cubevis 1.0.3__py3-none-any.whl → 1.0.4__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- cubevis/__init__.py +1 -1
- cubevis/__js__/bokeh-3.8/cubevisjs.min.js +5 -5
- cubevis/__version__.py +1 -1
- cubevis/private/apps/__init__.py +2 -2
- cubevis/private/apps/{_interactivecleanjpy.mustache → _interactivecleannotebook.mustache} +2 -2
- cubevis/private/apps/{_interactivecleanjpy.py → _interactivecleannotebook.py} +2 -2
- cubevis/private/casatasks/__init__.py +0 -1
- cubevis/private/casatasks/iclean.py +4 -0
- cubevis/utils/__init__.py +63 -23
- {cubevis-1.0.3.dist-info → cubevis-1.0.4.dist-info}/METADATA +1 -1
- {cubevis-1.0.3.dist-info → cubevis-1.0.4.dist-info}/RECORD +13 -14
- cubevis/private/casatasks/icleanjpy.py +0 -1831
- {cubevis-1.0.3.dist-info → cubevis-1.0.4.dist-info}/WHEEL +0 -0
- {cubevis-1.0.3.dist-info → cubevis-1.0.4.dist-info}/licenses/LICENSE +0 -0
cubevis/__init__.py
CHANGED
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@@ -54,7 +54,7 @@ if _os.getenv('CUBEVIS_DEBUG', '').lower() in ('1', 'true', 'yes', 'on'):
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else:
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logger.setLevel(_logging.INFO)
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from .private.apps import iclean
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from .private.apps import iclean
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def xml_interface_defs( ):
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'''This function may eventually return XML files for use in generating casashell bindings. An
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}
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})
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({
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"0a6f8c037f": function _(a,e,t,o,c){o();const i=a("tslib"),n=a("
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"0a6f8c037f": function _(a,e,t,o,c){o();const i=a("tslib"),n=a("5108a98ed0");c("DataPipe",n.DataPipe);const s=a("2889e0dd45");c("ImagePipe",s.ImagePipe);const p=a("de65005924");c("ImageDataSource",p.ImageDataSource);const r=a("02e3c3e46c");c("SpectraDataSource",r.SpectraDataSource);const S=a("64b16deff9");c("UpdatableDataSource",S.UpdatableDataSource);const l=a("b6ae454f0d");c("WcsTicks",l.WcsTicks);const d=a("cb7d28d6b3");c("DragTool",d.DragTool);const D=a("9d3c34ff8e");c("CBResetTool",D.CBResetTool);const T=a("e3901fa9f2");c("serialize",T.serialize),c("deserialize",T.deserialize);const u=a("9f961622ce");c("TipButton",u.TipButton);const b=a("ca4c845905");c("Tip",b.Tip);const f=a("5e5f767c53");c("Showable",f.Showable);const g=a("50a1e32f01");c("SharedDict",g.SharedDict);const E=a("b55081402e");c("EditSpan",E.EditSpan);const I=a("9144bfc7a5");c("EvTextInput",I.EvTextInput);const P=a("74e0abef8a");c("EvPolyAnnotation",P.EvPolyAnnotation);const m=i.__importStar(a("44f332a4cc"));t.find=m;(0,a("@bokehjs/base").register_models)({DataPipe:n.DataPipe,ImagePipe:s.ImagePipe,ImageDataSource:p.ImageDataSource,SpectraDataSource:r.SpectraDataSource,UpdatableDataSource:S.UpdatableDataSource,WcsTicks:l.WcsTicks,DragTool:d.DragTool,CBResetTool:D.CBResetTool,Tip:b.Tip,TipButton:u.TipButton,SharedDict:g.SharedDict,Showable:f.Showable,EditSpan:E.EditSpan,EvTextInput:I.EvTextInput,EvPolyAnnotation:P.EvPolyAnnotation})},
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"5108a98ed0": function _(e,s,t,i,n){var o;i();const a=e("@bokehjs/models/sources/data_source"),c=e("e3901fa9f2"),r=e("@bokehjs/core/util/callbacks");class l extends a.DataSource{constructor(e){super(e),this.send_queue={},this.connection_queue=[],this.pending={},this.incoming_callbacks={},this.session_id=casalib.object_id(this)}isJupyterContext(){return void 0!==window.Jupyter||void 0!==window._jupyter_labextension_metadata||null!==window.frameElement&&window.parent!==window}checkSessionConflict(){try{if("undefined"==typeof Storage)return console.warn("localStorage not available, skipping session conflict detection"),!0;const e=localStorage.getItem(this.session_storage_key);if(e){const s=JSON.parse(e);if(s.sessionId!==this.session_id&&Date.now()-s.timestamp<12e4){if(!this.isJupyterContext()){const e=`CubeVis DataPipe (${this.instance_key}) is already running in another browser window or tab.\n\nPlease close other instances and refresh this page, or\nclose this window to continue using the other instance.`;return alert(e),window.opener||1===window.history.length?window.close():window.location.href="about:blank",!1}console.group(`DataPipe ${this.instance_key} conflict detected in Jupyter context`),console.log("Current session ID:",this.session_id),console.log("Existing session ID:",s.sessionId),console.log("Existing timestamp:",new Date(s.timestamp).toISOString()),console.log("Age of existing session (ms):",Date.now()-s.timestamp),console.log("Address:",this.address),console.log("Instance key:",this.instance_key),console.log("Storage key:",this.session_storage_key),console.log("Existing data:",s),console.log("All localStorage keys:",Object.keys(localStorage).filter((e=>e.startsWith("cubevis_datapipe_")))),console.groupEnd()}}return this.updateSessionHeartbeat(),!0}catch(e){return console.warn("Session conflict detection failed:",e),!0}}updateSessionHeartbeat(){try{"undefined"!