dagmc-h5m-file-inspector 0.4.3__py3-none-any.whl → 0.6.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- dagmc_h5m_file_inspector/__init__.py +4 -0
- dagmc_h5m_file_inspector/_version.py +33 -4
- dagmc_h5m_file_inspector/cli.py +106 -0
- dagmc_h5m_file_inspector/core.py +851 -67
- dagmc_h5m_file_inspector-0.6.0.dist-info/METADATA +154 -0
- dagmc_h5m_file_inspector-0.6.0.dist-info/RECORD +10 -0
- {dagmc_h5m_file_inspector-0.4.3.dist-info → dagmc_h5m_file_inspector-0.6.0.dist-info}/WHEEL +1 -1
- dagmc_h5m_file_inspector-0.6.0.dist-info/entry_points.txt +2 -0
- dagmc_h5m_file_inspector-0.4.3.data/scripts/inspect-dagmc-h5m-file +0 -89
- dagmc_h5m_file_inspector-0.4.3.dist-info/METADATA +0 -138
- dagmc_h5m_file_inspector-0.4.3.dist-info/RECORD +0 -9
- {dagmc_h5m_file_inspector-0.4.3.dist-info → dagmc_h5m_file_inspector-0.6.0.dist-info/licenses}/LICENSE.txt +0 -0
- {dagmc_h5m_file_inspector-0.4.3.dist-info → dagmc_h5m_file_inspector-0.6.0.dist-info}/top_level.txt +0 -0
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Metadata-Version: 2.4
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Name: dagmc_h5m_file_inspector
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Version: 0.6.0
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Summary: Extracts information from DAGMC h5m files including volumes number, material tags
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Author-email: The dagmc_h5m_file_inspector Development Team <mail@jshimwell.com>
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License-Expression: MIT
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Project-URL: Homepage, https://github.com/fusion-energy/dagmc_h5m_file_inspector
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Project-URL: Source, https://github.com/fusion-energy/dagmc_h5m_file_inspector
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Project-URL: Tracker, https://github.com/fusion-energy/dagmc_h5m_file_inspector/issues
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Classifier: Programming Language :: Python :: 3
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Classifier: Operating System :: OS Independent
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Requires-Python: >=3.8
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Description-Content-Type: text/markdown
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License-File: LICENSE.txt
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Requires-Dist: h5py
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Requires-Dist: numpy
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Provides-Extra: pymoab
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Requires-Dist: pymoab; extra == "pymoab"
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Provides-Extra: tests
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Requires-Dist: pytest>=5.4.3; extra == "tests"
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Requires-Dist: requests; extra == "tests"
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Requires-Dist: pytest-cov; extra == "tests"
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Requires-Dist: cad-to-dagmc; extra == "tests"
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Requires-Dist: cadquery; extra == "tests"
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Dynamic: license-file
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[](https://www.python.org)
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[](https://github.com/fusion-energy/dagmc_h5m_file_inspector/actions/workflows/ci_with_install.yml)
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[](https://codecov.io/gh/fusion-energy/dagmc_h5m_file_inspector)
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[](https://github.com/fusion-energy/dagmc_h5m_file_inspector/actions/workflows/python-publish.yml)
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[](https://pypi.org/project/dagmc_h5m_file_inspector/)
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# dagmc-h5m-file-inspector
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A minimal Python package that inspects DAGMC h5m files to extract volume IDs,
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material tags, bounding boxes, and geometric volumes.
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# Installation
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```bash
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pip install dagmc-h5m-file-inspector
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```
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The package uses h5py as the default backend. Optionally, pymoab can be used
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as an alternative backend if installed.
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# Python API Usage
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## Finding volume IDs
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```python
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import dagmc_h5m_file_inspector as di
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di.get_volumes_from_h5m("dagmc.h5m")
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>>> [1, 2]
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```
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## Finding material tags
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```python
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import dagmc_h5m_file_inspector as di
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di.get_materials_from_h5m("dagmc.h5m")
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>>> ['big_box', 'small_box']
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```
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## Finding volume IDs with their materials
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```python
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import dagmc_h5m_file_inspector as di
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di.get_volumes_and_materials_from_h5m("dagmc.h5m")
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>>> {1: 'small_box', 2: 'big_box'}
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```
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## Getting the bounding box
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```python
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import dagmc_h5m_file_inspector as di
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lower_left, upper_right = di.get_bounding_box_from_h5m("dagmc.h5m")
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>>> lower_left
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array([-5., -10., -10.])
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>>> upper_right
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array([25., 10., 10.])
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```
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## Getting geometric volume sizes by cell ID
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```python
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import dagmc_h5m_file_inspector as di
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di.get_volumes_sizes_from_h5m_by_cell_id("dagmc.h5m")
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>>> {1: 1000.0, 2: 8000.0}
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```
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## Getting geometric volume sizes by material name
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```python
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import dagmc_h5m_file_inspector as di
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di.get_volumes_sizes_from_h5m_by_material_name("dagmc.h5m")
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>>> {'small_box': 1000.0, 'big_box': 8000.0}
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```
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## Setting OpenMC material volumes from DAGMC geometry
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This function reads the DAGMC file, matches materials by name, and sets the
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`volume` attribute on the corresponding OpenMC Material objects.
