daiquiri-ui 2025.12.1__py3-none-any.whl → 2026.2.0__py3-none-any.whl

daiquiri_ui/static/assets/TomoReconstructedSinogram-53bbfb3b.js

@@ -1,191 +0,0 @@
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e.jsx(ve,{trigger:["hover","focus"],placement:"bottom",overlay:o,children:e.jsx(P,{variant:"secondary",disabled:s===null,children:e.jsx("i",{className:"fa-solid fa-info fa-fw fa-lg"})})},"arg")}function yt(t){function a(o,i){return Math.round(o)===o?o.toFixed(0):o.toFixed(i)}const s=4;return e.jsxs(L,{style:{width:"150px"},children:[e.jsxs(S,{children:[e.jsx(f,{xs:3,children:"u"}),e.jsx(f,{xs:8,children:t.py.toFixed(s)}),e.jsx(f,{xs:1,children:t.inMotorSpace?"mm":"px"})]}),e.jsxs(S,{children:[e.jsx(f,{xs:3,children:"v"}),e.jsx(f,{xs:8,children:t.px.toFixed(s)}),e.jsx(f,{xs:1,children:t.inMotorSpace?"mm":"px"})]}),t.pixel&&e.jsxs(S,{children:[e.jsx(f,{xs:3,children:"pixel"}),e.jsx(f,{xs:8,children:a(t.pixel,s)}),e.jsx(f,{xs:1})]})]})}class jt extends ie{constructor(){super({uniforms:{color:{value:new K},gapColor:{value:new K},radius:{value:0},dashSize:{value:0},gapSize:{value:0},scaleX:{value:0},scaleY:{value:0},lineWidth:{value:0}},vertexShader:`
-uniform float scaleX; // signed scale
-uniform float scaleY; // signed scale
-out vec2 pixelCoord;
-// out vec2 dataCoord;
-
-void main() {
-    gl_Position = projectionMatrix * modelViewMatrix * vec4(position, 1.0);
-    vec2 pixelScale = abs(vec2(scaleX, scaleY));
-    // dataCoord = vec2(position.x, position.y);
-    pixelCoord = vec2(position.x, position.y) / pixelScale;
-}
-      `,fragmentShader:`
-uniform vec4 color;
-uniform vec4 gapColor;
-uniform float gapSize;
-uniform float dashSize;
-uniform float lineWidth;
-uniform float scaleX; // signed scale
-uniform float scaleY; // signed scale
-uniform float radius;
-in vec2 pixelCoord;
-
-const float M_PI = 3.1415926535897932384626433832795;
-const float AA_DASH = 0.5;
-
-/**
- * Antialiasing following the line of dash and gap
- */
-vec4 aa_dash_gap(float dist, float alpha) {
-  dist = mod(dist, (dashSize + gapSize));
-  float sd1 = (dist < dashSize) ? dist : dist - (dashSize + gapSize);
-  float sd2 = -(dist - dashSize);
-  if (abs(sd1) <= AA_DASH || abs(sd2) <= AA_DASH) {
-    if (abs(sd1) < abs(sd2)) {
-      float c = (sd1 + AA_DASH) * (0.5 / AA_DASH);
-      return (
-        vec4(color.r, color.g, color.b, alpha * color.a) * c
-        + vec4(gapColor.r, gapColor.g, gapColor.b, alpha * gapColor.a) * (1.0 - c)
-      );
-    } else {
-      float c = (sd2 + AA_DASH) * (0.5 / AA_DASH);
-      return (
-        vec4(color.r, color.g, color.b, alpha * color.a) * c
-        + vec4(gapColor.r, gapColor.g, gapColor.b, alpha * gapColor.a) * (1.0 - c)
-      );
-    }
-  }
-  if (dist <= dashSize) {
-      return vec4(color.r, color.g, color.b, alpha * color.a);
-  }
-  return vec4(gapColor.r, gapColor.g, gapColor.b, alpha * gapColor.a);
-}
-
-void main() {
-    float r = length(pixelCoord);
-    float s = (abs(scaleX) + abs(scaleY)) * 0.5;
-    float d = abs(r - radius / s) - lineWidth * 0.5;
-    if (d > 1.5) {
-      discard;
-    }
-    float alpha;
-    if (lineWidth >= 1.0) {
-        alpha = smoothstep(0.25, 0.0, d);
-    } else {
-        // simulate line thiner than 1px with alpha
-        alpha = lineWidth;
-    }
-
-    if (dashSize == 0.0) {
-        gl_FragColor = vec4(color.r, color.g, color.b, alpha * color.a);
-        return;
-    }
-
-    // try to fit a fixed integer number of dashes + gaps
-    // could be computed in the vertex shader
-    float full = 2.0 * M_PI * (radius / s) / (dashSize + gapSize);
-    float coef = ceil(full) / full;
-
-    float dist = 2.0 * atan(pixelCoord.y, pixelCoord.x) * (radius / s) * coef;
-    gl_FragColor = aa_dash_gap(dist, alpha);
-}
-      `})}}oe({CircleDashMaterial:jt});function Y(t){const{center:a,radius:s,lineWidth:o=1,color:i="black",gapColor:n,dashSize:r=0,gapSize:l=r,opacity:h=1,zIndex:c=0}=t,m=v.useRef(null),g=Be();return v.useEffect(()=>{const d=Q(i,h),p=Q(n??"transparent",h);if(m.current){const x=m.current.uniforms;x.color.value=d,x.radius.value=s,x.gapColor.value=p,x.dashSize.value=r,x.gapSize.value=l,x.lineWidth.value=o,ne()}},[i,s,n,r,l,h,o]),ye(({camera:d})=>{if(m.current===null)return;const p=d.scale.x/g.sx,x=d.scale.y/g.sy,y=m.current.uniforms;y.scaleX.value=p,y.scaleY.value=x}),e.jsx("group",{position:[a[0],a[1],c],children:e.jsxs("mesh",{children:[e.jsx("ambientLight",{}),e.jsx("planeGeometry",{attach:"geometry",args:[(s+o)*2,(s+o)*2,1,1]}),e.jsx("circleDashMaterial",{attach:"material",transparent:!0,ref:m})]})})}function St(t){const{sampleStage:a}=t,s=a.sampu?A(a.sampu):null,o=a.sampv?A(a.sampv):null,{tomoDetector:i,detector:n}=a;if(i===null||n===null||s===null||o===null)return e.jsx(e.Fragment,{});const r=Qe(i,n);if(r===null)return e.jsx(e.Fragment,{});const l=new I(o,s),h=r[0]*.5,c=r[0];function m(){const d=a.sy?A(a.sy):null;return d===null||r===null?null:r[0]*.5+Math.abs(d)}const g=m();return e.jsxs(e.Fragment,{children:[e.jsx(Y,{center:[l.x,l.y],radius:h,color:"#000000",gapColor:"#FF0000",opacity:.5,dashSize:5,gapSize:5,lineWidth:1}),e.jsx(W,{datapos:[l.x-h*.95,l.y-h*.35],color:"#FF0000",text:"Full"}),e.jsx(Y,{center:[l.x,l.y],radius:c,color:"#000000",gapColor:"#FF0000",opacity:.5,dashSize:5,gapSize:5,lineWidth:1}),e.jsx(W,{datapos:[l.x-c*.95,l.y-c*.35],color:"#FF0000",text:"Half"}),g!==null&&e.jsxs(e.Fragment,{children:[e.jsx(Y,{center:[l.x,l.y],radius:g,color:"#000000",gapColor:"#FF0000",dashSize:5,gapSize:5,lineWidth:1}),e.jsx(W,{datapos:[l.x-g,l.y-g*.175],color:"#FF0000",text:"Actual region"})]})]})}function bt(t){const{sampleStage:a}=t,s=a.sampu?A(a.sampu):null,o=a.sampv?A(a.sampv):null;return(a.sy?A(a.sy):null)===null||s===null||o===null?e.jsx(e.Fragment,{}):e.jsxs(e.Fragment,{children:[e.jsx(Je,{x:o,y:s,color:"red",sizeInScreen:30,lineWidth:2.5}),e.jsx(W,{datapos:[o,s],color:"#FF0000",anchor:"top-right",text:"Actual axis position"})]})}class wt extends ie{constructor(){super({uniforms:{color:{value:new K},lineWidth:{value:0},sizeInScreen:{value:0},angle:{value:0}},vertexShader:`
-out vec2 pixelCoord;
-
-void main() {
-    gl_Position = projectionMatrix * modelViewMatrix * vec4(position, 1.0);
-    pixelCoord = vec2(position.x, position.y);
-}
-      `,fragmentShader:`
-// Based on antialiased arrow fields
-// Nicolas P. Rougier (http://www.loria.fr/~rougier)
-// https://www.shadertoy.com/view/ldlSWj
-// Released under BSD license.