=typeof Storage&&localStorage.setItem(this.session_storage_key,JSON.stringify({sessionId:this.session_id,timestamp:Date.now(),instanceKey:this.instance_key}))}catch(e){console.warn("Session heartbeat update failed:",e)}}startHeartbeat(){this.heartbeat_interval=window.setInterval((()=>{this.updateSessionHeartbeat()}),3e4)}stopHeartbeat(){this.heartbeat_interval&&(clearInterval(this.heartbeat_interval),this.heartbeat_interval=void 0)}cleanupSession(){try{if("undefined"!=typeof Storage){const e=localStorage.getItem(this.session_storage_key);if(e){JSON.parse(e).sessionId===this.session_id&&localStorage.removeItem(this.session_storage_key)}}}catch(e){console.warn("Session cleanup failed:",e)}this.stopHeartbeat()}handleSessionConflictMessage(e){console.error("Session conflict detected by server:",e);let s="Session conflict detected by server.";"session_conflict"===e.type?s=e.error||s:"session_corruption"===e.type&&(s=`Session corruption detected.\nExpected: ${e.expected}\nReceived: ${e.received}`),alert(s+"\n\nThis window will be closed to prevent data corruption."),this.cleanupSession();const t=new CustomEvent("cubevis_session_conflict",{detail:{message:e,sessionId:this.session_id}});window.dispatchEvent(t),setTimeout((()=>{window.opener||1===window.history.length?window.close():window.location.href="about:blank"}),2e3)}generateInstanceKey(){return`${this.address[0]}_${this.address[1]}`}initialize(){if(super.initialize(),this.instance_key=this.generateInstanceKey(),this.session_storage_key=`cubevis_datapipe_${this.instance_key}`,!this.checkSessionConflict())return;let e=`ws://${this.address[0]}:${this.address[1]}`;console.log("datapipe url:",e);var s=void 0;document.shutdown_in_progress_=!1;var t=()=>{void 0!==this.websocket&&this.websocket.close(),this.websocket=new WebSocket(e),this.websocket.binaryType="arraybuffer",this.websocket.addEventListener("error",(e=>{console.log("error encountered:",e)})),this.websocket.onmessage=e=>{if("string"==typeof e.data||e.data instanceof String){let s=(0,c.deserialize)(e.data);if("id"in s&&"direction"in s&&"message"in s){let{id:e,message:t,direction:i}=s;if("error"===i&&("session_conflict"===e||e===this.session_id)&&t&&("session_conflict"===t.type||"session_corruption"===t.type||"close_duplicate"===t.action))return void this.handleSessionConflictMessage(t);if(void 0===t&&console.log("Error, event failure",s),"j2p"==i)if(e in this.pending){let{cb:i}=this.pending[e];if(delete this.pending[e],e in this.send_queue&&this.send_queue[e].length>0){let{cb:s,msg:t}=this.send_queue[e].shift();this.pending[e]={cb:s},this.websocket.send((0,c.serialize)(t))}void 0===t?console.log("DROPPING ERROR FOR NOW (maybe need error callbacks)",s):i(t)}else console.log("message received but could not find id");else if(e in this.incoming_callbacks){let s=this.incoming_callbacks[e](t);this.websocket.send((0,c.serialize)({id:e,direction:i,message:s,session:this.session_id}))}}else console.log(`datapipe received message without one of 'id', 'message' or 'direction': ${s}`)}else console.log("datapipe received binary data",e.data.byteLength,"bytes")},this.websocket.onopen=()=>{for(s?0==s.connected&&console.log(`connection reestablished at ${new Date}`):(this.websocket.send((0,c.serialize)({id:"initialize",direction:"j2p",session:this.session_id})),this.startHeartbeat()),s=new casalib.ReconnectState;this.connection_queue.length>0;){let e=this.connection_queue.shift();this.send.apply(e[0],e[1])}},this.websocket.onclose=()=>{if(s&&1==s.connected&&(console.log(`connection lost at ${new Date}`),s.connected=!1,!document.shutdown_in_progress_)){console.log(`connection lost at ${new Date}`);var e=s;function i(n){0==s.connected&&(console.log(`${n+1}\treconnection attempt ${new Date}`),t(),e.backoff(),e.retries>0?setTimeout(i,e.timeout,n+1):0==s.connected&&console.log(`aborting reconnection after ${n} attempts ${new Date}`))}i(0)}}};window.addEventListener("beforeunload",(()=>{this.cleanupSession()})),document.addEventListener("visibilitychange",(()=>{"hidden"===document.visibilityState?this.stopHeartbeat():"visible"===document.visibilityState&&(this.updateSessionHeartbeat(),this.startHeartbeat())})),t();(()=>{null!