:!0,setter:s.setDisplayHistogram,children:"Show"}),e.jsx(h,{var:s.displayHistogram,value:!1,setter:s.setDisplayHistogram,children:"Hide"})]})})]})]})})})]})}function Ze(){const[t,a]=I("tomo/detectorview/follow","last-image"),[n,s]=I("tomo/detectorview/axes",!0),[i,l]=I("tomo/detectorview/field-of-view",1),[r,o]=I("tomo/detectorview/crosshair",!1),[m,d]=I("tomo/detectorview/mean",!0),[u,f]=I("tomo/detectorview/epoch",!1),[x,c]=I("tomo/detectorview/histogram",!1);return{follow:t,setFollow:a,displayAxes:n,setDisplayAxes:s,fieldOfView:i,setFieldOfView:l,crossHair:r,setCrossHair:o,displayMean:m,setDisplayMean:d,displayEpoch:u,setDisplayEpoch:f,displayHistogram:x,setDisplayHistogram:c}}class Ke extends pe{constructor(){super({uniforms:{color:{value:new he},lineWidth:{value:0},sizeXInScreen:{value:0},sizeYInScreen:{value:0},inner:{value:0}},vertexShader:`
+out vec2 pixelCoord;
+
+void main() {
+    gl_Position = projectionMatrix * modelViewMatrix * vec4(position, 1.0);
+    pixelCoord = vec2(position.x, position.y);
+}
+      `,fragmentShader:`
+uniform vec4 color;
+uniform float lineWidth;
+uniform float sizeXInScreen;  // signed size
+uniform float sizeYInScreen;  // signed size
+uniform int inner;            // 0 or 1
+
+in vec2 pixelCoord;
+
+/**
+ * Exact signed distance function to compute an
+ * orthogonal rectangle.
+ *
+ * @param pos: Pixel position
+ * @param center: Center of the rectangle
+ * @param size: Size of the rectangle
+ */
+float sdf_rect(vec2 pos, vec2 center, vec2 size) {
+    vec2 d = abs(pos - center) - size * 0.5;
+    return length(max(d, 0.0)) + min(max(d.x, d.y), 0.0);
+}
+
+void main() {
+  float is_inner = float(inner);
+  float d1 = sdf_rect(
+    pixelCoord,
+    vec2(
+      (sizeXInScreen - (1.0 - is_inner) * lineWidth * sign(sizeXInScreen)) * 0.5,
+      is_inner * lineWidth * sign(sizeYInScreen) * 0.5
+    ),
+    vec2(abs(sizeXInScreen), lineWidth)
+  );
+  float d2 = sdf_rect(
+    pixelCoord,
+    vec2(
+      is_inner * lineWidth * sign(sizeXInScreen) * 0.5,
+      (sizeYInScreen - (1.0 - is_inner) * lineWidth * sign(sizeYInScreen)) * 0.5
+    ),
+    vec2(lineWidth, abs(sizeYInScreen))
+  );
+  float d = min(d1, d2);
+
+  if (d > 0.2) {
+    discard;
+  }
+
+  float alpha;
+  if (lineWidth >= 1.0) {
+    alpha = smoothstep(0.2, 0.0, d);
+  } else {
+    // simulate line thiner than 1px with alpha
+    alpha = lineWidth;
+  }
+
+  gl_FragColor = vec4(color.r, color.g, color.b, alpha * color.a);
+}
+      `})}}fe({CornerMarkerMaterial:Ke});function Y(t){const{x:a,y:n,color:s="black",opacity:i,sizeXInScreen:l,sizeYInScreen:r,lineWidth:o=1,inner:m=!1,zIndex:d=0}=t,u=z.useRef(null);return z.useEffect(()=>{const f=Ee(s,i);if(u.current){const x=u.current.uniforms;x.color.value=f,x.lineWidth.value=o,x.sizeXInScreen.value=l,x.sizeYInScreen.value=r,x.inner.value=m?1:0,je()}},[s,i,o,l,r,m]),e.jsx("group",{position:[a,n,d],children:e.jsx(Xe,{screenDirection:!1,children:e.jsxs("mesh",{children:[e.jsx("ambientLight",{}),e.jsx("planeGeometry",{attach:"geometry",args:[Math.abs(l)*2+o,Math.abs(r)*2+o,1,1]}),e.jsx("cornerMarkerMaterial",{attach:"material",transparent:!0,ref:u})]})})})}const Qe=E("daiquiri.components.tomo.detectorview.ActualDetectorLocation");function Je(t){const{x:a,y:n,fov:s}=t,i=s[0]*.5,l=s[1]*.5,r=40,o=40;return e.jsxs(e.Fragment,{children:[e.jsx(Y,{x:a+i,y:n+l,sizeXInScreen:-r,sizeYInScreen:-o,color:k.danger,lineWidth:4,inner:!0}),e.jsx(Y,{x:a-i,y:n-l,sizeXInScreen:r,sizeYInScreen:o,color:k.danger,lineWidth:4,inner:!0}),e.jsx(Y,{x:a-i,y:n+l,sizeXInScreen:r,sizeYInScreen:-o,color:k.danger,lineWidth:4,inner:!0}),e.jsx(Y,{x:a+i,y:n-l,sizeXInScreen:-r,sizeYInScreen:o,color:k.danger,lineWidth:4,inner:!0})]})}function es(t){const{tomoHardware:a}=t,{detector:n}=a,s=re(a);if(s===null)return Qe("Skipped: one of sy, sz is missing."),e.jsx(e.Fragment,{});const{y:i,z:l,fov:r}=s;return e.jsxs(e.Fragment,{children:[e.jsx(_e,{x:i,y:l,color:k.danger,sizeInScreen:40,lineWidth:3,zIndex:.5}),r!==null&&e.jsxs(e.Fragment,{children:[e.jsx(ae,{datapos:[i-r[0]*.5,l-r[1]*.5],color:k.danger,text:(n==null?void 0:n.name)??"Detector",anchor:"top-right"}),e.jsx(Je,{x:i,y:l,fov:r})]})]})}E("daiquiri.components.tomo.detectorview.DetectorPositionMesh");function ss(t){const{x:a,y:n,showMean:s,mean:i,showEpoch:l,epoch:r}=t,o=z.useMemo(()=>{if(r!==void 0)return new Date(r*1e3)},[r]);if(!l&&(!s||i===void 0))return e.jsx(e.Fragment,{});function m(d){return d===void 0?"Undefined":`${d.toLocaleTimeString("en-US",{hour12:!1,hour:"2-digit",minute:"2-digit",second:"2-digit",fractionalSecondDigits:1})}`}return e.jsxs(ke,{x:a,y:n,children:[s&&i!