-
-uniform vec4 color;
-uniform float lineWidth;
-uniform float sizeInScreen;
-uniform float angle;
-in vec2 pixelCoord;
-
-// Computes the signed distance from a line
-float sdf_line(vec2 p, vec2 p1, vec2 p2) {
-    vec2 center = (p1 + p2) * 0.5;
-    float len = length(p2 - p1);
-    vec2 dir = (p2 - p1) / len;
-    vec2 rel_p = p - center;
-    return dot(rel_p, vec2(dir.y, -dir.x));
-}
-
-// Computes the signed distance from a line segment
-float sdf_segment(vec2 p, vec2 p1, vec2 p2) {
-    vec2 center = (p1 + p2) * 0.5;
-    float len = length(p2 - p1);
-    vec2 dir = (p2 - p1) / len;
-    vec2 rel_p = p - center;
-    float dist1 = abs(dot(rel_p, vec2(dir.y, -dir.x)));
-    float dist2 = abs(dot(rel_p, dir)) - 0.5*len;
-    return max(dist1, dist2);
-}
-
-float sdf_arrow(vec2 texcoord,
-  float body, float head, float height,
-  float linewidth, float antialias
-) {
-  float d;
-  float w = linewidth/2.0 + antialias;
-  vec2 start = -vec2(body / 2.0, 0.0);
-  vec2 end   = +vec2(body / 2.0, 0.0);
-
-  // Arrow tip (beyond segment end)
-  if( texcoord.x > body / 2.0) {
-    // Head : 2 segments
-    float d1 = sdf_line(texcoord, end, end - head*vec2(+1.0, -height));
-    float d2 = sdf_line(texcoord, end - head*vec2(+1.0, +height), end);
-    // Body : 1 segment
-    float d3 = end.x - texcoord.x;
-    d = max(max(d1, d2), d3);
-  } else {
-    // Head : 2 segments
-    float d1 = sdf_segment(texcoord, end - head * vec2(+1.0, -height), end);
-    float d2 = sdf_segment(texcoord, end - head * vec2(+1.0, +height), end);
-    // Body : 1 segment
-    float d3 = sdf_segment(texcoord, start, end - vec2(linewidth, 0.0));
-    d = min(min(d1, d2), d3);
-  }
-  return d;
-}
-
-vec4 filled(float distance, float linewidth, float antialias, vec4 fill)
-{
-    vec4 frag_color;
-    float t = linewidth / 2.0 - antialias;
-    float signed_distance = distance;
-    float border_distance = abs(signed_distance) - t;
-    float alpha = border_distance / antialias;
-    alpha = exp(-alpha * alpha);
-
-    // Within linestroke
-    if (border_distance < 0.0) {
-        return fill;
-    }
-    // Within shape
-    if (signed_distance < 0.0) {
-      return fill;
-    }
-    // Outside shape
-    if (border_distance > (linewidth / 2.0 + antialias)) {
-        discard;
-    }
-    // Line stroke exterior border
-    return vec4(fill.rgb, alpha);
-}
-
-void main() {
-    const float M_PI = 3.1415926535897932384626433832795;
-
-    float theta = angle * M_PI / 180.0;
-    float cos_theta = cos(theta);
-    float sin_theta = sin(theta);
-    vec2 pixelCoord2 = vec2(
-      cos_theta * pixelCoord.x - sin_theta * pixelCoord.y,
-      sin_theta * pixelCoord.x + cos_theta * pixelCoord.y
-    );
-
-    const float antialias = 1.0;
-    float body = sizeInScreen;
-    float d = sdf_arrow(pixelCoord2, body, 0.30 * body, 0.8, lineWidth, antialias);
-    gl_FragColor = filled(d, lineWidth, antialias, color);
-}
-    `})}}oe({ArrowMarkerMaterial:wt});function X(t){const{x:a,y:s,color:o="black",opacity:i,sizeInScreen:n,angle:r,lineWidth:l=1,zIndex:h=0}=t,c=v.useRef(null);return v.useEffect(()=>{const m=Q(o,i);if(c.current){const g=c.current.uniforms;g.color.value=m,g.lineWidth.value=l,g.sizeInScreen.value=n,g.angle.value=r,ne()}},[o,i,l,n,r]),e.jsx("group",{position:[a,s,h],children:e.jsx(et,{screenDirection:!1,children:e.jsxs("mesh",{children:[e.jsx("ambientLight",{}),e.jsx("planeGeometry",{attach:"geometry",args:[n+l,n+l,1,1]}),e.jsx("arrowMarkerMaterial",{attach:"material",transparent:!0,ref:c})]})})})}function Ct(t){const{sampleStage:a}=t,s=a.sampu?A(a.sampu):null,o=a.sampv?A(a.sampv):null,i=a.somega?-Ze(a.somega):null;if(i===null||s===null||o===null)return e.jsx(e.Fragment,{});const n=i/Math.PI*180,r=(t.viewRange[0][1]-t.viewRange[0][0])*.5+(t.viewRange[1][1]-t.viewRange[1][0])*.5,l=new I(0,1).rotateAround(new I(0,0),i),h=new I(-l.y,l.x).multiplyScalar(.3*r),m=new I(o,s).clone().add(l.clone().multiplyScalar(.375*r)),g=m.clone().add(h),d=m,p=m.clone().sub(h);return e.jsxs(e.Fragment,{children:[e.jsx(X,{x:g.x,y:g.y,sizeInScreen:80,angle:90-n,color:"red",lineWidth:3}),e.jsx(X,{x:d.x,y:d.y,sizeInScreen:80,angle:90-n,color:"red",lineWidth:3}),e.jsx(X,{x:p.x,y:p.y,sizeInScreen:80,angle:90-n,color:"red",lineWidth:3}),e.jsx(W,{datapos:[d.x,d.y],color:"#FF0000",text:"Beam",anchor:"bottom"})]})}const se=re("daiquiri.components.tomo.reconstructedslice.MoveMotorInteraction");function At(t){const a=De(),{mouseMode:s}=a??{},{disabled:o,requestMoveSampleAxisAtPosition:i}=t,n=v.useCallback(r=>{const l=r.dataPt.x,h=r.dataPt.y;i(h,l)},[i]);return o||s!=="move-sample-to-axis"?(se("MoveMotorInteraction disabled."),e.jsx(e.Fragment,{})):(se("MoveMotorInteraction enabled."),e.jsx(tt,{onClick:n}))}function Mt(t){var g;const{sampleStage:a,mouseMode:s}=t,o=(g=t.reconstructedInfo)==null?void 0:g.imageArray,i=v.useRef(null),n=le();if(!t.reconstructedInfo||o===void 0)return e.jsx(e.Fragment,{});const l=(a.somega!==null?je(a.somega):!0)?1:-1;function h(d){const p=(o==null?void 0:o.shape[1])??0,x=(o==null?void 0:o.shape[0])??0;if(d.samplePixelSize===null||d.sampxPosition===null||d.sampyPosition===null||d.imageArray===null)return{inMotorSpace:!1,xRange:[0,x],yRange:[0,p],center:[p/2,x/2,0],scale:[1,1,1],height:x,width:p};const y=d.samplePixelSize.to("mm").scalar,w=d.sampxPosition.to("mm").scalar,j=d.sampyPosition.to("mm").scalar,M=d.imageArray.shape[1]*.5,C=d.imageArray.shape[0]*.5;return{inMotorSpace:!0,xRange:[j-M*y,j+M*y],yRange:[w-C*y,w+C*y],center:[j,w,0],scale:[-y,-l*y,1],width:M*y*2,height:C*y*2}}const c=h(t.reconstructedInfo);function m(d,p){return d===null||!c.inMotorSpace?