=this.init_script&&(0,r.execute)(this.init_script,this)})()}register(e,s){this.incoming_callbacks[e]=s}send(e,s,t,i=!1){let n={id:e,message:s,direction:"j2p",session:this.session_id};if(!this.websocket||e in this.pending)if(e in this.send_queue)if("boolean"==typeof i&&i&&this.send_queue[e].length>0)this.send_queue[e][0].msg=n,this.send_queue[e][0].cb=t;else if("function"==typeof i&&this.send_queue[e].length>0){let o=!1;for(const a of this.send_queue[e])i(a.msg.message)&&(a.msg=n,a.cb=t,o=!0);o||this.send_queue[e].push({cb:t,msg:n})}else this.send_queue[e].push({cb:t,msg:n});else this.send_queue[e]=[{cb:t,msg:n}];else if(this.websocket.readyState===WebSocket.CONNECTING)this.connection_queue.push([this,[e,s,t]]);else if(e in this.send_queue&&this.send_queue[e].length>0){this.send_queue[e].push({cb:t,msg:n});{let{cb:r,msg:l}=this.send_queue[e].shift();if(this.pending[e]={cb:r},this.websocket.readyState===WebSocket.OPEN)this.websocket.send((0,c.serialize)(l));else{let d=20,h=this;function u(){h.websocket.readyState===WebSocket.OPEN?h.websocket.send((0,c.serialize)(l)):(d-=1,d>0&&setTimeout(u,3e3))}setTimeout(u,3e3)}}}else if(this.websocket.readyState===WebSocket.OPEN)this.pending[e]={cb:t},this.websocket.send((0,c.serialize)(n));else{let g=20,b=this;function p(){b.websocket.readyState===WebSocket.OPEN?(b.pending[e]={cb:t},b.websocket.send((0,c.serialize)(n))):(g-=1,g>0&&setTimeout(p,3e3))}setTimeout(p,3e3)}}}t.DataPipe=l,o=l,l.__name__="DataPipe",l.__module__="cubevis.bokeh.sources._data_pipe",o.define((({Any:e,Tuple:s,String:t,Number:i})=>({init_script:[e,null],address:[s(t,i)]})))},
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"e3901fa9f2": function _(e,r,s,i,o){i();const l=e("@bokehjs/base"),a=e("@bokehjs/core/resolvers"),t=e("@bokehjs/core/serialization/deserializer"),n=e("@bokehjs/core/serialization/serializer"),{deserialize:c}=new class{constructor(){this.resolver=new a.ModelResolver(l.default_resolver),this.deserializer=new t.Deserializer(this.resolver),this.deserialize=e=>{try{return this.deserializer.decode(JSON.parse(e))}catch(r){return console.group("deserialize error"),console.log(e),console.log(r),console.groupEnd(),{}}}}};s.deserialize=c;const{serialize:z}=new class{constructor(){this.serializer=new n.Serializer,this.serialize=e=>JSON.stringify(this.serializer.encode(e))}};s.serialize=z},
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"2889e0dd45": function _(i,e,s,t,n){var a;t();const o=i("@bokehjs/models/sources/column_data_source"),d=i("
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"2889e0dd45": function _(i,e,s,t,n){var a;t();const o=i("@bokehjs/models/sources/column_data_source"),d=i("5108a98ed0");class r extends d.DataPipe{constructor(i){super(i),this.position={},this._wcs=null}initialize(){super.initialize(),this.fits_header_json&&(this._wcs=new casalib.coordtxl.WCSTransform(new casalib.coordtxl.MapKeywordProvider(JSON.parse(this.fits_header_json))))}channel(i,e,s){this.position[s]={index:i};let t={action:"channel",index:i,id:s};super.send(this.dataid,t,(i=>{null!=this._histogram_source&&"hist"in i&&"top"in i.hist&&"bottom"in i.hist&&"left"in i.hist&&"right"in i.hist&&(this._histogram_source.data=i.hist),e(i)}))}spectrum(i,e,s,t=!1){let n={action:"spectrum",index:i,id:s};super.send(this.dataid,n,e,t)}adjust_colormap(i,e,s,t,n=!1){const a={action:"adjust-colormap",bounds:i,transfer:e,id:t};super.send(this.dataid,a,s,n)}refresh(i,e,s=[0,0]){let{index:t}=e in this.position?this.position[e]:{index:s};if(2===t.length){let s={action:"channel",index:t,id:e};super.send(this.dataid,s,i)}else if(3===t.length){let s={action:"spectrum",index:t,id:e};super.send(this.dataid,s,i)}}wcs(){return this._wcs}}s.ImagePipe=r,a=r,r.__name__="ImagePipe",r.__module__="cubevis.bokeh.sources._image_pipe",a.define((({Number:i,Nullable:e,String:s,Tuple:t,Ref:n})=>({dataid:[s],shape:[t(i,i,i,i)],fits_header_json:[e(s),null],_histogram_source:[e(n(o.ColumnDataSource)),null]})))},
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"de65005924": function _(s,a,t,c,i){var o;c();const e=s("@bokehjs/models/sources/column_data_source"),n=s("@bokehjs/core/util/string"),u=s("2889e0dd45"),h=s("@bokehjs/core/util/callbacks");class r extends e.ColumnDataSource{constructor(s){super(s),this.imid=(0,n.uuid4)()}_mask_contour(s){const a=casalib.d3.contours().size(this.image_source.shape.slice(0,2)).thresholds([1])(s[0])[0].coordinates.map((s=>s.map((s=>s.reduce(((s,a)=>(s[0].push(a[0]),s[1].push(a[1]),s)),[[],[]])))));return{xs:[a.map((s=>s.map((s=>s[0]))))],ys:[a.map((s=>s.map((s=>s[1]))))]}}initialize(){if(super.initialize(),null!=this._mask_contour_source&&"msk"in this.data&&this.data.msk.length>0&&this.data.msk[0].length>0){const s=this.data.msk;this._mask_contour_source.data=this._mask_contour(s)}void 0===this.last_chan&&(this.last_chan=[this.cur_chan[0].valueOf(),this.cur_chan[1].valueOf()]);(()=>{null!=this.init_script&&(0,h.execute)(this.init_script,this)})()}channel(s,a=0,t){this.image_source.channel([a,s],(c=>{void 0!==c&&void 0!==c.chan||console.log("ImageDataSource ERROR ENCOUNTERED <1>",c),this.last_chan=[this.cur_chan[0].valueOf(),this.cur_chan[1].valueOf()],this.cur_chan=[a,s],null!=this._mask_contour_source&&"chan"in c&&"msk"in c.chan&&(c.msk_contour=this._mask_contour(c.chan.msk),this._mask_contour_source.data=c.msk_contour),t&&t(c),this.data=c.chan}),this.imid)}adjust_colormap(s,a,t){this.image_source.adjust_colormap(s,a,t,this.imid,!0)}signal_change(){this.change.emit()}refresh(s){this.image_source.refresh((a=>{void 0!==a&&void 0!==a.chan||console.log("ImageDataSource ERROR ENCOUNTERED <2>",a),null!=this._mask_contour_source&&"chan"in a&&"msk"in a.chan&&(a.msk_contour=this._mask_contour(a.chan.msk),this._mask_contour_source.data=a.msk_contour),s&&s(a),this.data=a.chan}),this.imid,[0,0])}wcs(){return this.image_source.wcs()}}t.ImageDataSource=r,o=r,r.__name__="ImageDataSource",r.__module__="cubevis.bokeh.sources._image_data_source",o.define((({Tuple:s,Number:a,Ref:t,Nullable:c,Any:i})=>({init_script:[i,null],image_source:[t(u.ImagePipe)],_mask_contour_source:[c(t(e.ColumnDataSource)),null],num_chans:[s(a,a)],cur_chan:[s(a,a)]})))},
