cubevis 0.5.2__py3-none-any.whl → 0.5.7__py3-none-any.whl

cubevis/{apps → private/apps}/_interactiveclean.py

@@ -52,9 +52,9 @@ from bokeh.io import reset_output as reset_bokeh_output, output_notebook
 from bokeh.models.dom import HTML
 
 from bokeh.models.ui.tooltips import Tooltip
-from ..bokeh.models import TipButton, Tip, EvTextInput
-from ..utils import resource_manager, reset_resource_manager, is_notebook, find_pkg, load_pkg
-from ..utils import ContextMgrChain as CMC
+from cubevis.bokeh.models import TipButton, Tip, EvTextInput
+from cubevis.utils import resource_manager, reset_resource_manager, is_notebook, find_pkg, load_pkg
+from cubevis.utils import ContextMgrChain as CMC
 
 # pylint: disable=no-name-in-module
 from casatasks.private.imagerhelpers.imager_return_dict import ImagingDict
@@ -66,7 +66,7 @@ from cubevis.utils import find_ws_address, convert_masks
 from cubevis.toolbox import CubeMask, AppContext
 from cubevis.bokeh.utils import svg_icon
 from cubevis.bokeh.sources import DataPipe
-from ..utils import DocEnum
+from cubevis.utils import DocEnum
 
 from ._interactiveclean_wrappers import SharedWidgets
 

cubevis/{apps → private/apps}/_interactiveclean_wrappers.py

@@ -1,5 +1,5 @@
 from bokeh.models import TextInput, Checkbox
-from ..utils import static_vars
+from cubevis.utils import static_vars
 
 ###
 ### These wrappers allow the creation of a SINGLE GUI element that is shared across multiple

cubevis/private/casashell/createmask.py

@@ -35,7 +35,7 @@ from casatools.coercetype import coerce as _coerce
 from casatools.errors import create_error_string
 from casatasks.private.task_logging import start_log as _start_log
 from casatasks.private.task_logging import end_log as _end_log
-from cubevis.apps import InteractiveClean
+from cubevis.private.apps import InteractiveClean
 from collections import OrderedDict
 import numpy
 import sys

cubevis/private/casashell/iclean.py

@@ -35,7 +35,7 @@ from casatools.coercetype import coerce as _coerce
 from casatools.errors import create_error_string
 from casatasks.private.task_logging import start_log as _start_log
 from casatasks.private.task_logging import end_log as _end_log
-from cubevis.apps import InteractiveClean
+from cubevis.private.apps import InteractiveClean
 from collections import OrderedDict
 import numpy
 import sys

cubevis/private/casatasks/createmask.py

@@ -36,7 +36,7 @@ from casatools.errors import create_error_string
 from casatasks.private.task_logging import start_log as _start_log
 from casatasks.private.task_logging import end_log as _end_log
 from casatasks.private.task_logging import except_log as _except_log
-from cubevis.apps import CreateMask
+from cubevis.private.apps import CreateMask
 
 def _createmask_t( *args, **kwargs ):
     cm = CreateMask( *args, **kwargs )

cubevis/private/casatasks/createregion.py

@@ -36,7 +36,7 @@ from casatools.errors import create_error_string
 from casatasks.private.task_logging import start_log as _start_log
 from casatasks.private.task_logging import end_log as _end_log
 from casatasks.private.task_logging import except_log as _except_log
-from cubevis.apps import CreateRegion
+from cubevis.private.apps import CreateRegion
 
 def _createregion_t( *args, **kwargs ):
     cm = CreateRegion( *args, **kwargs )

cubevis/private/casatasks/iclean.py

@@ -36,7 +36,7 @@ from casatools.errors import create_error_string
 from casatasks.private.task_logging import start_log as _start_log
 from casatasks.private.task_logging import end_log as _end_log
 from casatasks.private.task_logging import except_log as _except_log
-from cubevis.apps import InteractiveClean
+from cubevis.private.apps import InteractiveClean
 
 def _iclean_t( *args, **kwargs ):
     ic = InteractiveClean( *args, **kwargs )

cubevis/utils/_import_protected_module.py

@@ -9,7 +9,7 @@ def ImportProtectedModule( name, file_mapping ):
         """Import objects, functions and classes for export while avoiding requiring user to
            provide the sub-package name for the file contining the imported object, for example
            allowing:
-                         from cubevis.apps import iclean
+                         from cubevis import iclean
 
            instead of:
                          from cubevis.app._interactive_clean import iclean