==void 0&&e.jsx("div",{className:"ms-2 mt-2",title:"Mean grey level",children:e.jsxs("div",{className:"bg-dark text-light p-1 rounded font-tabular-nums",children:[e.jsx("i",{className:"fa-solid fa-circle-half-stroke fa-fw fa-lg"})," ",i.toFixed(2)]})}),l&&e.jsx("div",{className:"ms-2 mt-2",title:`Timestamp (${(o==null?void 0:o.toUTCString())??"undefined"})`,children:e.jsxs("div",{className:"bg-dark text-light p-1 rounded font-tabular-nums",children:[e.jsx("i",{className:"fa-solid fa-clock fa-fw fa-lg"})," ",m(o)]})})]})}function ne(t){const{config:a,detectorArray:n}=t,{displayArray:s,statistics:i,detectorSize:l,epoch:r}=n,o=le(t.tomoHardware,n);if(o===null)return null;const{y:m,z:d,px:u}=o;return e.jsxs(e.Fragment,{children:[e.jsx(Oe,{ref:t.imageRef,values:s,domain:t.domain,colorMap:t.lut,invertColorMap:t.isColorMapInverted,scaleType:t.scale,position:[m,d,0],scale:[-u,u,u],size:l}),e.jsx(ss,{x:m+l.width*u*.5,y:d-l.height*u*.5,showMean:a.displayMean,mean:(i==null?void 0:i.mean)??void 0,showEpoch:a.displayEpoch,epoch:r}),e.jsx(Ae,{centerX:m,centerY:d,width:l.width*u,height:l.height*u,color:"white",gapColor:"black",dashSize:5,gapSize:5,lineWidth:1})]})}function ie(t){function a(d,u){return Math.round(d)===d?d.toFixed(0):d.toFixed(u)}const{sampleStage:n}=t,s=R(n.sy);R(n.sz);const i=R(n.sampy),l=P(n.sy,"sy"),r=P(n.sampy,"sampy"),o=P(n.sz,"sz"),m=2;return e.jsx("table",{children:e.jsxs("tbody",{children:[i===null&&s!==null&&e.jsxs("tr",{className:"flex-nowrap text-nowrap",children:[e.jsx("td",{children:l}),e.jsx("td",{className:"text-end",children:t.px.toFixed(m)}),e.jsx("td",{className:"text-start",children:"mm"})]}),i!==null&&s!==null&&e.jsxs("tr",{className:"flex-nowrap text-nowrap",children:[e.jsx("td",{children:l}),e.jsx("td",{className:"text-end",children:(s+i-t.px).toFixed(m)}),e.jsx("td",{className:"text-start",children:"mm"})]}),i!==null&&s!==null&&e.jsxs("tr",{className:"flex-nowrap text-nowrap",children:[e.jsx("td",{children:r}),e.jsx("td",{className:"text-end",children:(t.px-s).toFixed(m)}),e.jsx("td",{className:"text-start",children:"mm"})]}),e.jsxs("tr",{className:"flex-nowrap text-nowrap",children:[e.jsx("td",{style:{minWidth:"7em"},children:o}),e.jsx("td",{style:{minWidth:"4em"},className:"text-end",children:t.py.toFixed(m)}),e.jsx("td",{className:"text-start",children:"mm"})]}),t.pixel!==void 0&&e.jsxs("tr",{className:"flex-nowrap text-nowrap",children:[e.jsx("td",{children:"pixel"}),e.jsx("td",{className:"text-end",children:a(t.pixel,m)}),e.jsx("td",{className:"text-start"})]})]})})}E("daiquiri.components.tomo.detectorview.ActualRotationAxisLocation");function ts(t){var u,f;const{tomoHardware:a,sampleStageGeometry:n}=t;if(a.sy===null)return e.jsx(e.Fragment,{});const s=((f=(u=a.sampleStage)==null?void 0:u.properties.detector_center)==null?void 0:f[0])??0,i=n.detectorCenter[0]+A(a.sy)-s,l=n.maxDetectorPos[1],r=n.maxDetectorPos[1]-n.minDetectorPos[1],o=l-r*.1,m=new ve(i,o),d=10;return e.jsxs(e.Fragment,{children:[e.jsx(Ue,{x:i,y1:l,y2:o,color:"red",gapColor:"white",dashSize:d,gapSize:d,lineWidth:2,zIndex:1.5}),e.jsx(ae,{datapos:[m.x,m.y],color:"#FF0000",text:"Theorical rotation axis"})]})}function os(t,a){z.useEffect(()=>{function n(){a()}const s=t.current;return s===null?()=>{}:(s.addEventListener("pointerleave",n),()=>{s.removeEventListener("pointerleave",n)})},[t.current])}E("daiquiri.components.tomo.detectorview.Default");function ns(t,a){return t??a}function is(t){var G,Z,K,Q;const{options:a}=t,n=ye(),s=ge(a.tomoconfig??""),i=we(s),l=((G=i.detector)==null?void 0:G.id)??"",r=n[l],o=Ve(),m=ns(a.moveenabled,!0),d=Ze(),[u,f]=z.useState(Pe.Flatfield),x=Te({detector:r,sampleStage:i,profile:o.profile,normalization:o.scaleType,autoscale:o.autoscale,autoscaleMode:o.autoscaleMode,domain:o.scaleDomain,histogram:d.displayHistogram,enabled:!0,minRefreshPeriod:.5,processing:u}),c=x.data;Fe({statistics:c==null?void 0:c.statistics,...o});const O=z.useRef(null),M=z.useRef(null),F=z.useRef(null),b=Me("zoom"),{mouseMode:y,setMouseMode:U}=b,w=Be(i,c,d);function $(p){if(!i)return null;const j=i[p]||null;if(!j)return null;const D=j.properties.position;return D===null?null:new T(D,j.properties.unit)}const X=$("sampy"),V=$("sy");os(O,()=>{b.resetMouseMode()});const ce=z.useCallback(p=>{const j=p.dataPt.x,D=p.dataPt.y;switch(y){case"pan":break;case"zoom":break;case"sampy":if(V!==null){const g=new T(j,"mm").sub(V);L({sampy:g})}else console.error("sy axis is not defined");break;case"sy":if(V!==null)if(X!==null){const g=V.add(X).sub(new T(j,"mm"));L({sy:g})}else{const g=new T(j,"mm");L({sy:g})}else console.error("sy axis is not defined");break;case"sz":L({sz:new T(D,"mm")});break;default:console.error(`Unexpected ${y}`)}},[y,X,V,L,c]),B=c==null?void 0:c.statistics,de=!(c!=null&&c.imagePixelSize)||((Z=c==null?void 0:c.imagePixelSize)==null?void 0:Z.units())==="pixel";function me(p){return p?