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"02e3c3e46c": function _(e,s,i,t,r){var a;t();const c=e("@bokehjs/models/sources/column_data_source"),u=e("@bokehjs/core/util/string"),o=e("2889e0dd45");class _ extends c.ColumnDataSource{constructor(e){super(e),this.imid=(0,u.uuid4)()}initialize(){super.initialize()}spectra(e,s,i=0,t=!1){this.image_source.spectrum([e,s,i],(e=>this.data=e.spectrum),this.imid,t)}refresh(){this.image_source.refresh((e=>this.data=e.spectrum),this.imid,[0,0,0])}}i.SpectraDataSource=_,a=_,_.__name__="SpectraDataSource",_.__module__="cubevis.bokeh.sources._spectra_data_source",a.define((({Ref:e})=>({image_source:[e(o.ImagePipe)]})))},
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"64b16deff9": function _(e,s,i,t,a){var n;t();const u=e("@bokehjs/models/sources/column_data_source"),l=e("
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"64b16deff9": function _(e,s,i,t,a){var n;t();const u=e("@bokehjs/models/sources/column_data_source"),l=e("5108a98ed0"),o=e("@bokehjs/core/util/callbacks");class c extends u.ColumnDataSource{constructor(e){super(e)}send(e,s){this.pipe.send(this.session_id.valueOf(),{action:"callback",message:e},(e=>{s("result"in e?e.result:{error:`expected to find a "result" in "${e}"`,msg:e})}))}initialize(){super.initialize();(()=>{null!=this.js_init&&(0,o.execute)(this.js_init,this)})()}}i.UpdatableDataSource=c,n=c,c.__name__="UpdatableDataSource",c.__module__="cubevis.bokeh.sources._updatable_data_source",n.define((({Ref:e,Any:s,String:i})=>({js_init:[s,null],js_update:[s,null],pipe:[e(l.DataPipe)],session_id:[i]})))},
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"b6ae454f0d": function _(s,i,o,t,e){var r;t();const a=s("@bokehjs/models/formatters/tick_formatter"),c=s("de65005924");class l extends a.TickFormatter{constructor(s){super(s),this._axis=null,this._coord="world"}initialize(){super.initialize(),"x"==this.axis||"X"==this.axis||"y"==this.axis||"Y"==this.axis?this._axis="x"==this.axis||"X"==this.axis?"x":"y":console.log("ERROR: WcsTicks formatter created with invalid axis:",this.axis)}doFormat(s){const i=[];if(this._axis&&this.image_source.wcs()&&"world"==this._coord)for(let o=0,t=s.length;o<t;o++)if("x"==this._axis){const t=new casalib.coordtxl.Point2D(Number(s[o]),0);this.image_source.wcs().imageToWorldCoords(t,!1),i.push(new casalib.coordtxl.WorldCoords(t.getX(),t.getY()).format(2e3)[0])}else{const t=new casalib.coordtxl.Point2D(0,Number(s[o]));this.image_source.wcs().imageToWorldCoords(t,!1),i.push(new casalib.coordtxl.WorldCoords(t.getX(),t.getY()).format(2e3)[1])}else for(let o=0,t=s.length;o<t;o++)i.push(""+s[o]);return i}coordinates(s){return s!=this._coord&&("world"!=s&&"pixel"!=s||(this._coord=s)),this._coord}}o.WcsTicks=l,r=l,l.__name__="WcsTicks",l.__module__="cubevis.bokeh.format._wcs_ticks",r.define((({Ref:s,String:i})=>({axis:[i],image_source:[s(c.ImageDataSource)]})))},
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"cb7d28d6b3": function _(i,e,t,o,s){var d;o();const l=i("@bokehjs/models/tools/gestures/gesture_tool"),r=i("949501ff1c"),_=i("44f332a4cc"),m=i("@bokehjs/core/util/callbacks");class a extends l.GestureToolView{_pan_start(i){var e;null===(e=this.model.document)||void 0===e||e.interactive_start(this.plot_view.model);const t=(0,_.px_from_sx)(this.plot_view,i.sx),o=(0,_.py_from_sy)(this.plot_view,i.sy),s=(0,_.dx_from_px)(this.plot_view,t),d=(0,_.dy_from_py)(this.plot_view,o),{start:l}=this.model;l?(0,m.execute)(l,this.model,{sx:t,sy:o,x:s,y:d,delta_x:i.dx,delta_y:-i.dy,shift:"modifiers"in i?i.modifiers.shift:void 0,ctrl:"modifiers"in i?i.modifiers.ctrl:void 0,alt:"modifiers"in i?i.modifiers.alt:void 0}):this.model.trigger_event(new r.DragStart(t,o,s,d,i.dx,-i.dy,i.modifiers))}_pan(i){var e;null===(e=this.model.document)||void 0===e||e.interactive_start(this.plot_view.model);const t=(0,_.px_from_sx)(this.plot_view,i.sx),o=(0,_.py_from_sy)(this.plot_view,i.sy),s=(0,_.dx_from_px)(this.plot_view,t),d=(0,_.dy_from_py)(this.plot_view,o),{move:l}=this.model;l?(0,m.execute)(l,this.model,{sx:t,sy:o,x:s,y:d,delta_x:i.dx,delta_y:-i.dy,shift:"modifiers"in i?i.modifiers.shift:void 0,ctrl:"modifiers"in i?i.modifiers.ctrl:void 0,alt:"modifiers"in i?i.modifiers.alt:void 0}):this.model.trigger_event(new r.Drag(t,o,s,d,i.dx,-i.dy,i.modifiers))}_pan_end(i){const e=(0,_.px_from_sx)(this.plot_view,i.sx),t=(0,_.py_from_sy)(this.plot_view,i.sy),o=(0,_.dx_from_px)(this.plot_view,e),s=(0,_.dy_from_py)(this.plot_view,t),{end:d}=this.model;d?(0,m.execute)(d,this.model,{sx:e,sy:t,x:o,y:s,delta_x:i.dx,delta_y:-i.dy,shift:"modifiers"in i?i.modifiers.shift:void 0,ctrl:"modifiers"in i?i.modifiers.ctrl:void 0,alt:"modifiers"in i?i.modifiers.alt:void 0}):this.model.trigger_event(new r.DragEnd(e,t,o,s,i.dx,-i.dy,i.modifiers))}}t.DragToolView=a,a.__name__="DragToolView";class n extends l.GestureTool{constructor(i){super(i),this.tool_name="Drag",this.event_type="pan",this.default_order=10}}t.DragTool=n,d=n,n.__name__="DragTool",n.__module__="cubevis.bokeh.tools._drag_tool",d.prototype.default_view=a,d.define((({Any:i,Nullable:e})=>({start:[e(i),null],move:[e(i),null],end:[e(i),null]})))},