cubevis-0.5.7.dist-info/METADATA

@@ -0,0 +1,51 @@
+Metadata-Version: 2.1
+Name: cubevis
+Version: 0.5.7
+Summary: visualization toolkit and apps for casa
+License: LGPL
+Author-email: Darrell Schiebel <darrell@schiebel.us>,Pam Harris <pharris@nrao.edu>
+Requires-Python: >=3.10
+Requires-Dist: astropy>=5.1
+Requires-Dist: bokeh==3.6.1
+Requires-Dist: certifi
+Requires-Dist: matplotlib
+Requires-Dist: regions>=0.6
+Requires-Dist: websockets>=10.3
+Description-Content-Type: text/x-rst
+
+cubevis - visualization tools for CASA images
+=============================================
+
+This is a **beta-release** quality package. This package relies on the
+`CASA <https://casadocs.readthedocs.io/en/stable/index.html>`_ data processing system
+for radio telescopes as the processing backend while providing control and visualization
+using `Bokeh <https://bokeh.org/>`_.
+
+Introduction
+------------
+
+These tools are primarily based on `Bokeh <https://bokeh.org/>`_. The GUIs use Python
+and CASA to provide image access while a generated JavaScript interface provides a control
+front-end.
+
+Interactive Clean
+-----------------
+
+Interactive clean is the primary application provided by this package. It allows for
+visualizally observing and controlling the image reconstruction performed by
+`CASA <https://casadocs.readthedocs.io/en/stable/index.html>`_. The primary CASA
+`tasks <https://casadocs.readthedocs.io/en/stable/api/casatasks.html>`_ used to
+perform the image reconstruction are
+`tclean <https://casadocs.readthedocs.io/en/stable/api/tt/casatasks.imaging.tclean.html>`_ and
+`deconvolve <https://casadocs.readthedocs.io/en/stable/api/tt/casatasks.imaging.deconvolve.html>`_.
+
+Usage
+^^^^^
+
+This example provide a summary of how to use interactive clean from Python
+
+
+For this sample, the test measurement set is
+`available <https://casa.nrao.edu/download/devel/casavis/data/refim_twopoints_twochan-ms.tar.gz>`_,
+while the `outlierfile` would look something like
+