{[N.Dark]:"Dark",[N.Flat]:"Flat",[N.Proj]:"Proj",[N.Unknown]:"Unknown data",[N.FlatfieldNorm]:void 0,[N.ProjNorm]:"Only normalized proj",[N.ProjDarkNorm]:"Only normalized proj-dark",[N.ProjFlatNorm]:"Only normalized proj/flat"}[p]:void 0}const q=me(c==null?void 0:c.datakind);return e.jsxs("div",{ref:O,className:"plot2d-container w-100 h-100",style:{flex:"1 1 0%",display:"flex",flexDirection:"column"},children:[e.jsxs(be,{align:"center",children:[e.jsx(Ce,{mouseModeInteraction:b}),e.jsx(H,{title:"Reset zoom (sample stage overview)",variant:"secondary",onClick:()=>{var p;(p=M==null?void 0:M.current)==null||p.actions.resetZoom()},children:e.jsx("i",{className:"fa fa-expand fa-fw fa-lg"})}),e.jsx(_,{}),e.jsx(Re,{mouseModeInteraction:b}),m&&e.jsx($e,{mouseMode:y,setOrResetMouseMode:b.setOrResetMouseMode,sy:i.sy,sz:i.sz,sampy:i.sampy}),e.jsx(_,{}),e.jsx(Le,{showDisplayed:!1,variant:"secondary",isInverted:o.invertColorMap,onSelectInvertion:o.setInvertColorMap,isDisplayed:!0,onSelectDisplayed:()=>{},lut:o.colorMap,onSelectLut:o.setColorMap,norm:o.scaleType,onSelectNorm:o.setScaleType,autoscale:o.autoscale,onSelectAutoscale:o.setAutoscale,autoscaleMode:o.autoscaleMode,onSelectAutoscaleMode:o.setAutoscaleMode,profile:o.profile,onSelectProfile:o.setProfile,array:c}),e.jsx(Ye,{disabled:B===void 0,...o}),e.jsx(We,{disabled:B===void 0,statistics:c==null?void 0:c.statistics,histogram:c==null?void 0:c.histogram,...o}),e.jsx(Ne,{as:S,value:u,onSelect:f,detector:r}),e.jsx(_,{}),e.jsx(Ge,{config:d})]}),e.jsxs("div",{style:{flex:"1 1 auto",display:"flex",margin:0,minHeight:0},children:[w!==null&&e.jsxs(J,{plotRef:M,abscissaConfig:{visDomain:[w.minViewPos[0],w.maxViewPos[0]],label:w.labelY,flip:!0},ordinateConfig:{visDomain:[w.minViewPos[1],w.maxViewPos[1]],label:w.labelZ,flip:!0},showAxes:d.displayAxes,mouseMode:y,aspect:"equal",children:[e.jsx(te,{loading:x.loading,info:q,warning:c===null?"No data":void 0,danger:x.error}),e.jsx(oe,{mouseMode:y,plotUnit:"mm"}),c&&e.jsx(ne,{tomoHardware:i,config:d,detectorArray:c,lut:o.colorMap,isColorMapInverted:o.invertColorMap,scale:o.scaleType,domain:o.scaleDomain,imageRef:F}),e.jsx(ts,{tomoHardware:i,sampleStageGeometry:w}),e.jsx(es,{tomoHardware:i}),e.jsx(ee,{guides:d.crossHair?"both":void 0,renderTooltip:(p,j)=>{var g;const D=(g=F.current)==null?void 0:g.pick(p,j);return e.jsx(ie,{sampleStage:i,px:p,py:j,pixel:D})}}),(y==="sz"||y==="sampy"||y==="sy")&&e.jsx(He,{onClick:ce}),e.jsx(se,{unit:"mm"})]}),w===null&&e.jsxs(J,{plotRef:M,abscissaConfig:{visDomain:[0,((K=c==null?void 0:c.detectorSize)==null?void 0:K.width)??1],label:"width (px)",flip:!0},ordinateConfig:{visDomain:[0,((Q=c==null?void 0:c.detectorSize)==null?void 0:Q.height)??1],label:"height (px)",flip:!0},showAxes:d.displayAxes,mouseMode:y,children:[e.jsx(te,{loading:x.loading,info:q,warning:c===null?"No data":de?"No sample pixel size defined":void 0,danger:x.error}),c&&e.jsx(e.Fragment,{children:e.jsx(ne,{tomoHardware:i,config:d,detectorArray:c,lut:o.colorMap,isColorMapInverted:o.invertColorMap,scale:o.scaleType,domain:o.scaleDomain,imageRef:F})}),e.jsx(ee,{guides:d.crossHair?"both":void 0,renderTooltip:(p,j)=>{var g;const D=(g=F.current)==null?void 0:g.pick(p,j);return e.jsx(ie,{sampleStage:i,px:p,py:j,pixel:D})}}),e.jsx(se,{unit:"px"}),e.jsx(oe,{mouseMode:y,plotUnit:"px"})]})]})]})}function as(t){return e.jsx(is,{...t})}function Ls(t){const{yamlNode:a,tomoconfig:n,moveenabled:s,...i}=t;Se(a,"tomoconfig",n),ze(a,"moveenabled",s),De(a,i);const l={tomoconfig:n,moveenabled:s};return e.jsx(as,{options:l})}export{Ls as default};

daiquiri_ui/static/assets/TomoHolo-db2c8449.js

@@ -0,0 +1 @@
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n=ie(((a=s==null?void 0:s.properties.sample_stage)==null?void 0:a.slice(9))??null),r=(n==null?void 0:n.properties.x_axis_focal_pos)??null,l=(t==null?void 0:t.properties.distances)??[];return h.useMemo(()=>{const u=[];r&&u.push({distanceName:"focal",distanceNum:-1,pixel_size:0,position:r,z1:0});for(const[m,o]of l.entries())u.push({...o,distanceName:`dist${m+1}`,distanceNum:m+1});return u},[r,l])}function Ce(s){var j,N,I,R,H;const{options:t}=s,{tomoconfig:n}=t,r=J(n??""),l=X(n??""),a=fe((l==null?void 0:l.holotomo)??null),u=V((a==null?void 0:a.id)??null),m=ee((l==null?void 0:l.tomoDetector)??null),o=te(),d=se((l==null?void 0:l.sx)??null),v=V((d==null?void 0:d.id)??null),i=(d==null?void 0:d.properties.state[0])==="MOVING",c=be(r,a),[f,g]=h.useState(!1),_=((j=ne().avatar)==null?void 0:j.sprite_sheet)??"resources/tomo/fox-yellow.png";if(!a)return e.jsx(L,{variant:"warning",children:"No holotomo object found"});function b(p){u.call("move",p)}const C=f;function 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daiquiri_ui/static/assets/TomoPusherView-a50e2acd.js

@@ -0,0 +1 @@
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Ue}from"./ColorMap-be59ad21.js";import"./ScreenScale-b2417934.js";import"./Anchor-0b4a3d33.js";import"./VSegmentRoi-d5e035cc.js";import"./QtyHelper-8429914f.js";import"./types-c366a377.js";function Ee(i){const{geometry:s,lineWidth:a=2,color:d="blue",opacity:x=1,zIndex:l=1,visible:n=!0,readOnly:m=i.onGeometryChanged===void 0}=i,C=i.unit===void 0?"":` ${i.unit}`,o=ee(),[j,r]=Z.useState(void 0);if(J(({camera:h})=>{const p=o.getVisibleDomains(h),M=.9;r(p.yVisibleDomain[0]*M+p.yVisibleDomain[1]*(1-M))}),!n)return e.jsx(e.Fragment,{});const y=s.gap*.5,g=s.x-Math.abs(y),D=s.x+Math.abs(y);function V(h,p){var R;const{x:M}=h;(R=i.onGeometryChanged)==null||R.call(i,{...s,x:M},p)}function b(h,p){var S;const{x:M}=h,R=(s.x+y+M)*.5,H=s.x+y-M;(S=i.onGeometryChanged)==null||S.call(i,{gap:p?H:Math.abs(H),x:R},p)}function k(h,p){var S;const{x:M}=h,R=(s.x-y+M)*.5,H=M-(s.x-y);(S=i.onGeometryChanged)==null||S.call(i,{gap:p?H:Math.abs(H),x:R},p)}const P=`${s.gap.toFixed(2)}${C}`;return 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0:{min:R(j.datasets.min),max:R(j.datasets.max),minPositive:R(j.datasets.min_positive),mean:R(j.datasets.mean),std:R(j.datasets.std)}}catch{return}}const i=t.datasets[a[0]];if(!i)throw new I(`Dataset from signal ${a[0]} does not exists`);if(i.shape.length!