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|
54
54
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"949501ff1c": function _(e,t,a,s,n){s();const _=e("@bokehjs/core/bokeh_events");class r extends _.Pan{}a.Drag=r,r.__name__="Drag";class l extends _.PanStart{constructor(e,t,a,s,n,_,r){super(e,t,a,s,r),this.delta_x=n,this.delta_y=_}get event_values(){const{delta_x:e,delta_y:t}=this;return Object.assign(Object.assign({},super.event_values),{delta_x:e,delta_y:t})}}a.DragStart=l,l.__name__="DragStart";class d extends _.PanEnd{constructor(e,t,a,s,n,_,r){super(e,t,a,s,r),this.delta_x=n,this.delta_y=_}get event_values(){const{delta_x:e,delta_y:t}=this;return Object.assign(Object.assign({},super.event_values),{delta_x:e,delta_y:t})}}a.DragEnd=d,d.__name__="DragEnd"},
|
|
@@ -61,4 +61,4 @@
|
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61
61
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"b55081402e": function _(e,n,t,_,s){var a;_();const o=e("@bokehjs/models/annotations/span"),p=e("@bokehjs/core/bokeh_events");class r extends o.SpanView{on_pan_start(e){const n=super.on_pan_start(e);return this.model.trigger_event(new p.LODStart),n}on_pan(e){super.on_pan(e)}on_pan_end(e){super.on_pan_end(e),this.model.trigger_event(new p.LODEnd)}}t.EditSpanView=r,r.__name__="EditSpanView";class d extends o.Span{constructor(e){super(e)}}t.EditSpan=d,a=d,d.__name__="EditSpan",d.__module__="cubevis.bokeh.models._edit_span",a.prototype.default_view=r},
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"9144bfc7a5": function _(e,t,s,n,r){var i;n();const l=e("@bokehjs/models/widgets/text_input"),o=e("@bokehjs/core/dom"),u=e("@bokehjs/core/bokeh_events");class _ extends l.TextInputView{stylesheets(){return[...super.stylesheets(),new o.InlineStyleSheet(".bk-input-prefix { padding: 0 var(--padding-vertical); }")]}connect_signals(){super.connect_signals(),this.el.addEventListener("mouseenter",(e=>{this.model.trigger_event(new u.MouseEnter(e.screenX,e.screenY,e.x,e.y,{shift:e.shiftKey,ctrl:e.ctrlKey,alt:e.altKey}))})),this.el.addEventListener("mouseleave",(e=>{this.model.trigger_event(new u.MouseLeave(e.screenX,e.screenY,e.x,e.y,{shift:e.shiftKey,ctrl:e.ctrlKey,alt:e.altKey}))}))}render(){super.render()}}s.EvTextInputView=_,_.__name__="EvTextInputView";class c extends l.TextInput{constructor(e){super(e)}}s.EvTextInput=c,i=c,c.__name__="EvTextInput",c.__module__="cubevis.bokeh.models._ev_text_input",i.prototype.default_view=_},
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"74e0abef8a": function _(e,t,n,s,o){var i;s();const r=e("@bokehjs/models/annotations/poly_annotation"),a=e("@bokehjs/core/bokeh_events");class _ extends r.PolyAnnotationView{on_enter(e){const{x_scale:t,y_scale:n}=this.plot_view.frame,s=new a.MouseEnter(e.sx,e.sy,t.invert(e.sx),n.invert(e.sy),{shift:e.modifiers.shift,ctrl:e.modifiers.ctrl,alt:e.modifiers.alt}),o=super.on_enter(e);return this.model.trigger_event(s),o}on_leave(e){const{x_scale:t,y_scale:n}=this.plot_view.frame,s=new a.MouseLeave(e.sx,e.sy,t.invert(e.sx),n.invert(e.sy),{shift:e.modifiers.shift,ctrl:e.modifiers.ctrl,alt:e.modifiers.alt});super.on_leave(e),this.model.trigger_event(s)}on_pan_start(e){const{x_scale:t,y_scale:n}=this.plot_view.frame,s=new a.PanStart(e.sx,e.sy,t.invert(e.sx),n.invert(e.sy),{shift:e.modifiers.shift,ctrl:e.modifiers.ctrl,alt:e.modifiers.alt}),o=super.on_pan_start(e);return this.model.trigger_event(s),o}on_pan_end(e){const{x_scale:t,y_scale:n}=this.plot_view.frame,s=new a.PanEnd(e.sx,e.sy,t.invert(e.sx),n.invert(e.sy),{shift:e.modifiers.shift,ctrl:e.modifiers.ctrl,alt:e.modifiers.alt});super.on_pan_end(e),this.model.trigger_event(s)}on_pan(e){super.on_pan(e);const t=new a.RangesUpdate(e.sx,e.sx+e.dx,e.sy,e.sy+e.dy);this.model.trigger_event(t)}}n.EvPolyAnnotationView=_,_.__name__="EvPolyAnnotationView";class l extends r.PolyAnnotation{constructor(e){super(e)}}n.EvPolyAnnotation=l,i=l,l.__name__="EvPolyAnnotation",l.__module__="cubevis.bokeh.annotations._ev_poly_annotation",i.prototype.default_view=_},
|
|
64
|
-
}, "0a6f8c037f", {"index":"0a6f8c037f","src/bokeh/sources/data_pipe":"
|
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64
|
+