`${p} (px)`:`${d.alias??d.name} (mm)`}return e.jsx("div",{style:{flex:"1 1 auto",display:"flex",margin:0,minHeight:0},className:t.className,children:e.jsxs(Fe,{plotRef:t.plotRef,abscissaConfig:{visDomain:c.xRange,label:m(a.sampv,"lateral-axis"),flip:!0},ordinateConfig:{visDomain:c.yRange,label:m(a.sampu,"x-axis")},mouseMode:s,aspect:"equal",showAxes:t.config.displayAxes,children:[e.jsx(Oe,{ref:i,values:o,domain:t.imageDomain,colorMap:t.imageColorMap,invertColorMap:t.imageInvertColorMap,position:c.center,scale:c.scale,scaleType:t.imageScaleType,size:{width:o.shape[1],height:o.shape[0]}}),e.jsx(Xe,{guides:t.config.crossHair?"both":void 0,renderTooltip:(d,p)=>{var y;const x=(y=i.current)==null?void 0:y.pick(d,p);return e.jsx(yt,{px:d,py:p,pixel:x,inMotorSpace:c.inMotorSpace})}}),e.jsx(Ue,{centerX:c.center[0],centerY:c.center[1],width:c.width,height:c.height,color:"white",gapColor:"black",dashSize:5,gapSize:5,lineWidth:1}),c.inMotorSpace&&e.jsxs(e.Fragment,{children:[e.jsx(St,{sampleStage:a}),e.jsx(bt,{sampleStage:a}),e.jsx(Ct,{sampleStage:a,viewRange:[c.xRange,c.yRange]})]}),e.jsx(At,{disabled:!n,requestMoveSampleAxisAtPosition:t.requestMoveSampleAxisAtPosition}),e.jsx(Ke,{unit:c.inMotorSpace?"mm":"px"})]})})}function _t(t){const{fetchedResult:a}=t;return t.datacollectionid===void 0?e.jsx(z,{variant:"secondary",children:"Not yet datacollection"}):t.autoprocprogramid===void 0&&a.group===void 0?e.jsxs(z,{variant:"secondary",children:["Not yet reconstruction for datacollection ",t.datacollectionid]}):a.loading?e.jsx(z,{variant:"warning",children:"Waiting for data"}):a.error?e.jsxs(z,{variant:"danger",children:[e.jsx("p",{children:"Error during fetching:"}),e.jsx("p",{children:a.error})]}):t.parsingError?e.jsxs(z,{variant:"danger",children:[e.jsx("p",{children:"Data format unsupported:"}),e.jsx("p",{children:t.parsingError})]}):e.jsx(e.Fragment,{})}const Dt=re("daiquiri.components.tomo.TomoReconstructedSinogram");function Ft(t){var Z;const{options:a}=t,s=Se(a.datacollectionid),o=v.useRef(),i=(s==null?void 0:s.datacollectionid)??void 0,n=be(),{uri:r,tomoconfig:l,events:h,...c}=a,m=le(),g=v.useRef(null),d=Ne("zoom"),{mouseMode:p}=d,x=dt(),y=we(l??""),w=Ce(y),j=Ye(t.options.events);function M(){g.current&&g.current.actions.resetZoom()}const C=xt({type:"tomo-sinogram-reconstruction",datacollectionid:s.datacollectionid,datacollectiongroupid:s.datacollectiongroupid,event:j??void 0});v.useEffect(()=>()=>{o.current&&clearTimeout(o.current)},[]);const _=lt({datacollectionid:s.datacollectionid,autoprocprogramid:C,type:"processing",path:r,supportsFloat16Array:!0}),[u,ce]=v.useMemo(()=>{try{return[ht(_.group),void 0]}catch(b){if(b instanceof k)return[null,b.message];throw b}},[_]);function de(b,E){if(d.resetMouseMode(),u===null){Dt("Move cancelled: reconstructedInfo is null");return}const ue=T(b,"mm"),me=T(E,"mm");Ie({sampu:ue,sampv:me})}return Ge({statistics:u==null?void 0:u.stats,...x}),e.jsxs("div",{className:"plot2d-container w-100 h-100",style:{flex:"1 1 0%",display:"flex",flexDirection:"column"},children:[e.jsxs(te,{align:"center",children:[e.jsx(gt,{reconstructionInfo:u,datacollectionid:i,actions:n}),e.jsx(Re,{mouseModeInteraction:d}),e.jsx(P,{title:"Reset zoom (sample stage overview)",variant:"secondary",onClick:()=>{M()},children:e.jsx("i",{className:"fa fa-expand fa-fw fa-lg"})}),e.jsx(Pe,{}),e.jsx(P,{title:m?"Move the motors to set rotation axis on the sample":"You have to get the control on the session to move motors",disabled:!m,variant:p==="move-sample-to-axis"?"danger":"secondary",onClick:()=>{d.setOrResetMouseMode("move-sample-to-axis")},children:e.jsx("i",{className:"fa fam-arrow-h-over-rot fa-fw fa-lg"})}),e.jsx(nt,{name:"Worker",description:"Automatic slice reconstruction from sinogram",datacollectionid:s.datacollectionid,programs:"tomo-sinogram-reconstruction",providers:{metadata:{autoprocprograms:{namespace:"tomosinogramreconstruction"}}}}),e.jsx(pt,{datacollectionid:s.datacollectionid,sourceFilename:(u==null?void 0:u.sourceFilename)??void 0,actions:{requestSliceReconstruction:G}})]}),e.jsxs(te,{align:"center",children:[e.jsx(Ve,{disabled:(u==null?void 0:u.stats)===void 0,...x}),e.jsx(ke,{disabled:u===void 0,histogram:u==null?void 0:u.histogram,...x}),e.jsx(vt,{fetchedResult:_,reconstructedInfo:u}),e.jsx(ft,{config:x})]}),e.jsxs(L,{children:[e.jsxs(S,{className:"g-0 align-items-center",children:[e.jsx(f,{xs:"3",title:"Location of the rotation axis from the left side of the sinogram (in pixel)",children:"Axis position:"}),e.jsx(f,{xs:"9",children:e.jsx(J,{hardwareValue:((Z=u==null?void 0:u.axisPosition)==null?void 0:Z.scalar)??0,hardwareIsDisabled:u===null,onMoveRequested:b=>(s.datacollectionid!==void 0&&G({datacollectionid:s.datacollectionid,axisposition:b,deltabeta:x.deltaBeta,filename:(u==null?void 0:u.sourceFilename)??void 0}),null)})})]}),e.jsxs(S,{className:"g-0 align-items-center",children:[e.jsx(f,{xs:"3",title:"Delta/beta ratio for the Paganin filter",children:"Delta/beta:"}),e.jsx(f,{xs:"9",children:e.jsx(J,{hardwareValue:x.deltaBeta,hardwareIsDisabled:!1,onMoveRequested:b=>{var E;return x.setDeltaBeta(b),s.datacollectionid!==void 0&&G({datacollectionid:s.datacollectionid,axisposition:(E=u==null?void 0:u.axisPosition)==null?void 0:E.scalar,deltabeta:b,filename:(u==null?void 0:u.sourceFilename)??void 0}),null}})})]})]}),e.jsx(_t,{datacollectionid:s.datacollectionid,autoprocprogramid:C,fetchedResult:_,parsingError:ce}),e.jsx(Mt,{config:x,imageColorMap:x.colorMap,imageInvertColorMap:x.invertColorMap,imageDomain:x.scaleDomain,imageScaleType:x.scaleType,reconstructedInfo:u,className:"flex-grow-1",sampleStage:w,mouseMode:p,plotRef:g,requestMoveSampleAxisAtPosition:de})]})}function Nt(t){return e.jsx(Ft,{...t})}function Jt(t){const{yamlNode:a,datacollectionid:s,uri:o,tomoconfig:i,events:n,...r}=t;Ae(a,"events",n),ee(a,"tomoconfig",i),ee(a,"uri",o),Me(a,"datacollectionid",s),_e(a,r);const l={datacollectionid:s,uri:o,tomoconfig:i,events:n};return e.jsx(Nt,{options:l})}export{Jt as default};

daiquiri_ui/static/assets/TomoScanInfo-5ca06333.js

@@ -1 +0,0 @@