==2)throw new I(`Dataset from signal ${a[0]} must be 2 ndim (found ${i.shape.length})`);const n=i.data;Le(n);const r=N(t.datasets.sample_x_axis),l=N(t.datasets.sample_y_axis),h=N(t.datasets.y_axis),c=N(t.datasets.sample_pixel_size),m=N(t.datasets.used_axis_position)||new H(0,"px"),g=N(t.datasets.estimated_axis_position)||new H(0,"px"),d=R(t.datasets.delta_beta),p=B(t.datasets.backend),x=B(t.datasets.cor_backend),v=B(t.datasets.source_filename);return{histogram:s(t),imageArray:n,sampxPosition:r,sampyPosition:l,syPosition:h,axisPosition:m,samplePixelSize:c,estimatedAxisPosition:g,deltaBeta:d,backend:p,corBackend:x,stats:o(t),sourceFilename:v}}function gt(t){const{event:a}=t,[s,o]=y.useState({});return y.useEffect(()=>{if(a&&a.type===t.type){const{datacollectionid:i,autoprocprogramid:n}=a;console.log("event",a),i!==void 0&&n!==void 0&&o(r=>({...r,[`${i}`]:n}))}},[t.event]),y.useMemo(()=>{if(t.datacollectionid===void 0)return;const i=s[`${t.datacollectionid}`];return i!==void 0&&s[`group${t.datacollectiongroupid}`]!==i&&o(n=>({...n,[`group${t.datacollectiongroupid}`]:i})),i??s[`group${t.datacollectiongroupid}`]},[s,t.datacollectionid])}function pt(t){var r,l,h,c,m;const{datacollectionid:a,actions:s}=t,o=((l=(r=t.reconstructionInfo)==null?void 0:r.estimatedAxisPosition)==null?void 0:l.scalar)??void 0,i=((c=(h=t.reconstructionInfo)==null?void 0:h.axisPosition)==null?void 0:c.scalar)??void 0,n=((m=t.reconstructionInfo)==null?void 0:m.sourceFilename)??void 0;return y.useEffect(()=>{o!==void 0&&a!==void 0&&(s==null||s.updateDataCollectionMeta(a,{sourceFilename:n}))},[n]),y.useEffect(()=>{o!==void 0&&a!==void 0&&(s==null||s.updateDataCollectionMeta(a,{estimatedCor:o}))},[o]),y.useEffect(()=>{o!==void 0&&a!==void 0&&(s==null||s.updateDataCollectionMeta(a,{actualCor:i,requestedCor:null}))},[i]),e.jsx(e.Fragment,{})}function vt(t){function a(){t.datacollectionid!==void 0&&t.actions.requestSliceReconstruction({datacollectionid:t.datacollectionid,filename:t.sourceFilename})}return e.jsx(P,{variant:"secondary",title:"Recompute the slice from the sinogram",disabled:t.datacollectionid===null,onClick:a,children:e.jsx("i",{className:"fa fa-rotate-right fa-solid"})})}function yt(t){const{fetchedResult:a,reconstructedInfo:s}=t;function o(i){var n,r,l,h;return s===null?e.jsxs(F,{id:"reconstructed-slice-info",...i,children:[e.jsx(F.Header,{as:"h3",children:"Displayed data info"}),e.jsx(F.Body,{children:"No data"})]}):e.jsxs(F,{id:"reconstructed-slice-info",...i,children:[e.jsx(F.Header,{as:"h3",children:"Displayed data info"}),e.jsx(F.Body,{children:e.jsxs($,{style:{width:"17em"},children:[a.request&&e.jsxs(e.Fragment,{children:[e.jsxs(S,{className:"g-0",children:[e.jsx(f,{children:"Collection ID"}),e.jsx(f,{children:(n=a==null?void 0:a.request)==null?void 0:n.datacollectionid})]}),e.jsxs(S,{className:"g-0",children:[e.jsx(f,{children:"Program ID"}),e.jsx(f,{children:((r=a==null?void 0:a.request)==null?void 0:r.autoprocprogramid)??"last"})]})]}),e.jsxs(S,{className:"g-0",children:[e.jsx(f,{children:"Backend"}),e.jsx(f,{children:s==null?void 0:s.backend})]}),e.jsxs(S,{className:"g-0",children:[e.jsx(f,{children:"COR backend"}),e.jsx(f,{children:s==null?void 0:s.corBackend})]}),e.jsxs(S,{className:"g-0",children:[e.jsx(f,{children:"Axis position"}),e.jsxs(f,{children:[(l=s.axisPosition)==null?void 0:l.scalar.toFixed(2)," px"]})]}),e.jsxs(S,{className:"g-0",children:[e.jsx(f,{children:"Delta/beta"}),e.jsx(f,{children:(h=s.deltaBeta)==null?void 0:h.toFixed(2)})]})]})})]})}return e.jsx(ye,{trigger:["hover","focus"],placement:"bottom",overlay:o,children:e.jsx(P,{variant:"secondary",disabled:s===null,children:e.jsx("i",{className:"fa-solid fa-info fa-fw fa-lg"})})},"arg")}function jt(t){function a(o,i){return Math.round(o)===o?o.toFixed(0):o.toFixed(i)}const s=4;return e.jsxs($,{style:{width:"150px"},children:[e.jsxs(S,{children:[e.jsx(f,{xs:3,children:"u"}),e.jsx(f,{xs:8,children:t.py.toFixed(s)}),e.jsx(f,{xs:1,children:t.inMotorSpace?"mm":"px"})]}),e.jsxs(S,{children:[e.jsx(f,{xs:3,children:"v"}),e.jsx(f,{xs:8,children:t.px.toFixed(s)}),e.jsx(f,{xs:1,children:t.inMotorSpace?"mm":"px"})]}),t.pixel&&e.jsxs(S,{children:[e.jsx(f,{xs:3,children:"pixel"}),e.jsx(f,{xs:8,children:a(t.pixel,s)}),e.jsx(f,{xs:1})]})]})}class St extends ne{constructor(){super({uniforms:{color:{value:new Q},gapColor:{value:new Q},radius:{value:0},dashSize:{value:0},gapSize:{value:0},scaleX:{value:0},scaleY:{value:0},lineWidth:{value:0}},vertexShader:`
+uniform float scaleX; // signed scale
+uniform float scaleY; // signed scale
+out vec2 pixelCoord;
+// out vec2 dataCoord;
+
+void main() {
+    gl_Position = projectionMatrix * modelViewMatrix * vec4(position, 1.0);