}, "0a6f8c037f", {"index":"0a6f8c037f","src/bokeh/sources/data_pipe":"5108a98ed0","src/bokeh/util/conversions":"e3901fa9f2","src/bokeh/sources/image_pipe":"2889e0dd45","src/bokeh/sources/image_data_source":"de65005924","src/bokeh/sources/spectra_data_source":"02e3c3e46c","src/bokeh/sources/updatable_data_source":"64b16deff9","src/bokeh/format/wcs_ticks":"b6ae454f0d","src/bokeh/tools/drag_tool":"cb7d28d6b3","src/bokeh/events":"949501ff1c","src/bokeh/util/find":"44f332a4cc","src/bokeh/tools/cbreset_tool":"9d3c34ff8e","src/bokeh/models/tip_button":"9f961622ce","src/bokeh/models/tip":"ca4c845905","src/bokeh/models/showable":"5e5f767c53","src/bokeh/models/shared_dict":"50a1e32f01","src/bokeh/models/edit_span":"b55081402e","src/bokeh/models/ev_text_input":"9144bfc7a5","src/bokeh/annotations/ev_poly_annotation":"74e0abef8a"}, {});});
|
cubevis/__version__.py
CHANGED
|
@@ -1 +1 @@
|
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|
1
|
-
__version__ = '1.0.
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1
|
+
__version__ = '1.0.4'
|
cubevis/private/apps/__init__.py
CHANGED
|
@@ -42,9 +42,9 @@ sys.modules[__name__].__class__ = ImportProtectedModule( __name__, { 'plotants':
|
|
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42
42
|
'CreateMask': '._createmask',
|
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43
43
|
'CreateRegion': '._createregion',
|
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44
44
|
'InteractiveClean': '._interactiveclean',
|
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45
|
-
'
|
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45
|
+
'InteractiveCleanNotebook': '._interactivecleannotebook',
|
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46
46
|
'iclean': '..casatasks.iclean',
|
|
47
|
-
'
|
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47
|
+
'iclean_notebook': '..casatasks.iclean_notebook',
|
|
48
48
|
'createmask': '..casatasks.createmask',
|
|
49
49
|
'createregion': '..casatasks.createregion',
|
|
50
50
|
} )
|
|
@@ -43,8 +43,8 @@ from cubevis.utils import find_pkg, load_pkg
|
|
|
43
43
|
from cubevis.toolbox import InteractiveCleanUI
|
|
44
44
|
from cubevis import exe
|
|
45
45
|
|
|
46
|
-
class
|
|
47
|
-
r'''
|
|
46
|
+
class InteractiveCleanNotebook:
|
|
47
|
+
r'''InteractiveCleanNotebook(...) implements interactive clean using Bokeh
|
|
48
48
|
{{docstring}}
|
|
49
49
|
'''
|
|
50
50
|
|
|
@@ -42,8 +42,8 @@ from cubevis.utils import find_pkg, load_pkg
|
|
|
42
42
|
from cubevis.toolbox import InteractiveCleanUI
|
|
43
43
|
from cubevis import exe
|
|
44
44
|
|
|
45
|
-
class
|
|
46
|
-
r'''
|
|
45
|
+
class InteractiveCleanNotebook:
|
|
46
|
+
r'''InteractiveCleanNotebook(...) implements interactive clean using Bokeh
|
|
47
47
|
tclean ---- Radio Interferometric Image Reconstruction
|
|
48
48
|
|
|
49
49
|
Form images from visibilities and reconstruct a sky model.
|
|
@@ -1828,4 +1828,8 @@ class _iclean:
|
|
|
1828
1828
|
task_result = _end_log( _logging_state_, 'iclean', task_result )
|
|
1829
1829
|
return task_result
|
|
1830
1830
|
|
|
1831
|
+
def notebook( self, *args, **kwargs ):
|
|
1832
|
+
from .iclean_notebook import iclean_notebook
|
|
1833
|
+
return iclean_notebook( *args, **kwargs )
|
|
1834
|
+
|
|
1831
1835
|
iclean = _iclean( )
|
cubevis/utils/__init__.py
CHANGED
|
@@ -104,29 +104,69 @@ def path_to_url(path):
|
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|
104
104
|
else:
|
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105
105
|
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''
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107
|
+
_DEBUG_NOTEBOOK_REUSE_ = False
|
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|
+
if _DEBUG_NOTEBOOK_REUSE_:
|
|
109
|
+
def find_ws_address(address='127.0.0.1'):
|
|
110
|
+
'''Find free port on ``address`` network and return a tuple with ``address`` and port number
|
|
111
|
+
|
|
112
|
+
This function uses the low level socket function to find a free port and return
|
|
113
|
+
a tuple representing the address plus port number.
|
|
114
|
+
|
|
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|
+
Parameters
|
|
116
|
+
----------
|
|
117
|
+
address: str
|
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+
network to be probed for an available port
|
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|
+
|
|
120
|
+
Returns
|
|
121
|
+
-------
|
|
122
|
+
tuple of str and int
|
|
123
|
+
network address (`str`) and port number (`int`)
|
|
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|
+
'''
|
|
125
|
+
sock = socket()
|
|
126
|
+
sock.bind((address, 0))
|
|
127
|
+
result = sock.getsockname()
|
|
128
|
+
sock.close()
|
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|
+
return result
|
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+
else:
|
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|
+
|
|
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|
+
_returned_ports = set()
|
|
133
|
+
|
|
134
|
+
def find_ws_address(address='127.0.0.1'):
|
|
135
|
+
'''Find free port on ``address`` network and return a tuple with ``address`` and port number
|
|
136
|
+
|
|
137
|
+
This function finds a free port that hasn't been returned before in this session.