-import{bg as I,r as g,bh as v,bi as k,j as t,bj as m,bk as h,au as E,bl as N,aL as R,bm as D,l as C,q}from"./index-0751d893.js";import{g as L}from"./TomoScans-82e1e23b.js";function w(e,n){const r=I(e);g.useEffect(()=>{if(!n&&n!==0)return;const o=setInterval(()=>r.current(),n);return()=>clearInterval(o)},[n])}const T=R("daiquiri.components.tomo.TomoScanInfo");function b(e){return e==="tomo:dark"?["Dark","Acquire dark projection"]:e==="tomo:flat"?["Flat","Acquire flat projection"]:e==="tomo:return_ref"?["Return","Return to origin and acquiring few projection as reference"]:e==="tomo:step"?["Step scan","Tomo scan using rotation as step motor"]:e==="tomo:continuous"?["Continuous scan","Tomo scan using rotation as continuous motor"]:[e,"No description"]}function F(){const e=v();if(!e)return T("Skipped: lastgroup missing."),t.jsx(t.Fragment,{});const{subscans:n}=e;if(!n)return T("Skipped: subscans missing."),t.jsx(t.Fragment,{});const{activesubscan:r}=e;function o(s){return e?s<r?"DONE":s===r?e.state:"IDLE":""}const f=n.reduce((s,i)=>{const[a]=b(i);return s+a.length},0);function l(s,i,a){function j(S){return S.charAt(0).toUpperCase()+S.slice(1).toLowerCase()}const[c,d]=L(i),[u,x]=b(a),p=c==="RUNNING";return t.jsx(D,{animated:p,variant:d,label:`${j(u)}`,title:x,now:u.length,max:f},s)}return t.jsx(D,{children:C.map(n,(s,i)=>{const a=o(i);return l(i,a,s)})})}function P(e){const[n,r]=g.useState(0);w(()=>{r(Date.now())},5e3);const o=g.useMemo(()=>{if(n<=0)return 0;const f=h(e.starttime),l=(n-f.getTime())/1e3;return l<0?0:l},[e.starttime,n]);return t.jsxs(t.Fragment,{children:[N(o)," ",t.jsx("i",{className:"fa-solid fa-spinner fa-spin-pulse"})]})}function Y(e){const n=v(),r=k(c=>{if(n)return c.metadata.ns_datacollections.default.results[n.datacollectionid]});if(!n)return t.jsx(m,{children:t.jsx(m.Contents,{children:"No scan"})});const[o,f]=L(n.state);function l(c){const{subscans:d}=c;if(!d)return"";const{activesubscan:u}=c;if(u<0)return"Not yet started";if(u+1===d.length&&c.state!=="STARTING")return"Done";const x=d[u],[,p]=b(x);return`${u+1}/${d.length}: ${p}`}const{starttime:s,endtime:i,duration:a}=r??{},j=l(n);return t.jsx(m,{children:t.jsx(m.Contents,{children:t.jsxs("ul",{children:[n.datacollectionid&&t.jsxs("li",{children:[t.jsx("b",{children:"Data collection"}),": ",n.datacollectionid]}),t.jsxs("li",{children:[t.jsx("b",{children:"Scan"}),": ",n.scanid]}),t.jsxs("li",{children:[t.jsx("b",{children:"Start"}),":"," ",s?h(s).toLocaleTimeString():""]}),t.jsxs("li",{children:[t.jsx("b",{children:"Status"}),":"," ",t.jsx(E,{bg:f,title:`BLISS state: ${n.state}`,children:o})]}),t.jsxs("li",{children:[t.jsx("b",{children:"Progress"}),": ",t.jsx(F,{})]}),t.jsxs("li",{children:[t.jsx("b",{children:"Description"}),": ",j]}),i&&t.jsxs("li",{children:[t.jsx("b",{children:"End"}),": ",h(i).toLocaleTimeString()]}),s&&t.jsxs("li",{children:[t.jsx("b",{children:"Duration"}),":"," ",a?N(a):t.jsx(P,{starttime:s})]})]})})})}function B(e){const{providers:n,yamlNode:r,...o}=e;return q(r,o),t.jsx(Y,{})}export{B as default};

daiquiri_ui/static/assets/TomoSinogram-ecd9dca2.js

@@ -1 +0,0 @@
-import{j as e,r as f,an as I,aL as P,ay as S,aU as R,g as J,R as V,C as y,aj as q,B as k,ba as Q,bb as ee,u as ae,aX as te,aY as oe,A as se,bB as U,bC as ne,q as G,a1 as re,be as ie}from"./index-0751d893.js";import{S as A,a as K,n as le,p as ce,F as de,r as ue}from"./index-a0f7b98c.js";import{L as me,b as xe,u as ge,T as fe,D as pe,S as H}from"./UseMouseModeInteraction-fc86164b.js";import{V as Y}from"./VSegment-cf1ceafc.js";import{L as N}from"./Label-3c95fb14.js";import{l as L}from"./hooks-457bfe32.js";import{L as he}from"./LoadingMessage-e1e479c5.js";import{W as je}from"./WorldScale-6e6ac5b5.js";import{V as ve,u as ye}from"./VLineRoi-5130fa5a.js";import{D as Ce}from"./DropdownButton-d066ece0.js";import{P as Se}from"./SelectionPoint-d30865f3.js";import{H as be,a as Me}from"./HSegment-8966b13f.js";import"./colors-2395de5a.js";import"./ScreenScale-ae820d30.js";import"./DraggableRect-db33e02e.js";import"./types-46afffa0.js";const D=.1;function we(t,a){if(!t)return{translationrange:A([0,1024],D),rotationrange:A([0,360],D)};const{rotationrange:s,translationrange:o}=t;if(a==="marker")return{translationrange:A(o,D),rotationrange:A(s,D)};if(a==="solid"){const{rotationaxispoints:r}=t,n=Math.abs(s[1]-s[0])/r;return{translationrange:o,rotationrange:[s[0]-n/2,s[1]-n/2]}}throw new Error(`Expected "marker" or "solid" render mode. 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n=(e.rotation+e.projRotation)/180*Math.PI,{x:o,y:s,fov:a}=e,i=Math.abs(Math.cos(n)*a[0]*.5),l=a[1]*.5,r=[o-a[0]*.5,s-a[1]*.5],c=[o+a[0]*.5,s+a[1]*.5],u=t.jsx(t.Fragment,{children:t.jsx(le,{startPoint:r,endPoint:c,lineColor:T.danger,gapColor:T.light,dashSize:4,gapSize:4,lineWidth:1,zIndex:2})});return i<.001?t.jsxs(t.Fragment,{children:[u,t.jsx(ye,{x:o,y1:s-l,y2:s+l,color:T.danger,lineWidth:2,zIndex:2})]}):t.jsxs(t.Fragment,{children:[u,t.jsx(le,{startPoint:[o-i,s-l],endPoint:[o+i,s+l],lineColor:T.danger,lineWidth:2,zIndex:2})]})}function oo(e){const{xAxisDelta:n,y:o,fov:s,detectorX:a}=e,i=s?s[1]*.5:50;function l(h){const{startPoint:f,endPoint:y}=h;return t.jsx(ye,{x:f.x,y1:f.y,y2:y.y,dashSize:8,gapSize:4,color:T.danger,gapColor:T.light})}const r=a+n;if(s===null){const h=new k(r,o-i),f=new k(r,o+i);return t.jsxs(t.Fragment,{children:[t.jsx(Y,{datapos:[r+1,o-i],color:T.danger,text:"Axis"}),t.jsx(l,{startPoint:h,endPoint:f})]})}if(Math.abs(n)*2>s[0]){const h=s[0]*.5,f=new k(r,o-h-i),y=new k(r,o+h+i);return t.jsxs(t.Fragment,{children:[t.jsx(Y,{datapos:[r+1,o-i],color:T.danger,text:"Axis"}),t.jsx(l,{startPoint:f,endPoint:y})]})}const c=s[1]*.5,u=new k(r,o-c),m=new k(r,o-c-i),d=new k(r,o+c),x=new k(r,o+c+i);return t.jsxs(t.Fragment,{children:[t.jsx(Y,{datapos:[r+1,o-c-i],color:T.danger,text:"Axis"}),t.jsx(l,{startPoint:u,endPoint:m}),t.jsx(l,{startPoint:d,endPoint:x})]})}function so(e){const{tomoHardware:n}=e,{sy:o,sz:s,somega:a,sampu:i,sampv:l,tomoDetector:r,detector:c,sampleStage:u}=n;if(o===null||s===null)return to("Skipped: one of sy, sz is missing."),t.jsx(t.Fragment,{});function m(I){if(I===null)return null;const{position:R}=I.properties;if(R===null)return R;const _=St(I)?1:-1;return R*_}const d=(u==null?void 0:u.properties.detector_center)??[0,0],x=d[0]??0,h=d[1]??0,f=K(s),y=X(i)??0,v=X(l)??0,b=K(o),p=m(a),j=te(r,c);function M(){const I=e.projRotation*Math.PI/180;return-Math.sin(I)*y+Math.cos(I)*v+b}const S=M()-x,C=f-h,D=b-x;return t.jsxs(t.Fragment,{children:[t.jsx(Vn,{x:S,y:C,color:T.danger,sizeInScreen:20,lineWidth:2,zIndex:2}),t.jsx(Y,{datapos:[S-(j?j[0]*.5:0)+1,C-(j?j[1]*.5:0)],color:T.danger,text:(c==null?void 0:c.name)??"Detector"}),p!