+    vec2 pixelScale = abs(vec2(scaleX, scaleY));
+    // dataCoord = vec2(position.x, position.y);
+    pixelCoord = vec2(position.x, position.y) / pixelScale;
+}
+      `,fragmentShader:`
+uniform vec4 color;
+uniform vec4 gapColor;
+uniform float gapSize;
+uniform float dashSize;
+uniform float lineWidth;
+uniform float scaleX; // signed scale
+uniform float scaleY; // signed scale
+uniform float radius;
+in vec2 pixelCoord;
+
+const float M_PI = 3.1415926535897932384626433832795;
+const float AA_DASH = 0.5;
+
+/**
+ * Antialiasing following the line of dash and gap
+ */
+vec4 aa_dash_gap(float dist, float alpha) {
+  dist = mod(dist, (dashSize + gapSize));
+  float sd1 = (dist < dashSize) ? dist : dist - (dashSize + gapSize);
+  float sd2 = -(dist - dashSize);
+  if (abs(sd1) <= AA_DASH || abs(sd2) <= AA_DASH) {
+    if (abs(sd1) < abs(sd2)) {
+      float c = (sd1 + AA_DASH) * (0.5 / AA_DASH);
+      return (
+        vec4(color.r, color.g, color.b, alpha * color.a) * c
+        + vec4(gapColor.r, gapColor.g, gapColor.b, alpha * gapColor.a) * (1.0 - c)
+      );
+    } else {
+      float c = (sd2 + AA_DASH) * (0.5 / AA_DASH);
+      return (
+        vec4(color.r, color.g, color.b, alpha * color.a) * c
+        + vec4(gapColor.r, gapColor.g, gapColor.b, alpha * gapColor.a) * (1.0 - c)
+      );
+    }
+  }
+  if (dist <= dashSize) {
+      return vec4(color.r, color.g, color.b, alpha * color.a);
+  }
+  return vec4(gapColor.r, gapColor.g, gapColor.b, alpha * gapColor.a);
+}
+
+void main() {
+    float r = length(pixelCoord);
+    float s = (abs(scaleX) + abs(scaleY)) * 0.5;
+    float d = abs(r - radius / s) - lineWidth * 0.5;
+    if (d > 1.5) {
+      discard;
+    }
+    float alpha;
+    if (lineWidth >= 1.0) {
+        alpha = smoothstep(0.25, 0.0, d);
+    } else {
+        // simulate line thiner than 1px with alpha
+        alpha = lineWidth;
+    }
+
+    if (dashSize == 0.0) {
+        gl_FragColor = vec4(color.r, color.g, color.b, alpha * color.a);
+        return;
+    }
+
+    // try to fit a fixed integer number of dashes + gaps
+    // could be computed in the vertex shader
+    float full = 2.0 * M_PI * (radius / s) / (dashSize + gapSize);
+    float coef = ceil(full) / full;
+
+    float dist = 2.0 * atan(pixelCoord.y, pixelCoord.x) * (radius / s) * coef;
+    gl_FragColor = aa_dash_gap(dist, alpha);
+}
+      `})}}ie({CircleDashMaterial:St});function Y(t){const{center:a,radius:s,lineWidth:o=1,color:i="black",gapColor:n,dashSize:r=0,gapSize:l=r,opacity:h=1,zIndex:c=0}=t,m=y.useRef(null),g=Be();return y.useEffect(()=>{const d=K(i,h),p=K(n??"transparent",h);if(m.current){const x=m.current.uniforms;x.color.value=d,x.radius.value=s,x.gapColor.value=p,x.dashSize.value=r,x.gapSize.value=l,x.lineWidth.value=o,re()}},[i,s,n,r,l,h,o]),je(({camera:d})=>{if(m.current===null)return;const p=d.scale.x/g.sx,x=d.scale.y/g.sy,v=m.current.uniforms;v.scaleX.value=p,v.scaleY.value=x}),e.jsx("group",{position:[a[0],a[1],c],children:e.jsxs("mesh",{children:[e.jsx("ambientLight",{}),e.jsx("planeGeometry",{attach:"geometry",args:[(s+o)*2,(s+o)*2,1,1]}),e.jsx("circleDashMaterial",{attach:"material",transparent:!0,ref:m})]})})}function bt(t){const{sampleStage:a}=t,s=a.sampu?A(a.sampu):null,o=a.sampv?A(a.sampv):null,{tomoDetector:i,detector:n}=a;if(i===null||n===null||s===null||o===null)return e.jsx(e.Fragment,{});const r=Ze(i,n);if(r===null)return e.jsx(e.Fragment,{});const l=new k(o,s),h=r[0]*.5,c=r[0];function m(){const d=a.sy?A(a.sy):null;return d===null||r===null?null:r[0]*.5+Math.abs(d)}const g=m();return e.jsxs(e.Fragment,{children:[e.jsx(Y,{center:[l.x,l.y],radius:h,color:"#000000",gapColor:"#FF0000",opacity:.5,dashSize:5,gapSize:5,lineWidth:1}),e.jsx(W,{datapos:[l.x-h*.95,l.y-h*.35],color:"#FF0000",text:"Full"}),e.jsx(Y,{center:[l.x,l.y],radius:c,color:"#000000",gapColor:"#FF0000",opacity:.5,dashSize:5,gapSize:5,lineWidth:1}),e.jsx(W,{datapos:[l.x-c*.95,l.y-c*.35],color:"#FF0000",text:"Half"}),g!==null&&e.jsxs(e.Fragment,{children:[e.jsx(Y,{center:[l.x,l.y],radius:g,color:"#000000",gapColor:"#FF0000",dashSize:5,gapSize:5,lineWidth:1}),e.jsx(W,{datapos:[l.x-g,l.y-g*.175],color:"#FF0000",text:"Actual region"})]})]})}function wt(t){const{sampleStage:a}=t,s=a.sampu?A(a.sampu):null,o=a.sampv?A(a.sampv):null;return(a.sy?A(a.sy):null)===null||s===null||o===null?e.jsx(e.Fragment,{}):e.jsxs(e.Fragment,{children:[e.jsx(et,{x:o,y:s,color:"red",sizeInScreen:30,lineWidth:2.5}),e.jsx(W,{datapos:[o,s],color:"#FF0000",anchor:"top-right",text:"Actual axis position"})]})}class Ct extends ne{constructor(){super({uniforms:{color:{value:new Q},lineWidth:{value:0},sizeInScreen:{value:0},angle:{value:0}},vertexShader:`
+out vec2 pixelCoord;
+
+void main() {
+    gl_Position = projectionMatrix * modelViewMatrix * vec4(position, 1.0);
+    pixelCoord = vec2(position.x, position.y);
+}
+      `,fragmentShader:`
+// Based on antialiased arrow fields
+// Nicolas P. Rougier (http://www.loria.fr/~rougier)
+// https://www.shadertoy.com/view/ldlSWj
+// Released under BSD license.