|
|
138
|
+
It keeps sockets open during the search to guarantee uniqueness, then closes them
|
|
139
|
+
before returning.
|
|
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|
+
|
|
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|
+
Parameters
|
|
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|
+
----------
|
|
143
|
+
address: str
|
|
144
|
+
network to be probed for an available port
|
|
145
|
+
|
|
146
|
+
Returns
|
|
147
|
+
-------
|
|
148
|
+
tuple of str and int
|
|
149
|
+
network address (`str`) and port number (`int`)
|
|
150
|
+
'''
|
|
151
|
+
opened_sockets = []
|
|
152
|
+
try:
|
|
153
|
+
max_attempts = 2500
|
|
154
|
+
for _ in range(max_attempts):
|
|
155
|
+
sock = socket()
|
|
156
|
+
sock.bind((address, 0))
|
|
157
|
+
opened_sockets.append(sock)
|
|
158
|
+
result = sock.getsockname()
|
|
159
|
+
port = result[1]
|
|
160
|
+
|
|
161
|
+
if port not in _returned_ports:
|
|
162
|
+
_returned_ports.add(port)
|
|
163
|
+
return result
|
|
164
|
+
|
|
165
|
+
raise RuntimeError(f"Could not find unused port after {max_attempts} attempts")
|
|
166
|
+
finally:
|
|
167
|
+
# Always close all opened sockets
|
|
168
|
+
for sock in opened_sockets:
|
|
169
|
+
sock.close()
|
|
130
170
|
|
|
131
171
|
def partition(pred, iterable):
|
|
132
172
|
'''Split ``iterable`` into two lists based on ``pred`` predicate.
|
|
@@ -29,10 +29,10 @@ cubevis/__icons__/trash_full.svg,sha256=DAvMdNIDPDcSG3LTYEamonaYJJWGp07S2mAMK7p6
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|
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|
cubevis/__icons__/trash_full_raw.png,sha256=8ChZlNOqnDqmNhNYoqyLiGluYwJSYeQ2UvNLqVUX5hI,68993
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|
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|
cubevis/__icons__/zoom-to-fit.png,sha256=aozGbrkoBX1q9kV0p272bg0YKGje1gIfVBkFZRlLAXs,9592
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|
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31
|
cubevis/__icons__/zoom-to-fit.svg,sha256=NtYorWvH4s68iAMriqCPGuTBX5SsgVN310UXGKDM7i8,1802
|
|
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|
-
cubevis/__init__.py,sha256=
|
|
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|
+
cubevis/__init__.py,sha256=c_7j2VgZ9yeRJOoFlzzQt-bQ_awlBMaaPJPSB0MNfcg,3233
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33
|
cubevis/__js__/bokeh-3.6/cubevisjs.min.js,sha256=F7HjEMjJpJOCCPIuydjOnv4oU1LNjHUJdsho8ZXbTnE,32149
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|
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34
|
cubevis/__js__/bokeh-3.7/cubevisjs.min.js,sha256=pZ6xsZwdiVQ_oQiFN7N9sJDUCwHQy4KekPE5ycuFgn4,31088
|
|
35
|
-
cubevis/__js__/bokeh-3.8/cubevisjs.min.js,sha256=
|
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35
|
+
cubevis/__js__/bokeh-3.8/cubevisjs.min.js,sha256=5r6Y5ONIzSU_thM-yAxCzHItE5icKI7vVYvLzw3tQNc,33108
|
|
36
36
|
cubevis/__js__/casalib.min.js,sha256=J9Uvlat_Vf6cjcvftOG5COk3YH6A371MJ7s5u_ZS2_4,91133
|
|
37
37
|
cubevis/bokeh/__init__.py,sha256=b2Vgszi7sQPFyu2b4fnQzVXk5uX4B9vb59CilQpP31I,1835
|
|
38
38
|
cubevis/bokeh/annotations/__init__.py,sha256=tjDIPKbg-rh7Iu3coFWvmX-j2yNj9KuKmRp1aTo71ww,50
|
|
@@ -82,22 +82,21 @@ cubevis/exe/_mode.py,sha256=s7i19DY_BWESgqKdRQRnQaR5EK52rym4yu2eSylOHgA,139
|
|
|
82
82
|
cubevis/exe/_setting.py,sha256=pND6qyQV69N5Y5pW7E8phesEAaGjDE45ASvUtlHPPUE,92
|
|
83
83
|
cubevis/exe/_task.py,sha256=eslV_iUsDLaDqSkNLNEtzQg73FC9NJJLsPBss5TqFvA,10912
|
|
84
84
|
cubevis/private/_gclean.py,sha256=ExdR6cRxSa6Xne2veGNKhbTtx-tXUIWr2htzEmEZ9Z4,41107
|
|
85
|
-
cubevis/private/apps/__init__.py,sha256=
|
|
85
|
+
cubevis/private/apps/__init__.py,sha256=eQg28HPmEskRVJDQviUyuXroBKpUxocaj0Snk-VBaW4,2927
|
|
86
86
|
cubevis/private/apps/_createmask.py,sha256=kLwb138M3CyZWG2MIv0-1jdpxjpelmroY_85KlSJptA,23592
|
|
87
87
|
cubevis/private/apps/_createregion.py,sha256=OHZzTUaQ8Ofl5xt2mCrhXEDkfED-B3TxL-TCi7EXVeo,26724
|
|
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88
|
cubevis/private/apps/_interactiveclean.mustache,sha256=fM6-8p1DrWcxNHx9YY1zQUn9trfvKqKekJAOHlLZ96o,3776
|
|
89
89
|
cubevis/private/apps/_interactiveclean.py,sha256=QRPqR7uDQhrMz1FZ1E_OvWB6w1p9U0c4s33VMGCgff8,139277
|
|
90
|
-
cubevis/private/apps/
|
|
91
|
-
cubevis/private/apps/
|
|
90
|
+
cubevis/private/apps/_interactivecleannotebook.mustache,sha256=TqWMC2rFHIhwsoz--d0RFaKAfPPbvU7wjlwuWHgRhpM,4494
|
|
91
|
+
cubevis/private/apps/_interactivecleannotebook.py,sha256=0N65GJG4D9vKWnl1lMNpNuKotQpy8NePkB97cdc-uI8,139995
|
|
92
92
|
cubevis/private/apps/_plotants.py,sha256=top6VWVd_sE48IVPH_sIg3_sQeDl5tadi5DL7r5tUEI,10823
|
|
93
93
|
cubevis/private/apps/_plotbandpass.py,sha256=NwOgKSRnpLw9Pt3KIdBpoV78q1OnjCvj6lWFqeyICt8,185
