cyclevi 0.1.0__py3-none-any.whl

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Files changed (9) hide show
  1. cyclevi/__init__.py +27 -0
  2. cyclevi/data/__init__.py +0 -0
  3. cyclevi/data/homo_sapiens_cc_genes.csv +98 -0
  4. cyclevi/model.py +1438 -0
  5. cyclevi-0.1.0.dist-info/METADATA +103 -0
  6. cyclevi-0.1.0.dist-info/RECORD +9 -0
  7. cyclevi-0.1.0.dist-info/WHEEL +5 -0
  8. cyclevi-0.1.0.dist-info/licenses/LICENSE +28 -0
  9. cyclevi-0.1.0.dist-info/top_level.txt +1 -0
cyclevi/__init__.py ADDED
@@ -0,0 +1,27 @@
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+ from cyclevi.model import (
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+ CycleVI,
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+ CycleVI_VAE,
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+ CYCLE_REGISTRY_KEYS,
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+ DecoderCycleVI,
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+ PhaseAdversarialTrainingPlan,
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+ Classifier,
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+ create_cell_cycle_gene_mask,
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+ )
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+ from importlib.resources import files as _files
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+
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+
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+ def get_cc_genes_path() -> str:
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+ """Return the path to the bundled human cell cycle genes CSV file."""
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+ return str(_files("cyclevi.data").joinpath("homo_sapiens_cc_genes.csv"))
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+
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+
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+ __all__ = [
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+ "CycleVI",
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+ "CycleVI_VAE",
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+ "CYCLE_REGISTRY_KEYS",
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+ "DecoderCycleVI",
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+ "PhaseAdversarialTrainingPlan",
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+ "Classifier",
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+ "create_cell_cycle_gene_mask",
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+ "get_cc_genes_path",
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+ ]
cyclevi/data/__init__.py ADDED
File without changes
cyclevi/data/homo_sapiens_cc_genes.csv ADDED
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+ phase,geneID,modified
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+ G2/M,ENSG00000010292,9/13/17
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+ G2/M,ENSG00000011426,9/13/17
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+ G2/M,ENSG00000013810,9/13/17
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+ G2/M,ENSG00000072571,9/13/17
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+ G2/M,ENSG00000075218,9/13/17
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+ G2/M,ENSG00000080986,9/13/17
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+ G2/M,ENSG00000087586,9/13/17
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+ G2/M,ENSG00000088325,9/13/17
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+ G2/M,ENSG00000089685,9/13/17
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+ G2/M,ENSG00000092140,9/13/17
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+ G2/M,ENSG00000094916,9/13/17
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+ G2/M,ENSG00000100401,9/13/17
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+ G2/M,ENSG00000102974,9/13/17
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+ G2/M,ENSG00000111665,9/13/17
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+ G2/M,ENSG00000112742,9/13/17
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+ G2/M,ENSG00000113810,9/13/17
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+ G2/M,ENSG00000114346,9/13/17
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+ G2/M,ENSG00000115163,9/13/17
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+ G2/M,ENSG00000117399,9/13/17
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+ G2/M,ENSG00000117650,9/13/17
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+ G2/M,ENSG00000117724,9/13/17
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+ G2/M,ENSG00000120802,9/13/17
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+ G2/M,ENSG00000123485,9/13/17
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+ G2/M,ENSG00000123975,9/13/17
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+ G2/M,ENSG00000126787,9/13/17
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+ G2/M,ENSG00000129195,9/13/17
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+ G2/M,ENSG00000131747,9/13/17
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+ G2/M,ENSG00000134222,9/13/17
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+ G2/M,ENSG00000134690,9/13/17
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+ G2/M,ENSG00000136108,9/13/17
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+ G2/M,ENSG00000137804,9/13/17
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+ G2/M,ENSG00000137807,9/13/17
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+ G2/M,ENSG00000138160,9/13/17
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+ G2/M,ENSG00000138182,9/13/17
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+ G2/M,ENSG00000138778,9/13/17
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+ G2/M,ENSG00000139354,9/13/17
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+ G2/M,ENSG00000142945,9/13/17
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+ G2/M,ENSG00000143228,9/13/17
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+ G2/M,ENSG00000143401,9/13/17
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+ G2/M,ENSG00000143815,9/13/17
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+ G2/M,ENSG00000148773,9/13/17
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+ G2/M,ENSG00000157456,9/13/17
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+ G2/M,ENSG00000158402,9/13/17
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+ G2/M,ENSG00000164104,9/13/17
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+ G2/M,ENSG00000169607,9/13/17
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+ G2/M,ENSG00000169679,9/13/17
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+ G2/M,ENSG00000170312,9/13/17
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+ G2/M,ENSG00000173207,9/13/17
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+ G2/M,ENSG00000175063,9/13/17
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+ G2/M,ENSG00000175216,9/13/17
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+ G2/M,ENSG00000178999,9/13/17
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+ G2/M,ENSG00000184661,9/13/17
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+ G2/M,ENSG00000188229,9/13/17
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+ G2/M,ENSG00000189159,9/13/17
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+ S,ENSG00000012963,9/13/17
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+ S,ENSG00000049541,9/13/17
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+ S,ENSG00000051180,9/13/17
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+ S,ENSG00000073111,9/13/17
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+ S,ENSG00000075131,9/13/17
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+ S,ENSG00000076003,9/13/17
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+ S,ENSG00000076248,9/13/17
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+ S,ENSG00000077514,9/13/17
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+ S,ENSG00000092470,9/13/17
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+ S,ENSG00000092853,9/13/17
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+ S,ENSG00000093009,9/13/17
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+ S,ENSG00000094804,9/13/17
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+ S,ENSG00000276043,9/13/17