+
+uniform vec4 color;
+uniform float lineWidth;
+uniform float sizeInScreen;
+uniform float angle;
+in vec2 pixelCoord;
+
+// Computes the signed distance from a line
+float sdf_line(vec2 p, vec2 p1, vec2 p2) {
+    vec2 center = (p1 + p2) * 0.5;
+    float len = length(p2 - p1);
+    vec2 dir = (p2 - p1) / len;
+    vec2 rel_p = p - center;
+    return dot(rel_p, vec2(dir.y, -dir.x));
+}
+
+// Computes the signed distance from a line segment
+float sdf_segment(vec2 p, vec2 p1, vec2 p2) {
+    vec2 center = (p1 + p2) * 0.5;
+    float len = length(p2 - p1);
+    vec2 dir = (p2 - p1) / len;
+    vec2 rel_p = p - center;
+    float dist1 = abs(dot(rel_p, vec2(dir.y, -dir.x)));
+    float dist2 = abs(dot(rel_p, dir)) - 0.5*len;
+    return max(dist1, dist2);
+}
+
+float sdf_arrow(vec2 texcoord,
+  float body, float head, float height,
+  float linewidth, float antialias
+) {
+  float d;
+  float w = linewidth/2.0 + antialias;
+  vec2 start = -vec2(body / 2.0, 0.0);
+  vec2 end   = +vec2(body / 2.0, 0.0);
+
+  // Arrow tip (beyond segment end)
+  if( texcoord.x > body / 2.0) {
+    // Head : 2 segments
+    float d1 = sdf_line(texcoord, end, end - head*vec2(+1.0, -height));
+    float d2 = sdf_line(texcoord, end - head*vec2(+1.0, +height), end);
+    // Body : 1 segment
+    float d3 = end.x - texcoord.x;
+    d = max(max(d1, d2), d3);
+  } else {
+    // Head : 2 segments
+    float d1 = sdf_segment(texcoord, end - head * vec2(+1.0, -height), end);
+    float d2 = sdf_segment(texcoord, end - head * vec2(+1.0, +height), end);
+    // Body : 1 segment
+    float d3 = sdf_segment(texcoord, start, end - vec2(linewidth, 0.0));
+    d = min(min(d1, d2), d3);
+  }
+  return d;
+}
+
+vec4 filled(float distance, float linewidth, float antialias, vec4 fill)
+{
+    vec4 frag_color;
+    float t = linewidth / 2.0 - antialias;
+    float signed_distance = distance;
+    float border_distance = abs(signed_distance) - t;
+    float alpha = border_distance / antialias;
+    alpha = exp(-alpha * alpha);
+
+    // Within linestroke
+    if (border_distance < 0.0) {
+        return fill;
+    }
+    // Within shape
+    if (signed_distance < 0.0) {
+      return fill;
+    }
+    // Outside shape
+    if (border_distance > (linewidth / 2.0 + antialias)) {
+        discard;
+    }
+    // Line stroke exterior border
+    return vec4(fill.rgb, alpha);
+}
+
+void main() {
+    const float M_PI = 3.1415926535897932384626433832795;
+
+    float theta = angle * M_PI / 180.0;
+    float cos_theta = cos(theta);
+    float sin_theta = sin(theta);
+    vec2 pixelCoord2 = vec2(
+      cos_theta * pixelCoord.x - sin_theta * pixelCoord.y,
+      sin_theta * pixelCoord.x + cos_theta * pixelCoord.y
+    );
+
+    const float antialias = 1.0;
+    float body = sizeInScreen;
+    float d = sdf_arrow(pixelCoord2, body, 0.30 * body, 0.8, lineWidth, antialias);
+    gl_FragColor = filled(d, lineWidth, antialias, color);
+}
+    `})}}ie({ArrowMarkerMaterial:Ct});function X(t){const{x:a,y:s,color:o="black",opacity:i,sizeInScreen:n,angle:r,lineWidth:l=1,zIndex:h=0}=t,c=y.useRef(null);return y.useEffect(()=>{const m=K(o,i);if(c.current){const g=c.current.uniforms;g.color.value=m,g.lineWidth.value=l,g.sizeInScreen.value=n,g.angle.value=r,re()}},[o,i,l,n,r]),e.jsx("group",{position:[a,s,h],children:e.jsx(tt,{screenDirection:!1,children:e.jsxs("mesh",{children:[e.jsx("ambientLight",{}),e.jsx("planeGeometry",{attach:"geometry",args:[n+l,n+l,1,1]}),e.jsx("arrowMarkerMaterial",{attach:"material",transparent:!0,ref:c})]})})})}function At(t){const{sampleStage:a}=t,s=a.sampu?A(a.sampu):null,o=a.sampv?A(a.sampv):null,i=a.somega?-Je(a.somega):null;if(i===null||s===null||o===null)return e.jsx(e.Fragment,{});const n=i/Math.PI*180,r=(t.viewRange[0][1]-t.viewRange[0][0])*.5+(t.viewRange[1][1]-t.viewRange[1][0])*.5,l=new k(0,1).rotateAround(new k(0,0),i),h=new k(-l.y,l.x).multiplyScalar(.3*r),m=new k(o,s).clone().add(l.clone().multiplyScalar(.375*r)),g=m.clone().add(h),d=m,p=m.clone().sub(h);return e.jsxs(e.Fragment,{children:[e.jsx(X,{x:g.x,y:g.y,sizeInScreen:80,angle:90-n,color:"red",lineWidth:3}),e.jsx(X,{x:d.x,y:d.y,sizeInScreen:80,angle:90-n,color:"red",lineWidth:3}),e.jsx(X,{x:p.x,y:p.y,sizeInScreen:80,angle:90-n,color:"red",lineWidth:3}),e.jsx(W,{datapos:[d.x,d.y],color:"#FF0000",text:"Beam",anchor:"bottom"})]})}const oe=le("daiquiri.components.tomo.reconstructedslice.MoveMotorInteraction");function Mt(t){const a=Fe(),{mouseMode:s}=a??{},{disabled:o,requestMoveSampleAxisAtPosition:i}=t,n=y.useCallback(r=>{const l=r.dataPt.x,h=r.dataPt.y;i(h,l)},[i]);return o||s!=="move-sample-to-axis"?(oe("MoveMotorInteraction disabled."),e.jsx(e.Fragment,{})):(oe("MoveMotorInteraction enabled."),e.jsx(at,{onClick:n}))}function _t(t){var g;const{sampleStage:a,mouseMode:s}=t,o=(g=t.reconstructedInfo)==null?void 0:g.imageArray,i=y.useRef(null),n=ce();if(!t.reconstructedInfo||o===void 0)return e.jsx(e.Fragment,{});const l=(a.somega!==null?Se(a.somega):!0)?1:-1;function h(d){const p=(o==null?void 0:o.shape[1])??0,x=(o==null?void 0:o.shape[0])??0;if(d.samplePixelSize===null||d.sampxPosition===null||d.sampyPosition===null||d.imageArray===null)return{inMotorSpace:!1,xRange:[0,x],yRange:[0,p],center:[p/2,x/2,0],scale:[1,1,1],height:x,width:p};const v=d.samplePixelSize.to("mm").scalar,w=d.sampxPosition.to("mm").scalar,j=d.sampyPosition.to("mm").scalar,M=d.imageArray.shape[1]*.5,C=d.imageArray.shape[0]*.5;return{inMotorSpace:!0,xRange:[j-M*v,j+M*v],yRange:[w-C*v,w+C*v],center:[j,w,0],scale:[-v,-l*v,1],width:M*v*2,height:C*v*2}}const c=h(t.reconstructedInfo);function m(d,p){return d===null||!c.inMotorSpace?