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```python
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import openmc
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import dagmc_h5m_file_inspector as di
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# Create OpenMC materials with names matching the DAGMC file
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small_box = openmc.Material(name='small_box')
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big_box = openmc.Material(name='big_box')
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materials = openmc.Materials([small_box, big_box])
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# Set volumes from DAGMC geometry
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di.set_openmc_material_volumes_from_h5m(materials, "dagmc.h5m")
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>>> small_box.volume
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1000.0
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>>> big_box.volume
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8000.0
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```
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## Using the pymoab backend
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All functions support an optional `backend` parameter. The default is `"h5py"`,
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but `"pymoab"` can be used if pymoab is installed:
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```python
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import dagmc_h5m_file_inspector as di
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di.get_volumes_from_h5m("dagmc.h5m", backend="pymoab")
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>>> [1, 2]
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```
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dagmc_h5m_file_inspector/__init__.py,sha256=XjtzcKpewbDKzZLaGmnsaAmi49YOr1OwdLWxsgDYkWI,350
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dagmc_h5m_file_inspector/_version.py,sha256=MAYWefOLb6kbIRub18WSzK6ggSjz1LNLy9aDRlX9Ea4,704
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dagmc_h5m_file_inspector/cli.py,sha256=4vzu4ogkGNwwjy-TguFCDbyscZUrZ80LY2DOqn_Ytr8,2803
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dagmc_h5m_file_inspector/core.py,sha256=Uf6a9xl-2on8gIPuRXrm1ZbO3jXXdFTmKaxwSBHLAcs,30732
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dagmc_h5m_file_inspector-0.6.0.dist-info/licenses/LICENSE.txt,sha256=UXVi860HD1Sxktd5fnU_1rn9Y77JxHF_jM1muoihSJc,1070
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dagmc_h5m_file_inspector-0.6.0.dist-info/METADATA,sha256=ZCgD_zAHwcbwjub64VMcwbh_Dd7fDR2nwHMHHUsMPP0,4355
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dagmc_h5m_file_inspector-0.6.0.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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dagmc_h5m_file_inspector-0.6.0.dist-info/entry_points.txt,sha256=Ae_DrADNifqSNi5IWc19B7HM8qSO6pjTfjWRD0HR8fM,77
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dagmc_h5m_file_inspector-0.6.0.dist-info/top_level.txt,sha256=Cc4PPWyoZDecf8ylWv_giWxZmFZx1I7m68uq7-ZZUUM,25
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dagmc_h5m_file_inspector-0.6.0.dist-info/RECORD,,
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#!/usr/bin/python
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import json
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import pprint
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from pathlib import Path
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from dagmc_h5m_file_inspector import get_volumes_from_h5m, get_materials_from_h5m, get_volumes_and_materials_from_h5m
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if __name__ == '__main__':
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parser = argparse.ArgumentParser()
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parser.add_argument(
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'-i', '--input',
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type=str,
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help='The filename of the h5m file',
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required=True
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)
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parser.add_argument(
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'-v', '--volumes',
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help='Returns volume ids from a h5m file',
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required=False,
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action='store_true'
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)
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parser.add_argument(
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help='Returns materials tags from a h5m file',
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required=False,
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action='store_true'
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)
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parser.add_argument(
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help='Returns volume ids with materials tags from a h5m file',
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required=False,
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action='store_true'
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)
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parser.add_argument(
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type=str,
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default='inspector_results.txt',
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help='Returns volume ids with materials tags from a h5m file',
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required=False,
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)
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volumes = get_volumes_from_h5m(filename = args.input)
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print(f'\nVolume IDs ={volumes}')
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materials = None
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print(f'\nMaterial tags ={materials}')
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both = get_volumes_and_materials_from_h5m(filename = args.input)
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print('\nVolume IDs and material tags=')
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print(f'\nNo inspection of {args.input} carried out as outputs were not '
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'specified. Output options include -v, --volume, -m, --materials'
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Metadata-Version: 2.1
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Name: dagmc-h5m-file-inspector
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Version: 0.4.3
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Summary: Extracts information from DAGMC h5m files including volumes number, material tags
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Home-page: https://github.com/fusion-energy/dagmc_h5m_file_inspector
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Author: The dagmc_h5m_file_inspector Development Team
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Author-email: mail@jshimwell.com
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License: MIT
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Project-URL: Source, https://github.com/fusion-energy/dagmc_h5m_file_inspector
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Project-URL: Tracker, https://github.com/fusion-energy/dagmc_h5m_file_inspector/issues
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Platform: UNKNOWN
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Classifier: Natural Language :: English
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Classifier: Topic :: Scientific/Engineering
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.6
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Classifier: Programming Language :: Python :: 3.8
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Classifier: Programming Language :: Python :: 3.9
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Classifier: License :: OSI Approved :: MIT License
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Classifier: Operating System :: OS Independent
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Requires-Python: >=3.6
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Description-Content-Type: text/markdown
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License-File: LICENSE.txt
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[](https://github.com/fusion-energy/dagmc_h5m_file_inspector/actions/workflows/python-publish.yml)
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[](https://pypi.org/project/dagmc_h5m_file_inspector/)
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# dagmc-h5m-file-inspector
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A minimal Python package that finds the volume ids and the material tags in a
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DAGMC h5m file.