|
|
94
94
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cubevis/private/casashell/createmask.py,sha256=C1eSUUsttSGghjZ5aDUVhRxnjir5MlYXVyxzEYLcI3k,14457
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cubevis/private/casashell/iclean.py,sha256=yTh2Tv3iE8Ki4xymNhGzuC1x7HPLgB4GBEN3m-HP1wg,294788
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cubevis/private/casatasks/__init__.py,sha256=
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cubevis/private/casatasks/__init__.py,sha256=Uzt9uNiTl0ORavzuoIDJ8gfYUhdWwAAj1D2VJ3wAvvQ,1333
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cubevis/private/casatasks/createmask.py,sha256=qtp8IvFCB1BG2pqRbyP8CmTr-RRqLMBSjMIO86mZ7WA,3770
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cubevis/private/casatasks/createregion.py,sha256=f2KIrkbbdczZk3EHd3x9ZTUaewdjSxlRge-Es8BivNk,3355
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cubevis/private/casatasks/iclean.py,sha256=
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cubevis/private/casatasks/icleanjpy.py,sha256=xOB2uDJynFjh6uSu_t8peEumOSVbLsx0kxc3eIraQMw,153028
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99
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+
cubevis/private/casatasks/iclean.py,sha256=hGGMDUx4adf31ETA6dBWfF5NwKUcGiAk9YlaEjzIFR8,153145
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cubevis/readme.rst,sha256=XSMU01Dfx1NULFjEZya-8QKHhQA_MRWsUjsNJFKsaZ4,595
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cubevis/remote/__init__.py,sha256=0LgSfWUw8cYnVrOYGq3o15tWJPkgcvTyYIrvRSAW6N8,1233
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cubevis/remote/_gclean.py,sha256=TpmCmCUtMjqOFnA2wtYdp4EJo-59DyI00aaTWQbMQU4,1930
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@@ -111,7 +110,7 @@ cubevis/toolbox/_interactive_clean_ui.py,sha256=XKSrU1AK2YYrWQBjWbFe-dbuemHUZeCs
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cubevis/toolbox/_interactiveclean_wrappers.py,sha256=XqyCGz33CMDhszTxnwZ_3-64GszUK1XYnGKUOxl9sas,5071
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cubevis/toolbox/_region_list.py,sha256=_1RvnXwqMoaAq8CPy-6IyhabLi_snXqO566onehI2y0,8957
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cubevis/utils/_ResourceManager.py,sha256=SaaR29etabRiKxmUK-aWvAm4v_OPFJH8CX7bNFm0Lgo,3410
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cubevis/utils/__init__.py,sha256
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cubevis/utils/__init__.py,sha256=-hSFUv8F4DgpbtZY3uznn65cuMoqsYxvb17U9iC_E9Y,27994
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cubevis/utils/_browser.py,sha256=rmJ8_wq6XqhXZmVdmWI4t736qB-zd7ZbzfjVdVz40eY,261
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cubevis/utils/_contextmgrchain.py,sha256=r5SrCBdgQIVH7zXKOmq5oWhDUSeHaZpgsIfWFHvb3cQ,2859
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cubevis/utils/_conversion.py,sha256=SziCU8sOGtG7djlY766-MeOvnQgvT9C737FEfJ4aYsE,3262
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@@ -125,8 +124,8 @@ cubevis/utils/_pkgs.py,sha256=mu2CCzndmJZYP81UkFhxveW_CisWLUvagJVolHOEVgM,2294
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cubevis/utils/_regions.py,sha256=TdAg4ZUUyhg3nFmX9_KLboqmc0LkyOdEW8M1WDR5Udk,1669
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cubevis/utils/_static.py,sha256=rN-sqXNqQ5R2M3wmPHU1GPP5OTyyWQlUPRuimCrht-g,2347
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cubevis/utils/_tiles.py,sha256=A9W1X61VOhBMTOKXVajzOIoiV2FBdO5N2SFB9SUpDOo,7336
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cubevis/__version__.py,sha256=
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cubevis-1.0.
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cubevis-1.0.
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cubevis-1.0.
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cubevis-1.0.
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cubevis/__version__.py,sha256=Oi2b5pm3sFbESQW0xgj8kqwDPX_Hxmx4gNILYpLzYqI,21
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128
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+
cubevis-1.0.4.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
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129
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cubevis-1.0.4.dist-info/METADATA,sha256=9_NTF2jM4qQkkg6pO8H-JoG4lsEt_iJJGmbjnYucgmU,2628
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130
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+
cubevis-1.0.4.dist-info/licenses/LICENSE,sha256=IMF9i4xIpgCADf0U-V1cuf9HBmqWQd3qtI3FSuyW4zE,26526
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cubevis-1.0.4.dist-info/RECORD,,
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