`${p} (px)`:`${d.alias??d.name} (mm)`}return e.jsx("div",{style:{flex:"1 1 auto",display:"flex",margin:0,minHeight:0},className:t.className,children:e.jsxs(Re,{plotRef:t.plotRef,abscissaConfig:{visDomain:c.xRange,label:m(a.sampv,"lateral-axis"),flip:!0},ordinateConfig:{visDomain:c.yRange,label:m(a.sampu,"x-axis")},mouseMode:s,aspect:"equal",showAxes:t.config.displayAxes,children:[e.jsx(Ve,{ref:i,values:o,domain:t.imageDomain,colorMap:t.imageColorMap,invertColorMap:t.imageInvertColorMap,position:c.center,scale:c.scale,scaleType:t.imageScaleType,size:{width:o.shape[1],height:o.shape[0]}}),e.jsx(Ue,{guides:t.config.crossHair?"both":void 0,renderTooltip:(d,p)=>{var v;const x=(v=i.current)==null?void 0:v.pick(d,p);return e.jsx(jt,{px:d,py:p,pixel:x,inMotorSpace:c.inMotorSpace})}}),e.jsx(Qe,{centerX:c.center[0],centerY:c.center[1],width:c.width,height:c.height,color:"white",gapColor:"black",dashSize:5,gapSize:5,lineWidth:1}),c.inMotorSpace&&e.jsxs(e.Fragment,{children:[e.jsx(bt,{sampleStage:a}),e.jsx(wt,{sampleStage:a}),e.jsx(At,{sampleStage:a,viewRange:[c.xRange,c.yRange]})]}),e.jsx(Mt,{disabled:!n,requestMoveSampleAxisAtPosition:t.requestMoveSampleAxisAtPosition}),e.jsx(Ke,{unit:c.inMotorSpace?"mm":"px"})]})})}function Dt(t){const{fetchedResult:a}=t;return t.datacollectionid===void 0?e.jsx(z,{variant:"secondary",children:"Not yet datacollection"}):t.autoprocprogramid===void 0&&a.group===void 0?e.jsxs(z,{variant:"secondary",children:["Not yet reconstruction for datacollection ",t.datacollectionid]}):a.loading?e.jsx(z,{variant:"warning",children:"Waiting for data"}):a.error?e.jsxs(z,{variant:"danger",children:[e.jsx("p",{children:"Error during fetching:"}),e.jsx("p",{children:a.error})]}):t.parsingError?e.jsxs(z,{variant:"danger",children:[e.jsx("p",{children:"Data format unsupported:"}),e.jsx("p",{children:t.parsingError})]}):e.jsx(e.Fragment,{})}const Ft=le("daiquiri.components.tomo.TomoReconstructedSinogram");function Rt(t){var Z;const{options:a}=t,s=be(a.datacollectionid),o=y.useRef(),i=(s==null?void 0:s.datacollectionid)??void 0,n=we(),{uri:r,tomoconfig:l,events:h,...c}=a,m=ce(),g=y.useRef(null),d=Ne("zoom"),{mouseMode:p}=d,x=ut(),v=Ce(l??""),w=Ae(v),j=Xe(t.options.events);function M(){g.current&&g.current.actions.resetZoom()}const C=gt({type:"tomo-sinogram-reconstruction",datacollectionid:s.datacollectionid,datacollectiongroupid:s.datacollectiongroupid,event:j??void 0});y.useEffect(()=>()=>{o.current&&clearTimeout(o.current)},[]);const _=ct({datacollectionid:s.datacollectionid,autoprocprogramid:C,type:"processing",path:r,supportsFloat16Array:!0}),[u,de]=y.useMemo(()=>{try{return[xt(_.group),void 0]}catch(b){if(b instanceof I)return[null,b.message];throw b}},[_]);function ue(b,T){if(d.resetMouseMode(),u===null){Ft("Move cancelled: reconstructedInfo is null");return}const me=H(b,"mm"),fe=H(T,"mm");Ie({sampu:me,sampv:fe})}return Ye({statistics:u==null?void 0:u.stats,...x}),e.jsxs("div",{className:"plot2d-container w-100 h-100",style:{flex:"1 1 0%",display:"flex",flexDirection:"column"},children:[e.jsxs(ae,{align:"center",children:[e.jsx(pt,{reconstructionInfo:u,datacollectionid:i,actions:n}),e.jsx(Pe,{mouseModeInteraction:d}),e.jsx(P,{title:"Reset zoom (sample stage overview)",variant:"secondary",onClick:()=>{M()},children:e.jsx("i",{className:"fa fa-expand fa-fw fa-lg"})}),e.jsx(ze,{}),e.jsx(P,{title:m?"Move the motors to set rotation axis on the sample":"You have to get the control on the session to move motors",disabled:!m,variant:p==="move-sample-to-axis"?"danger":"secondary",onClick:()=>{d.setOrResetMouseMode("move-sample-to-axis")},children:e.jsx("i",{className:"fa fam-arrow-h-over-rot 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0&&G({datacollectionid:s.datacollectionid,axisposition:b,deltabeta:x.deltaBeta,filename:(u==null?void 0:u.sourceFilename)??void 0}),null)})})]}),e.jsxs(S,{className:"g-0 align-items-center",children:[e.jsx(f,{xs:"3",title:"Delta/beta ratio for the Paganin filter",children:"Delta/beta:"}),e.jsx(f,{xs:"9",children:e.jsx(ee,{hardwareValue:x.deltaBeta,hardwareIsDisabled:!1,onMoveRequested:b=>{var T;return x.setDeltaBeta(b),s.datacollectionid!==void 0&&G({datacollectionid:s.datacollectionid,axisposition:(T=u==null?void 0:u.axisPosition)==null?void 0:T.scalar,deltabeta:b,filename:(u==null?void 0:u.sourceFilename)??void 0}),null}})})]})]}),e.jsx(Dt,{datacollectionid:s.datacollectionid,autoprocprogramid:C,fetchedResult:_,parsingError:de}),e.jsx(_t,{config:x,imageColorMap:x.colorMap,imageInvertColorMap:x.invertColorMap,imageDomain:x.scaleDomain,imageScaleType:x.scaleType,reconstructedInfo:u,className:"flex-grow-1",sampleStage:w,mouseMode:p,plotRef:g,requestMoveSampleAxisAtPosition:ue})]})}function Nt(t){return e.jsx(Rt,{...t})}function ta(t){const{yamlNode:a,datacollectionid:s,uri:o,tomoconfig:i,events:n,...r}=t;Me(a,"events",n),te(a,"tomoconfig",i),te(a,"uri",o),_e(a,"datacollectionid",s),De(a,r);const l={datacollectionid:s,uri:o,tomoconfig:i,events:n};return e.jsx(Nt,{options:l})}export{ta as default};

daiquiri_ui/static/assets/TomoScanInfo-972a690b.js

@@ -0,0 +1 @@