==null&&j!==null&&t.jsx(no,{x:S,y:C,fov:j,rotation:p,projRotation:e.projRotation}),t.jsx(oo,{xAxisDelta:D,y:C,fov:j,detectorX:S})]})}function Ve(e,n){if(e===null||n===null)return null;const o=e.properties.sample_pixel_size,s=n.properties.size;if(s===null||o===null)return null;const a=o/1e3;return[s[0]*a,s[1]*a]}function Rt(e,n){const{sy:o,sz:s,sampu:a,sampv:i,tomoDetector:l,detector:r}=e;if(s===null)return{motorBox:new O,visibleBox:new O,maxBox:new O};const c=n*Math.PI/180,u=o?K(o):0,[m,d]=he(o),[x,h]=he(a),[f,y]=he(i),[v,b]=he(s),p=-Math.sin(c)*x+Math.cos(c)*f+u,j=-Math.sin(c)*h+Math.cos(c)*y+u,M=Ve(l,r),[S,C]=M||[0,0],{sampleStage:D}=e,I=(D==null?void 0:D.properties.detector_center)??[0,0],R=I[0]??0,_=I[1]??0,$=new O().setFromPoints([new w(p-R,v-_),new w(j-R,b-_)]),B=$.clone().expandByVector(new w(S*.5,C*.5)),z=new O().setFromPoints([new w(x+f+m-R,v-_),new w(h+y+d-R,b-_)]).expandByVector(new w(S*.5,C*.5));return{motorBox:$,visibleBox:B,maxBox:z}}function Se(e){const{sz:n,sampu:o,sampv:s}=e;if(n===null)return;const a=X(o)??0,i=X(s)??0,l=K(n),{sampleStage:r}=e,c=(r==null?void 0:r.properties.detector_center)??[0,0],u=c[0]??0,m=c[1]??0;return new k(a-u,i-u,l-m)}function io(e){const{projRotation:n,tomoHardware:o}=e,{motorBox:s,visibleBox:a}=Rt(o,n);return t.jsxs(t.Fragment,{children:[!s.isEmpty()&&t.jsxs(t.Fragment,{children:[t.jsx(Y,{datapos:a.min,color:T.info,text:"Visible limit"}),t.jsx(le,{startPoint:[a.min.x,a.min.y],endPoint:[a.max.x,a.max.y],lineColor:T.info,dashSize:8,gapSize:4})]}),!a.isEmpty()&&t.jsxs(t.Fragment,{children:[t.jsx(Y,{datapos:s.min,color:T.info,text:"Motor limit"}),t.jsx(le,{startPoint:[s.min.x,s.min.y],endPoint:[s.max.x,s.max.y],lineColor:T.info,dashSize:2,gapSize:2})]})]})}const ao=2;function Nt(e){return t.jsxs(A,{className:"flex-nowrap",xs:12,children:[t.jsx(L,{xs:3,children:e.title}),t.jsx(L,{className:"text-end",xs:6,children:e.value.toFixed(ao)}),t.jsx(L,{className:"text-start",xs:3,children:e.unit})]})}function Ne(e){const{motor:n}=e,[o,s]=Mt(n,e.position),a=(n==null?void 0:n.alias)??(n==null?void 0:n.name)??e.defaultName;return t.jsx(Nt,{title:a,value:o,unit:s})}function ro(e){const{tomoHardware:n,value:o}=e,{sampleStage:s}=n,a=(s==null?void 0:s.properties.detector_center)??[0,0],i=a[0]??0,l=a[1]??0,r=n.sy?K(n.sy):0;return t.jsxs(ve,{children:[e.x!==void 0&&t.jsx(Ne,{motor:n.sampu,position:e.x-r+i,defaultName:"sample-u-axis"}),e.y!==void 0&&t.jsx(Ne,{motor:n.sampv,position:e.y-r+i,defaultName:"sample-v-axis"}),e.z!==void 0&&t.jsx(Ne,{motor:n.sz,position:e.z+l,defaultName:"z-axis"}),t.jsx(Nt,{title:"intensity",value:o,unit:""})]})}function co(e,n){return e.expandByVector(e.getSize(new w).multiplyScalar(n*.5))}function lo(e){return{x:[e.min.x,e.max.x],y:[e.min.y,e.max.y]}}function uo(e){const{task:n,view:o,dragTomoScanRoi:s,readOnly:a=!1}=e,{active:i,roi:l}=n,{centerZ:r,width:c,height:u}=l,{x:m,y:d}=l.center,x=g.useCallback((v,b)=>{const p=(v.x1+v.x2)*.5,j=(v.y1+v.y2)*.5;s(n.id,o==="front"?p:m,o==="front"?d:p,j)},[o,s,m,d,r]);if(c===null||u===null||c===null||u===null)return null;const h=o==="front"?m:d,f=new w(h-c/2,r-u/2),y=new w(h+c/2,r+u/2);return t.jsx(je,{geometry:{x1:f.x,y1:f.y,x2:y.x,y2:y.y},color:T.info,lineWidth:2,readOnly:!i,onGeometryChanged:x})}function mt(e,n){return n[0]<n[1]?n[0]<=e&&e<=n[1]:n[1]<=e&&e<=n[0]}function mo(e,n){return mt(e.x,n.xVisibleDomain)&&mt(e.y,n.yVisibleDomain)}function xo(e,n){const o=e===null||n===null?null:new k(e,n),{dataToHtml:s,getVisibleDomains:a}=vn();return jn(i=>{if(o===null)return null;const l=a(i);return{isVisible:mo(o,l),displayedCoords:s(i,o)}},[e,n])}const fo=q("daiquiri.components.tomo.tiling.MotorMarker"),go=g.forwardRef((e,n)=>{const{popper:o,children:s,show:a,displayed:i,displayedCoords:l,...r}=e;return g.useEffect(()=>{o&&o.scheduleUpdate()},[s,o]),g.useEffect(()=>{o&&o.scheduleUpdate()},[l,o]),t.jsx(ce,{ref:n,body:!0,...r,children:s})});function Ie(e){const{motor:o}=e,[s,a]=Mt(o,e.position),i=(o==null?void 0:o.alias)??(o==null?void 0:o.name)??e.defaultName;return t.jsxs(A,{className:"flex-nowrap text-nowrap",xs:12,children:[t.jsx(L,{xs:3,children:i}),t.jsx(L,{className:"text-end",xs:6,children:s.toFixed(2)}),t.jsx(L,{className:"text-start",xs:3,children:t.jsx("span",{className:"text-nowrap",children:a})})]})}function ho(e){const{tomoHardware:n,projRotation:o,variant:s="primary"}=e,[a,i]=g.useState(!1),l=g.useRef(null);function r(){if(o===0){const[M,S,C]=e.coords;return[S,C]}else if(o===-90){const[M,S,C]=e.coords;return[M,C]}return console.error(`Unimplemented projRotation ${o}`),[null,null]}const[c,u]=r(),m=xo(c,u);if(c===null||u===null)return fo("Skipped: projected pixel size is null."),t.jsx(t.Fragment,{});const[d,x,h]=e.coords,f=n.sy?K(n.sy):0,{sampleStage:y}=n,v=(y==null?void 0:y.properties.detector_center)??[0,0],b=v[0]??0,p=v[1]??0,j=t.jsxs(t.Fragment,{children:[t.jsx("div",{className:"text-end mb-2",children:t.jsx(N,{size:"sm",variant:"light",onClick:()=>{e.onDelete&&e.onDelete(s)},title:"Remove the marker",children:t.jsx("i",{className:"fa fa-fw fa-trash fa-lg"})})}),t.jsxs(ve,{children:[d!==null&&t.jsx(Ie,{motor:n.sampu,position:d-f+b,defaultName:"sample-u-axis"}),x!==null&&t.jsx(Ie,{motor:n.sampv,position:x-f+b,defaultName:"sample-v-axis"}),h!==null&&t.jsx(Ie,{motor:n.sz,position:h+p,defaultName:"z-axis"}),(e.onDelete||e.onMove)&&t.jsx(A,{className:"g-0 mt-2 justify-content-center",children:t.jsxs(E,{children:[t.jsx(N,{size:"sm",variant:"danger",title:"Move the sample stage at this location",onClick:()=>{e.onMove&&e.onMove(s)},children:"Move motors"}),t.jsx(N,{size:"sm",variant:"secondary",title:"Copy bliss command to clipboard",onClick:()=>{e.onCopyToClipboard&&e.onCopyToClipboard(s)},children:t.jsx("i",{className:"fa fa-fw fa-clipboard"})})]})})]})]});return t.jsx(t.Fragment,{children:t.jsx(pn,{x:c,y:u,children:t.jsx(wt,{trigger:"click",rootClose:!0,overlay:t.jsx(go,{id:"popover-contained",show:a&&!