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# Installation (Conda)
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The dagmc-h5m-file-inspector package can be installed with a single conda
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install terminal command.
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```bash
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conda install -c fusion-energy -c conda-forge dagmc_h5m_file_inspector
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```
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# Installation (Conda + Pip)
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The dagmc-h5m-file-inspector package requires pymoab which can be installed
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alongside Moab with a conda install command. Moab is not avialable on pip,
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however it can be installed with Conda.
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```bash
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conda install -c conda-forge moab
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pip install dagmc-h5m-file-inspector
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```
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# Python API Usage
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Finding the volume IDs in a DAGMC h5m file.
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```python
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import dagmc_h5m_file_inspector as di
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di.get_volumes_from_h5m("dagmc.h5m")
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>>> [1, 2]
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```
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Finding the material tags in a DAGMC h5m file.
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```python
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import dagmc_h5m_file_inspector as di
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di.get_materials_from_h5m("dagmc.h5m")
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>>> ['steel', 'graveyard']
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```
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Finding the volume IDs with their materials present in a DAGMC h5m file.
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```python
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import dagmc_h5m_file_inspector as di
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di.get_volumes_and_materials_from_h5m("dagmc.h5m")
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>>> {1: 'steel', 2: 'graveyard'}
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```
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# Command line tool usage
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The options for the command line tool can be obtained with ```inspect-dagmc-h5m-file --help```
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Print the volume IDs present in a dagmc h5m file to the terminal
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```
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inspect-dagmc-h5m-file -i dagmc.h5m -v
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>>> Volume IDs =[1, 2]
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```
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Print the material tags present in a dagmc h5m file to the terminal
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```bash
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inspect-dagmc-h5m-file -i dagmc.h5m -m
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>>> Material tags =['steel', 'graveyard']
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```
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Print the volume IDs and materials present in a dagmc h5m file to the terminal
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```bash
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inspect-dagmc-h5m-file -i dagmc.h5m -b
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>>> Volume IDs and material tags=
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{ 1: 'steel',
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2: 'graveyard'}
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```
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Write the volume IDs and materials present in a dagmc h5m file to a txt file
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```bash
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inspect-dagmc-h5m-file -i dagmc.h5m -b -o output.txt
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>>> writing file output.txt
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```
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# Aknowledgements
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This package is based on a [Python script](https://gist.github.com/gonuke/c36e327e399c7a685cd315c738121c9a) by @gonuke
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@@ -1,9 +0,0 @@
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1
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dagmc_h5m_file_inspector/__init__.py,sha256=dOGqFI0aZYEll86_fIbBLTLQ7Ds-OiLfdDlyc5ujZwI,133
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dagmc_h5m_file_inspector/_version.py,sha256=qx7r5dCvqUZNACmroQpBhx84w6eihr1TEOgKC1H7IbY,142
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dagmc_h5m_file_inspector/core.py,sha256=qOqsbDkp4LcminKQMItzW6gnChFSVlq971zU5WIjJIc,4032
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dagmc_h5m_file_inspector-0.4.3.data/scripts/inspect-dagmc-h5m-file,sha256=uzUfqnru8-8oxZMYEs5UvUAoRIu46GaREkiA6HKhXN4,2462
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dagmc_h5m_file_inspector-0.4.3.dist-info/LICENSE.txt,sha256=UXVi860HD1Sxktd5fnU_1rn9Y77JxHF_jM1muoihSJc,1070
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dagmc_h5m_file_inspector-0.4.3.dist-info/METADATA,sha256=B-4IIeoCNvhtgzK2y2ay9Pfnyt91Rv5JBPzaQQ-4uFQ,4266
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dagmc_h5m_file_inspector-0.4.3.dist-info/WHEEL,sha256=G16H4A3IeoQmnOrYV4ueZGKSjhipXx8zc8nu9FGlvMA,92
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dagmc_h5m_file_inspector-0.4.3.dist-info/top_level.txt,sha256=Cc4PPWyoZDecf8ylWv_giWxZmFZx1I7m68uq7-ZZUUM,25
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dagmc_h5m_file_inspector-0.4.3.dist-info/RECORD,,
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File without changes
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{dagmc_h5m_file_inspector-0.4.3.dist-info → dagmc_h5m_file_inspector-0.6.0.dist-info}/top_level.txt
RENAMED
|
File without changes
|