+import{bq as L,r as j,j as t,aQ as R,br as v,o as k,bs as C,bt as m,bu as h,aD as E,bv as N,bw as D,l as w,H as q}from"./index-b3c0133a.js";import{g as I}from"./TomoScans-82e1e23b.js";function F(e,n){const r=L(e);j.useEffect(()=>{if(!n&&n!==0)return;const o=setInterval(()=>r.current(),n);return()=>clearInterval(o)},[n])}const T=R("daiquiri.components.tomo.TomoScanInfo");function b(e){return e==="tomo:dark"?["Dark","Acquire dark projection"]:e==="tomo:flat"?["Flat","Acquire flat projection"]:e==="tomo:return_ref"?["Return","Return to origin and acquiring few projection as reference"]:e==="tomo:step"?["Step scan","Tomo scan using rotation as step motor"]:e==="tomo:continuous"?["Continuous scan","Tomo scan using rotation as continuous motor"]:[e,"No description"]}function P(){const e=v();if(!e)return T("Skipped: lastgroup missing."),t.jsx(t.Fragment,{});const{subscans:n}=e;if(!n)return T("Skipped: subscans missing."),t.jsx(t.Fragment,{});const{activesubscan:r}=e;function o(s){return e?s<r?"DONE":s===r?e.state:"IDLE":""}const d=n.reduce((s,i)=>{const[a]=b(i);return s+a.length},0);function u(s,i,a){function x(S){return S.charAt(0).toUpperCase()+S.slice(1).toLowerCase()}const[f,l]=I(i),[c,p]=b(a),g=f==="RUNNING";return t.jsx(D,{animated:g,variant:l,label:`${x(c)}`,title:p,now:c.length,max:d},s)}return t.jsx(D,{children:w.map(n,(s,i)=>{const a=o(i);return u(i,a,s)})})}function Y(e){const[n,r]=j.useState(0);F(()=>{r(Date.now())},5e3);const o=j.useMemo(()=>{if(n<=0)return 0;const d=h(e.starttime),u=(n-d.getTime())/1e3;return u<0?0:u},[e.starttime,n]);return t.jsxs(t.Fragment,{children:[N(o)," ",t.jsx("i",{className:"fa-solid fa-spinner fa-spin-pulse"})]})}function $(e){const n=v(),r=k(C.get,n&&n?{datacollectionid:n.datacollectionid}:null);if(!n)return t.jsx(m,{children:t.jsx(m.Contents,{children:"No scan"})});const[o,d]=I(n.state);function u(f){const{subscans:l}=f;if(!l)return"";const{activesubscan:c}=f;if(c<0)return"Not yet started";if(c+1===l.length&&f.state!=="STARTING")return"Done";const p=l[c],[,g]=b(p);return`${c+1}/${l.length}: ${g}`}const{starttime:s,endtime:i,duration:a}=r??{},x=u(n);return t.jsx(m,{children:t.jsx(m.Contents,{children:t.jsxs("ul",{children:[n.datacollectionid&&t.jsxs("li",{children:[t.jsx("b",{children:"Data collection"}),": ",n.datacollectionid]}),t.jsxs("li",{children:[t.jsx("b",{children:"Scan"}),": ",n.scanid]}),t.jsxs("li",{children:[t.jsx("b",{children:"Start"}),":"," ",s?h(s).toLocaleTimeString():""]}),t.jsxs("li",{children:[t.jsx("b",{children:"Status"}),":"," ",t.jsx(E,{bg:d,title:`BLISS state: ${n.state}`,children:o})]}),t.jsxs("li",{children:[t.jsx("b",{children:"Progress"}),": ",t.jsx(P,{})]}),t.jsxs("li",{children:[t.jsx("b",{children:"Description"}),": ",x]}),i&&t.jsxs("li",{children:[t.jsx("b",{children:"End"}),": ",h(i).toLocaleTimeString()]}),s&&t.jsxs("li",{children:[t.jsx("b",{children:"Duration"}),":"," ",a?N(a):t.jsx(Y,{starttime:s})]})]})})})}function A(e){return t.jsx(j.Suspense,{fallback:"Loading...",children:t.jsx($,{...e})})}function U(e){const{providers:n,yamlNode:r,...o}=e;return q(r,o),t.jsx(A,{})}export{U as default};

daiquiri_ui/static/assets/{TomoScanList-66ecaec4.js → TomoScanList-ede05c2a.js}

@@ -1,4 +1,4 @@
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+import{aK as N,r as I,bx as tr,by as w,bz as mt,bA as ca,bB as Xt,bC as bt,bD as G,bE as da,bF as pa,bG as va,bH as fa,j as P,i as ga,aM as ma,O as ba,bI as ha,B as ht,bJ as ya,bK as Da,H as xa}from"./index-b3c0133a.js";var Zt=N.createContext(null);function Ia(e){e()}var Qt=Ia,Sa=function(r){return Qt=r},Ca=function(){return Qt};function wa(){var e=Ca(),r=null,t=null;return{clear:function(){r=null,t=null},notify:function(){e(function(){for(var i=r;i;)i.callback(),i=i.next})},get:function(){for(var i=[],a=r;a;)i.push(a),a=a.next;return i},subscribe:function(i){var a=!0,o=t={callback:i,next:null,prev:t};return o.prev?o.prev.next=o:r=o,function(){!a||r===null||(a=!1,o.next?o.next.prev=o.prev:t=o.prev,o.prev?o.prev.next=o.next:r=o.next)}}}}var yt={notify:function(){},get:function(){return[]}};function _t(e,r){var t,n=yt;function i(s){return u(),n.subscribe(s)}function a(){n.notify()}function o(){p.onStateChange&&p.onStateChange()}function l(){return!!t}function u(){t||(t=r?r.addNestedSub(o):e.subscribe(o),n=wa())}function d(){t&&(t(),t=void 0,n.clear(),n=yt)}var p={addNestedSub:i,notifyNestedSubs:a,handleChangeWrapper:o,isSubscribed:l,trySubscribe:u,tryUnsubscribe:d,getListeners:function(){return n}};return p}var en=typeof window<"u"&&typeof window.document<"u"&&typeof window.document.createElement<"u"?I.useLayoutEffect:I.useEffect;function Ea(e){var r=e.store,t=e.context,n=e.children,i=I.useMemo(function(){var l=_t(r);return{store:r,subscription:l}},[r]),a=I.useMemo(function(){return r.getState()},[r]);en(function(){var l=i.subscription;return l.onStateChange=l.notifyNestedSubs,l.trySubscribe(),a!==r.getState()&&l.notifyNestedSubs(),function(){l.tryUnsubscribe(),l.onStateChange=null}},[i,a]);var o=t||Zt;return N.createElement(o.Provider,{value:i},n)}var rn={exports:{}},T={};/** @license React v17.0.2
  * react-is.production.min.js
  *
  * Copyright (c) Facebook, Inc. and its affiliates.

daiquiri_ui/static/assets/TomoService-e9741d6a.js

@@ -0,0 +1 @@
+import{ai as l,X as i}from"./index-b3c0133a.js";function d(p){const{sz:t=null,sy:n=null,sampx:r=null,sampy:o=null,sampu:e=null,sampv:s=null}=p,a=new URL(`${l()}/tomo/move`);n&&a.searchParams.append("sy",n.toString()),t&&a.searchParams.append("sz",t.toString()),r&&a.searchParams.append("sampx",r.toString()),o&&a.searchParams.append("sampy",o.toString()),e&&a.searchParams.append("sampu",e.toString()),s&&a.searchParams.append("sampv",s.toString()),a.searchParams.append("relative","false");const c=new XMLHttpRequest;c.open("GET",a.href,!0),i.token&&c.setRequestHeader("Authorization",`Bearer ${i.token}`),c.send()}function u(p){const{datacollectionid:t,axisposition:n,deltabeta:r,filename:o}=p;if(t===void 0)return;const e=new URL(`${l()}/tomo/slice_reconstruction`);t!==void 0&&e.searchParams.append("datacollectionid",t.toString()),n!==void 0&&e.searchParams.append("axisposition",n.toString()),r!==void 0&&e.searchParams.append("deltabeta",r.toString()),o!==void 0&&e.searchParams.append("filename",o);const s=new XMLHttpRequest;s.open("GET",e.href,!0),i.token&&s.setRequestHeader("Authorization",`Bearer ${i.token}`),s.send()}export{u as a,d as r};