(m!=null&&m.isVisible),displayed:a,displayedCoords:(m==null?void 0:m.displayedCoords)??null,children:j}),children:t.jsx(bt,{bg:"none",onClick:()=>i(!a),style:{pointerEvents:"auto",top:"50%",left:"50%",position:"relative",transform:"translate(-100%, -100%)"},children:t.jsx("i",{ref:l,style:{cursor:"pointer"},className:`fa fa-map-marker fa-3x text-${s}`})})})})})}function yo(e){const{getCenter:n}=e,[o,s]=H("tomo/tiling/markers",{}),a=g.useCallback((i,l,r,c)=>{const u=n()??{x:null,y:null,z:null},m=o[i]??[null,null,null],d={...o},x=l===null&&r===null&&c===null;d[i]=x?[null,null,null]:[l??m[0]??u.x,r??m[1]??u.y,c??m[2]??u.z],s(d)},[s,o]);return[o,a]}function vo(e){return t.jsx(t.Fragment,{children:Te.map(e.markers,(n,o)=>t.jsx(ho,{projRotation:e.projRotation,tomoHardware:e.tomoHardware,variant:o,coords:n,onDelete:s=>{e.setMarker(s,null,null,null)},onMove:s=>{const a=e.markers[s],i=e.computeSampleStageAtPlotLocation(a[0],a[1],a[2]);ke(i)},onCopyToClipboard:s=>{const a=e.markers[s],i=e.computeSampleStageAtPlotLocation(a[0],a[1],a[2]);function l(c,u,m){if(m===void 0||u===null)return;const d=m.to(u.properties.unit).scalar;c.push(`${u.alias??u.name}`,`${d.toFixed(4)}`)}const r=[];l(r,e.tomoHardware.sz,i.sz),l(r,e.tomoHardware.sampu,i.sampu),l(r,e.tomoHardware.sampv,i.sampv),navigator.clipboard.writeText(`umv(${r.join(", ")})`)}},o))})}function jo(e){const{disabled:n,projRotation:o,selectedMarker:s,setMarker:a}=e,i=g.useCallback(l=>{if(n){console.error("Unexpected click action");return}o===0?a(s,null,l.dataPt.x,l.dataPt.y):o===-90?a(s,l.dataPt.x,null,l.dataPt.y):console.error(`Unexpected projRotation ${o}`)},[n,o,a,s]);return t.jsx(t.Fragment,{children:!n&&t.jsx(Oe,{onClick:i})})}const It=q("daiquiri.components.tomo.tiling.TilingInteraction");function po(e){const{disabled:n,onActionRequested:o,projRotation:s,computeSampleStageAtPlotLocation:a,sampleStage:i}=e,{sy:l}=i,r=g.useCallback(c=>{if(o(),s===0){const u=c.dataPt.x,m=c.dataPt.y,d=a(null,u,m);ke(d)}else if(s===-90){const u=c.dataPt.x,m=c.dataPt.y,d=a(u,null,m);ke(d)}else console.error(`Unexpected projRotation ${s}`)},[l,a,o]);return n?(It("MoveMotorInteraction disabled."),t.jsx(t.Fragment,{})):t.jsx(Oe,{onClick:r})}function So(e){const{disabled:n,roiFov:o,projRotation:s,actions:a,onActionRequested:i}=e,l=g.useCallback((c,u,m)=>{o&&a.createScanTask({x:new G(c,"mm"),y:new G(u,"mm"),z:new G(m,"mm"),detector:o.detector,magnification:o.magnification,fov:[new G(o.fov[0],"mm"),new G(o.fov[1],"mm")],pixelSize:[new G(o.pixelSize[0],"um"),new G(o.pixelSize[1],"um")],active:!0})},[o,a]),r=g.useCallback(c=>{i(),s===0?l(c.dataPt.x,0,c.dataPt.y):s===-90?l(0,c.dataPt.x,c.dataPt.y):console.error(`Unexpected projRotation ${s}`)},[l,i,s]);return n||o===null?(It("CreateRoiInteraction disabled."),t.jsx(t.Fragment,{})):t.jsx(Oe,{onClick:r})}function wo(e){const{projRotation:n,mouseMode:o,resetMouseMode:s,actions:a,computeSampleStageAtPlotLocation:i,operator:l,sampleStage:r,roiFov:c,markerName:u,setMarker:m,mouseOverlay:d}=e;return t.jsxs(t.Fragment,{children:[t.jsx($n,{mouseMode:o,disabled:d!==void 0,plotUnit:"mm"}),t.jsx(So,{projRotation:n,disabled:d!==void 0||o!=="create",roiFov:c,actions:a,onActionRequested:()=>s()}),t.jsx(po,{projRotation:n,disabled:d!==void 0||!l||o!=="move-motors",computeSampleStageAtPlotLocation:i,sampleStage:r,onActionRequested:()=>s()}),t.jsx(jo,{projRotation:n,disabled:d!==void 0||o!=="mark-position",selectedMarker:u,setMarker:m})]})}function bo(e){const{api:n,box:o,renderTooltip:s,...a}=e;if(!n||o.isEmpty())return null;const i=o.getSize(new w),l=o.getCenter(new w);return t.jsxs("group",{position:[l.x,l.y,0],children:[t.jsx(Sn,{api:n,size:{width:i.x,height:i.y},...a}),s&&t.jsx(wn,{size:i,renderTooltip:s})]})}class zo extends Qt{constructor(){super({uniforms:{color:{value:new Jt},size:{value:new w},nbCells:{value:new w},overlap:{value:new w},scaleX:{value:0},scaleY:{value:0},lineWidth:{value:0}},vertexShader:`
-uniform float scaleX; // signed scale
-uniform float scaleY; // signed scale
-out vec2 pixelCoord;
-// out vec2 dataCoord;
-
-void main() {
-    gl_Position = projectionMatrix * modelViewMatrix * vec4(position, 1.0);
-    vec2 pixelScale = abs(vec2(scaleX, scaleY));
-    // dataCoord = vec2(position.x, position.y);
-    pixelCoord = vec2(position.x, position.y) / pixelScale;
-}
-      `,fragmentShader:`
-uniform vec4 color;
-uniform vec4 gapColor;
-uniform float gapSize;
-uniform float dashSize;
-uniform float lineWidth;
-uniform float scaleX;  // signed scale
-uniform float scaleY;  // signed scale
-uniform vec2 size;
-uniform vec2 nbCells;
-uniform vec2 overlap;
-in vec2 pixelCoord;
-
-/**
- * @param position: pixel position
- * @param size: size of the rectangle
- * @param nbCells: number of cells
- * @param overlap: size of the overlap in ratio of a cell
- *                 (0.5 means same size with the cell)
- */
-float sdf_grid(in vec2 position, in vec2 size, in vec2 nbCells, in vec2 overlap) {
-    vec2 maxSize = size / (nbCells - overlap * (nbCells - 1.0));
-    vec2 tableDist = min(abs(abs(position) - size * 0.5), maxSize);
-    vec2 overlapSize = maxSize * overlap;
-    vec2 cellSize = maxSize - overlapSize;
-    vec2 p = position - cellSize * 0.5 * (1.0 - mod(nbCells, 2.0));
-    vec2 gridDist = abs(abs(mod(p, cellSize)) - cellSize * 0.5);
-    gridDist -= overlapSize * 0.5;
-    gridDist = max(gridDist, cellSize  - tableDist);
-    return min(gridDist.x, gridDist.y);
-}
-
-void main() {
-    vec2 scale = abs(vec2(scaleX, scaleY));
-    float d = sdf_grid(pixelCoord, size / scale, nbCells, overlap);
-
-    //#define DEBUG_DIST
-    #ifdef DEBUG_DIST
-        vec2 n = size / nbCells / scale;
-        float c = d / min(n.x, n.y);
-        gl_FragColor = vec4(max(-c, 0.0), abs(c), max(c, 0.0), 1.0);
-        return;
-    #endif
-
-    if (d > lineWidth) {
-      discard;
-    }
-    float alpha;
-    if (lineWidth >= 1.0) {
-        alpha = smoothstep(1.0, 0.0, d - lineWidth * 0.5);
-    } else {
-        // simulate line thiner than 1px with alpha
-        alpha = lineWidth;
-    }
