cubevis 0.5.2__py3-none-any.whl

cubevis-0.5.2.dist-info/METADATA

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+Metadata-Version: 2.1
+Name: cubevis
+Version: 0.5.2
+Summary: visualization toolkit and apps for casa
+License: LGPL
+Author-email: Darrell Schiebel <darrell@schiebel.us>,Pam Harris <pharris@nrao.edu>
+Requires-Python: >=3.10
+Requires-Dist: astropy>=5.1
+Requires-Dist: bokeh==3.6.1
+Requires-Dist: certifi
+Requires-Dist: matplotlib
+Requires-Dist: regions>=0.6
+Requires-Dist: websockets>=10.3
+Description-Content-Type: text/x-rst
+
+casagui - visualization tools and applications for CASA
+=======================================================
+
+This is a **pre-alpha**, **prototype** package. It is *not* useful for external users, and all
+applications being built with it are currently in various phases of *prototyping*.
+
+Introduction
+------------
+
+For some time, the GUIs provided by `CASA <https://casadocs.readthedocs.io/en/latest/>`_ have
+been based upon `Qt <https://www.qt.io/>`_. While Qt works well, the compiled nature of C++
+code made building and distributing the GUIs for each architecture a hurdle. This in turn
+caused the GUIs we developed to tend toward large, monolithic applications which were
+difficult to integrate and control from Python. We first used
+`DBus <https://www.freedesktop.org/wiki/Software/dbus/>`_ to control our Qt application.
+Qt provides a nice interface to DBus, but it became clear that DBus development had slowed
+and that DBus was unlikely to make major inroads outside of the Linux Desktop. At that
+point, we switched to `gRPC <https://grpc.io/>`_. gRPC supports a variety of platforms
+and languages. It also has significant support behind it. However despite the improved
+technology, it was still difficult to incorporate a scripting interface which allowed a
+stand-alone C++/Qt process to be controlled by a separate Python process at a low enough
+level to be practically useful for control at the level of granularity we desire.
+
+Similar to the CASA visualization development experience, the CASA framework as a whole
+has experienced the ups and downs of the large C++ development experience. Experience
+with a Python parallelization trade study which CASA conducted indicated that the loss
+of CPU throughput in a switch from C++ to pure Python can be made up for in gains made
+in the selection of parallelization framework like `Dask <https://www.dask.org/>`_ along
+with just in time compilation with something like `Numba <http://numba.pydata.org/>`_.
+In addition to the focus of the trade study, additional gains are possible by mixing
+in GPU resources.
+
+These experiences have led CASA to begin a multi-year transition from being a large
+C++ framework attached to Python to being a pure-Python framework for processing
+radio astronomy data. This package is visualization portion of that transition.
+
+After an abbreviated trade study where we considered a few pure-Python visualization
+frameworks, we selected `Bokeh <https://docs.bokeh.org/en/latest/>`_ as the basis
+for creating new visualization infrastructure for CASA. The choice of Bokeh was made
+based upon its extensibility, its community support (including
+`NumFocus <https://numfocus.org/project/bokeh>`_), and its limited external dependencies
+(just JavaScript and a modern web browser). A stand-alone application can be created
+by using the
+`Bokeh server <https://docs.bokeh.org/en/latest/docs/reference/command/subcommands/serve.html>`_.
+These options allow for GUIs to be created and used interactively from a Python
+command line session, as a stand-alone mini web server, integrated into a desktop
+application (using `Electron <https://www.electronjs.org/>`_) or as part of a
+`Jupyter Notebook <https://jupyter.org/>`_.
+
+Beyond this architectural flexibility, our intention is to create a toolbox of
+Bokeh based components which can be combined to create a collection of visualization
+tools which can be used in each of these settings (Python command line, Notebook
+and desktop application) so that we maintain smaller, reusable tools instead of very
+large monolithic applications. *Interactive clean* is our path-finder application of
+this approach and is currently the only example available.
+
+Installation
+------------
+
+casagui is available `from PyPI <https://pypi.org/project/casagui/>`_.
+
+Interactive Clean
+-----------------
+
+Requirements
+````````````
+
+- Python 3.8 or greater
+
+- casatools and casatasks built from `CAS-13743 <https://open-jira.nrao.edu/browse/CAS-13743>`_
+
+Install
+```````
+
+- :code:`bash$ casa-CAS-13743-2-py3.8/bin/pip3 install casagui`
+
+Caveats
+```````
+
+- Remote access is slow, later a desktop application will be developed (using the same Bokeh
+  toolbox) to improve this situation, but for now if running remotely, it is best to pre-start
+  your preferred browser on the host where you will be running interactive clean. For example
+
+  * :code:`bash$ export BROWSER=/opt/local/bin/firefox`
+
+  * :code:`bash$ $BROWSER > /dev/null 2>&1 &`
+
+- `Konqueror <https://apps.kde.org/konqueror/>`_ does **not** work. We only test with
+  `Chrome <https://www.google.com/chrome/>`_ and
+  `Firefox <https://www.mozilla.org/en-US/firefox/new/>`_.
+
+- :code:`node.js` version 14.0.0 or higher is required
+
+Simple Usage Example
+````````````````````
+
+A simple example of the use of interactive clean is::
+
+  CASA <1>: from casagui.apps import InteractiveClean
+  CASA <2>: InteractiveClean( vis=ms_path, imagename=img, imsize=512, cell='12.0arcsec',
+                    specmode='cube', interpolation='nearest', nchan=5, start='1.0GHz',
+                    width='0.2GHz', pblimit=-1e-05, deconvolver='hogbom', threshold='0.001Jy',
+                    niter=50, cycleniter=10, cyclefactor=3, scales=[0,3,10] )( )
+
+
+In general, the :code:`InteractiveClean` constructor takes a subset of parameters accepted
+by `tclean <https://casadocs.readthedocs.io/en/latest/api/tt/casatasks.imaging.tclean.html>`_.
+All of the masks used in running interactive clean are available from the
+:code:`InteractiveClean` object. To get access to the list of masks, you would create
+the object as a separate statement::
+
+  CASA <2>: ic = InteractiveClean( vis=ms_path, imagename=img, imsize=512, cell='12.0arcsec',
+                    specmode='cube', interpolation='nearest', nchan=5, start='1.0GHz',
+                    width='0.2GHz', pblimit=-1e-05, deconvolver='hogbom', threshold='0.001Jy',
+                    niter=50, cycleniter=10, cyclefactor=3, scales=[0,3,10] )( )
+  CASA <2>: ic( )
+  CASA <3>: print(ic.masks( ))
+
+Visibility Plotting: MsRaster
+-----------------------------
+
+Install
+```````
+
+See https://casagui.readthedocs.io/en/latest/applications/ms_raster.html#installation
+
+Simple Usage Example
+````````````````````
+
+A simple example of the use of MsRaster to create visibility raster plots::
+
+  >>> from casagui.apps import MsRaster
+  >>> msr = MsRaster(ms=myms)
+  >>> msr.plot() # default time vs. baseline plot
+  >>> msr.show() # open plot in browser tab
+

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cubevis-0.5.2.dist-info/WHEEL

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+Root-Is-Purelib: true
+Tag: py3-none-any