-    gl_FragColor = vec4(color.rgb, color.a * alpha);
-}
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M=j[1]*.5,S=n.zstart+b+p*M,C=n.zstop+b-p*M,D=C-S;return{x:V(n.x+v,3),y:V(n.y+v,3),z_start:V(S,3),z_stop:V(C,3),z_height:V(Math.abs(D)+j[1],3),z_direction:p>0?"Down":"Up"}},[n,a]);return t.jsxs(Ee,{direction:"horizontal",children:[t.jsx("div",{className:"text-dark p-2",children:"Zseries:"}),t.jsxs(E,{className:e.className,children:[t.jsx(N,{variant:r?"primary":"secondary",title:"Initialize the location of the ROI",onClick:()=>{l("create-tiling-roi")},children:t.jsx("i",{className:"fa fam-roi-new fa-fw"})}),t.jsx(N,{variant:"secondary",title:"Initialize the location of the ROI",onClick:()=>{o()},disabled:n===null,children:t.jsx("i",{className:"fa fa-trash-can fa-fw"})}),t.jsx(_e,{button:t.jsxs("span",{className:"text-nowrap",children:[t.jsx("i",{className:"fa fa-plus",title:"Launch a new tiling scan"})," New Scan"]}),disabled:n===null,options:{tags:["tomo-zseries-roi"],providers:{metadata:{datacollections:{namespace:"tilingview"}}}},additionalFormData:c})]})]})}function ss(e){const{editScanRoi:n,setEditScanRoi:o}=e,s=g.useRef(null),a=g.useRef(null),i=g.useRef(null);function l(r){o(c=>c===r?null:r)}return t.jsxs(t.Fragment,{children:[t.jsxs(E,{className:e.className,children:[t.jsx(N,{ref:s,variant:n==="tiling"?"primary":"secondary",title:"ROI for tiling scan",onClick:()=>{l("tiling")},children:t.jsx("i",{className:"fa fam-roi-rect-tile fa-fw fa-lg"})}),t.jsx(N,{ref:a,variant:n==="scan"?"primary":"secondary",title:"ROI for tomo scan",onClick:()=>{l("scan")},children:t.jsx("i",{className:"fa fam-roi-rect fa-fw fa-lg"})}),t.jsx(N,{ref:i,variant:n==="zseries"?"primary":"secondary",title:"ROI for zseries scan",onClick:()=>{l("zseries")},children:t.jsx("i",{className:"fa fam-roi-rect-tile-v fa-fw fa-lg"})})]}),t.jsx(Re,{show:n==="tiling",placement:"bottom",container:s.current,target:s.current,containerPadding:20,children:t.jsx(ce,{id:"popover-tiling-contained",children:t.jsx(ts,{...e,className:void 0})})}),t.jsx(Re,{show:n==="scan",placement:"bottom",container:a.current,target:a.current,containerPadding:20,children:t.jsx(ce,{id:"popover-scan-contained",children:t.jsx(ns,{...e,className:void 0})})}),t.jsx(Re,{show:n==="zseries",placement:"bottom",container:i.current,target:i.current,containerPadding:20,children:t.jsx(ce,{id:"popover-zseries-contained",children:t.jsx(os,{...e,className:void 0})})})]})}function is(e,n){if(n===void 0)return[];const o=[];return Object.keys(n).map(a=>[a,n[a].tomo_detector_id]).forEach(a=>{const[i,l]=a,r=re(e,l),c=re(e,`${l}.detector`);if(r===null||c===null){console.debug(`${l} not there`);return}if(!on(c)||!sn(c)||!r.properties.state||!r.properties.sample_pixel_size_mode)return;function u(){return!r||!r.online||r.properties.state==="OFFLINE"?"DETECTOR_OFFLINE":"READY"}const m=u();if(r.properties.sample_pixel_size_mode==="USER")r.properties.user_sample_pixel_size!==null&&o.push({detector:i,state:m,size:c.properties.size,userPixelSize:r.properties.user_sample_pixel_size});else{const x=re(e,`${l}.optic`);if(x===null){console.debug(`${r.properties.optic} not there`);return}if(!x.properties.available_magnifications){console.debug(`${r.properties.optic} no magnifications`);return}x.properties.available_magnifications.forEach(h=>{o.push({detector:i,state:m,size:r.properties.actual_size,autoPixelSize:{magnification:h,cameraPixelSize:r.properties.camera_pixel_size}})})}}),o}function as(){const e=nn(),n=de(o=>o.hardware);return g.useMemo(()=>is(n,e),[n,e])}function Tt(e,n){return[n[0]*e.size[0]*.001,n[1]*e.size[1]*.001]}function Ft(e){if(e.userPixelSize!==void 0)return[e.userPixelSize,e.userPixelSize];if(e.autoPixelSize!==void 0){const n=e.autoPixelSize.magnification,o=e.autoPixelSize.cameraPixelSize;return[o[0]/n,o[1]/n]}throw new Error("Unsupported TomoAvailableFieldOfView state")}function rs(e){const{eventKey:n,isSelected:o,data:s}=e,a=Ft(s),i=Tt(s,a);function l(){if(s.userPixelSize!==void 0)return"user";if(s.autoPixelSize!==void 0)return`×${s.autoPixelSize.magnification}`;throw new Error("Unsupported TomoAvailableFieldOfView state")}return t.jsxs(F.Item,{eventKey:n,children:[t.jsxs("div",{children:[s.detector," ",l()]}),t.jsxs("div",{className:"fw-bold",children:[i[0],"mm ",a[0],"µm"]})]})}function cs(e){const{as:n=void 0,onSelect:o,value:s,variant:a}=e,i=as();function l(u){if(u===null)return"No detector/optic selected";function m(){return u===null?"":u.magnification===null?"user":`×${u.magnification}`}return`${u.detector} ${m()} ${u.pixelSize[0]}µm ${u.fov[0]}mm`}const r=l(s);function c(u){var y;if(u===null){o(null);return}const m=Number.parseInt(u),d=i[m];d.size;const x=Ft(d),h=Tt(d,x),f={detector:d.detector,magnification:((y=d.autoPixelSize)==null?void 0:y.magnification)??null,fov:h,pixelSize:x};o(f)}return t.jsx(Yn,{as:n,title:r,id:"bg-vertical-dropdown-3",onSelect:c,variant:a,children:i.map((u,m)=>{var x;const d=s!==null&&u.detector===s.detector&&(((x=u.autoPixelSize)==null?void 0:x.magnification)??null)===s.magnification;return t.jsx(rs,{eventKey:m,isSelected:d,data:u},m)})})}function ls(e){return t.jsx(cs,{...e})}function Pe(e){return e<9?`0${e}`:e}function ds(e){const o=Date.now()-e.valueOf();if(o<50*1e3)return"Few seconds ago";if(o<80*1e3)return"1 minute ago";if(o<90*60*1e3)return`${Math.round(o/6e4)} minutes ago`;if(o<7*24*60*60*1e3){const s=new Date;if(e.getDate()===s.getDate())return`Today at ${e.getHours()}:${Pe(e.getMinutes())}`;const a=new Date(s);if(a.setDate(a.getDate()-1),e.getDate()===a.getDate())return`Yesterday at ${e.getHours()}:${Pe(e.getMinutes())}`;const i=new Date(s);if(i.setDate(i.getDate()-s.getDay()),i.setHours(0),i.setMinutes(0),i.setSeconds(0),i.setMilliseconds(0),e>=i)return`${e.toLocaleString("default",{weekday:"long"})} at ${e.getHours()}:${Pe(e.getMinutes())}`}return e.toLocaleDateString()}function us(e){const{imageTiling:n,isSelected:o}=e,s=o?"fa fa-fw fa-dot-circle-o":"fa fa-fw fa-circle-o",a=n.status==="done"?"success":"warning",i=new Date(Date.parse(n.create_time));return t.jsxs(F.Item,{className:"d-flex",style:{alignItems:"center"},eventKey:n.id,active:o,children:[t.jsx("i",{className:s})," ",t.jsx("span",{className:"ms-2 me-auto pr-2",title:i.toLocaleString(),children:ds(i)})," ",t.jsx(bt,{className:"me-2",bg:a,children:n.status.toUpperCase()})," ",t.jsx(N,{size:"sm",variant:"danger",onClick:l=>{l.stopPropagation(),e.onDelete(n.id)},children:t.jsx("i",{className:"fa fa-fw fa-trash"})})]})}function ms(e){const{as:n=void 0,onSelect:o,selected:s,variant:a,tomovisService:i}=e,l=i.imageTilings;return t.jsxs(F,{className:`me-1 ${e.dropDirection==="up"?"dropup":""}`,as:n,onSelect:r=>{o(r)},onToggle:r=>{r&&i.updateImageTilings()},children:[t.jsxs(F.Toggle,{id:"dropdown-basic",variant:a,title:s?`Tiling 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jt("Skipped: one of imagePosition, szPosition, detectorSize, imagePixelSize, imageSomegaPosition is missing."),t.jsx(t.Fragment,{});const x=(m==null?void 0:m.to("mm").scalar)??0,h=(d==null?void 0:d.to("mm").scalar)??0,f=c.to("mm").scalar,y=i?i.to("mm").scalar:0,v=u.scalar*(s?1:-1),b=r.to("mm").scalar,p=.01;function j(R,_){const $=(R-_)%360;return $<0?360+$:$}const M=j(v,o),S=M<p||M>360-p,C=M>180-p&&M<180+p;if(!S&&!C)return jt(`Skipped: rot ${v} does not match to the projRotation ${o}.`),t.jsx(t.Fragment,{});const D=S?-1:1;return t.jsx(Pn,{values:a,domain:n.scaleDomain,colorMap:n.colorMap,invertColorMap:n.invertColorMap,scaleType:n.scaleType,position:[-D*(y-x),f-h,2],scale:[D*b,b,1],size:l})}function xs(e){const{resetZoomEnabled:n,actions:o}=e;return t.jsxs(F,{as:E,children:[t.jsx(N,{title:"Reset zoom (sample stage overview)",variant:"secondary",disabled:!n,onClick:()=>{o.resetZoom()},children:t.jsx("i",{className:"fa fa-expand fa-fw 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t.jsx(N,{variant:gs(e.var,e.value),onClick:()=>{e.setter(e.value)},className:"text-nowrap",size:"sm",children:e.children})}function hs(e){const{as:n=void 0,variant:o="secondary",config:s}=e;return t.jsxs(F,{as:n,className:`${e.dropDirection==="up"?"dropup":""}`,children:[t.jsx(F.Toggle,{id:"dropdown-basic",variant:o,className:"d-flex align-items-center",children:t.jsx("i",{className:"fa fa-sliders fa-fw fa-lg"})}),t.jsx(F.Menu,{className:"dropdown-menu-center",children:t.jsx("div",{className:"ms-1 me-1",style:{minWidth:"300px"},children:t.jsxs(ve,{children:[t.jsxs(A,{children:[t.jsx(L,{className:"my-auto",children:"Display 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ys=an()(rn(e=>({setFrontViewpoint:n=>{const{center:o,scale:s}=n;e({y:o.x,z:o.y,scale:s.x})},setSideViewpoint:n=>{const{center:o,scale:s}=n;e({x:o.x,z:o.y,scale:s.x})}}),{name:"tomotiling-viewpoint",storage:cn(()=>sessionStorage)}));function vs(){const{x:e,y:n,z:o,scale:s,setFrontViewpoint:a,setSideViewpoint:i}=ys();let l;Number.isFinite(n)&&Number.isFinite(o)&&Number.isFinite(s)&&(l={center:new k(n,o,0),scale:new k(s,s,1)});let r;return Number.isFinite(e)&&Number.isFinite(o)&&Number.isFinite(s)&&(r={center:new k(e,o,0),scale:new k(s,s,1)}),{frontViewpoint:l,setFrontViewpoint:a,sideViewpoint:r,setSideViewpoint:i}}function js(e){const{toolbarLocation:n}=e;return t.jsxs("div",{className:e.className,style:e.style,children:[n==="top"&&e.toolbar,e.children,n==="bottom"&&e.toolbar]})}q("daiquiri.components.tomo.TomoTilingtiling");function ps(){const e=g.useRef(null),n=g.useRef(null);function o(i,l){if(e.current){const{getCameraViewpoint:r,updateCameraViewpoint:c}=e.current,u=r();c({center:new k(u.center.x,i.y),scale:l})}}function s(i,l){if(n.current){const{getCameraViewpoint:r,updateCameraViewpoint:c}=n.current,u=r();c({center:new k(u.center.x,i.y),scale:l})}}const a=g.useMemo(()=>({resetZoom:()=>{var i,l;(i=e.current)==null||i.resetZoom(),(l=n.current)==null||l.resetZoom()},setScale:i=>{var l,r;(l=e.current)==null||l.setScale(1/i),(r=n.current)==null||r.setScale(1/i)}}),[e,n]);return{handleFrameFront:s,handleFrameSide:o,frontRef:e,sideRef:n,actions:a}}function Ss(e){const{actions:n,tasks:o,options:s}=e,{showrois:a=!0,showlaunchscan:i=!0,tomoconfig:l}=s,r=ln(),[c,u]=g.useState(null),m=zt(),d=fs(),x=dn(l??""),[h,f]=H("tomo/tilingroi/roi",null),[y,v]=H("tomo/scanroi/roi",null),[b,p]=H("tomo/zseriesroi/roi",null),[j,M]=H("tomo/tilingview/refreshperiod",30),{frontViewpoint:S,setFrontViewpoint:C,sideViewpoint:D,setSideViewpoint:I}=vs(),R=un(),{tomovis_url:_,tomovis_proxy_url:$}=R,B=Kn(_,$),z=Un(),P=eo(B,r,3e4),{apiFront:Q,apiSide:ne,histogram:ue,tilingBoxFront:Et,tilingBoxSide:Lt,invalidate:At,lazyRefresh:$e}=Jn(B,c),we=Rn(ue);Ct({statistics:we,...d}),g.useEffect(()=>{let W=null;return P.state==="READY"?$e():P.state==="PROCESSING"&&j&&(W=setInterval(()=>{$e()},j*1e3)),()=>{W&&clearInterval(W)}},[P.state,j]);const J=Cn("zoom"),{mouseMode:be,resetMouseMode:Ot}=J,Be=Fe(x),_t=g.useCallback(()=>Se(Be),[Be]),Ge=mn(`${l}.flat_motion`),[He,Ye]=yo({getCenter:_t}),Vt=Zn({sampleStageRefs:x}),ze=qn({detector:Vt,sampleStageRefs:x,profile:z.profile,normalization:z.scaleType,autoscale:z.autoscale,autoscaleMode:z.autoscaleMode,domain:z.scaleDomain,enabled:d.isDetectorDisplayed,minRefreshPeriod:.5}).data;g.useEffect(()=>{P.lastReadyImageTiling&&u(P.lastReadyImageTiling)},[P.lastReadyImageTiling]),g.useEffect(()=>{!m&&be==="move-motors"&&Ot()},[be,m]);const[me,$t]=H("tomo/tilingroi/fov",null),[Ce,Bt]=H("tomo/tilingmarker/selection","primary"),[Me,Gt]=g.useState(null),oe=ps(),Ue=g.useCallback((W,xe,We)=>{const Ht=de.getState().hardware,se=pe(Ht,l),{sampleStage:De}=se,Xe=(De==null?void 0:De.properties.detector_center)??[0,0],Qe=Xe[0]??0,Yt=Xe[1]??0,Je=se.sy?K(se.sy):0;function Ut(){return se.sampu===null||se.sampv===null?[void 0,void 0]:[W===null?void 0:new G(W-Je+Qe,"mm"),xe===null?void 0:new 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gn(e=>e.scanTasks)}function bs(e){const n=fn(),o=ws();return t.jsx(Ss,{...e,actions:n,tasks:o})}function oi(e){const{yamlNode:n,showrois:o,showlaunchscan:s,tomoconfig:a,...i}=e;hn(n,"tomoconfig",a),tt(n,"showrois",o),tt(n,"showlaunchscan",s),yn(n,i);const l={showrois:o,showlaunchscan:s,tomoconfig:a};return t.jsx(bs,{options:l})}export{oi as default};