{cubevis-0.5.2.dist-info → cubevis-0.5.7.dist-info}/RECORD

@@ -24,20 +24,12 @@ cubevis/__icons__/sub-cube.png,sha256=mtv21frhc_GuXsfDlUa-0xQzym3Ii4TZiQGm4MFYjr
 cubevis/__icons__/sub-cube.svg,sha256=tDCFZ2Es6b8HTiBpgLPG0cOOnlS8dI7LbE2KQxEWFw4,6391
 cubevis/__icons__/zoom-to-fit.png,sha256=aozGbrkoBX1q9kV0p272bg0YKGje1gIfVBkFZRlLAXs,9592
 cubevis/__icons__/zoom-to-fit.svg,sha256=NtYorWvH4s68iAMriqCPGuTBX5SsgVN310UXGKDM7i8,1802
-cubevis/__init__.py,sha256=-j-68b97SOoKc_xToz5ESMr7RHOfy6b5vSHlQGJQ96k,2597
+cubevis/__init__.py,sha256=uLahNBl4y3LitACJmbSWsn_aI9bpXk085MIcbIFZ2pk,2632
 cubevis/__js__/bokeh-3.6.1.min.js,sha256=SPRs94Q-H-aj8MCsXNu4ok1ouQQLTgXxZnk0-BBAOl4,1092280
 cubevis/__js__/bokeh-tables-3.6.1.min.js,sha256=wINufoBiINmP_PERwhN_1GkidJOsJQ_3vFKUDui7rl8,301216
 cubevis/__js__/bokeh-widgets-3.6.1.min.js,sha256=NE3tFbbxoaMjnJ0XednWJxbAGl-vSR0fxE_kX8keuDQ,311821
 cubevis/__js__/casalib.min.js,sha256=JLZ_3i5JlbNJw2nsx7pewysxzoD3sVpSiWdgJCLbhi0,91107
 cubevis/__js__/cubevisjs.min.js,sha256=fU2O_iQAIKl79r8rfADaTq5R-tMy33YqimE3U-UHXGE,27545
-cubevis/apps/__init__.py,sha256=1kwOspD7uL8SXSxnT-MBaA-wDxW5T8mJwxOmyrkTcww,2522
-cubevis/apps/_createmask.py,sha256=bKFpME5MYhLh7HxlJZINBTwG25t0_T_d1nYrWYAWYPA,23527
-cubevis/apps/_createregion.py,sha256=ujLQeXl-afooRU0YLcJ43FMMDMU37SoHtuPJnwNHcEw,26667
-cubevis/apps/_interactiveclean.py,sha256=l_3xPNfCFL7bNmNL4C4x584hG7lj1BwB1vZrxy1cSD4,241438
-cubevis/apps/_interactiveclean_wrappers.py,sha256=ALbIQBOyxKqKJy_MUIqIUVwcyVzNFDOjtI1ysx4Stkk,5065
-cubevis/apps/_ms_raster.py,sha256=fAE3-qaqD4N2o6TyR_eD1r8IXDJL_tu03WpR2e4gMSM,36511
-cubevis/apps/_plotants.py,sha256=top6VWVd_sE48IVPH_sIg3_sQeDl5tadi5DL7r5tUEI,10823
-cubevis/apps/_plotbandpass.py,sha256=NwOgKSRnpLw9Pt3KIdBpoV78q1OnjCvj6lWFqeyICt8,185
 cubevis/bokeh/__init__.py,sha256=XvuKcU9-bAv1CPb_O81VJTNLlHQC-zBg_Ig9_q4RkM4,1371
 cubevis/bokeh/annotations/__init__.py,sha256=tjDIPKbg-rh7Iu3coFWvmX-j2yNj9KuKmRp1aTo71ww,50
 cubevis/bokeh/annotations/_ev_poly_annotation.py,sha256=0ayX21gxNnm5-4s5VRKiaJ23DCSvbvpsU6oym9q2bk0,173
@@ -98,12 +90,21 @@ cubevis/plot/ms_plot/_raster_plot_inputs.py,sha256=yUFob7t4JMXTwHjzNWZMEMLCvQdJ5
 cubevis/plot/ms_plot/_xds_plot_axes.py,sha256=EeWvAbiKV33nEWdI8V3M0uwLTnycq4bFYBOyVWkxCu0,4429
 cubevis/private/__java__/xml-casa-assembly-1.86.jar,sha256=dBT_OxPtczAfWKRaOrHWwNZbDfEjtKkuQGuFOaKOczA,8041045
 cubevis/private/_gclean.py,sha256=ExdR6cRxSa6Xne2veGNKhbTtx-tXUIWr2htzEmEZ9Z4,41107
-cubevis/private/casashell/createmask.py,sha256=97KEGpSXtTs1ODrFuox_0Q6us6oP3OKIiD7nk6o717I,14449
-cubevis/private/casashell/iclean.py,sha256=j5xB7Z89AQcWL_tFYrxK1pbqkMwjTgRD5jBJnBJfNHM,294779
+cubevis/private/apps/__init__.py,sha256=-9U6o-SClwJolGDnFhlH1au4tz-w4HgRcyT4_OQ_Z7E,2510
+cubevis/private/apps/_createmask.py,sha256=bKFpME5MYhLh7HxlJZINBTwG25t0_T_d1nYrWYAWYPA,23527
+cubevis/private/apps/_createregion.py,sha256=ujLQeXl-afooRU0YLcJ43FMMDMU37SoHtuPJnwNHcEw,26667
+cubevis/private/apps/_interactiveclean.mustache,sha256=vjTBSI8BlB8CIopu4oydrgeleOAwCjqWCh3Rwr_AALA,103811
+cubevis/private/apps/_interactiveclean.py,sha256=pGywKaty1rjW5uGblY3Nj5G22lGaOBvDuOM_z560Yps,241462
+cubevis/private/apps/_interactiveclean_wrappers.py,sha256=XqyCGz33CMDhszTxnwZ_3-64GszUK1XYnGKUOxl9sas,5071
+cubevis/private/apps/_ms_raster.py,sha256=fAE3-qaqD4N2o6TyR_eD1r8IXDJL_tu03WpR2e4gMSM,36511
+cubevis/private/apps/_plotants.py,sha256=top6VWVd_sE48IVPH_sIg3_sQeDl5tadi5DL7r5tUEI,10823
+cubevis/private/apps/_plotbandpass.py,sha256=NwOgKSRnpLw9Pt3KIdBpoV78q1OnjCvj6lWFqeyICt8,185
+cubevis/private/casashell/createmask.py,sha256=C1eSUUsttSGghjZ5aDUVhRxnjir5MlYXVyxzEYLcI3k,14457
+cubevis/private/casashell/iclean.py,sha256=FUrCMrfXuTjUHFBA0PVEctDXlHsZrMZBePwZ_otDwxI,294787
 cubevis/private/casatasks/__init__.py,sha256=yLL13GDxSxIkqjjap_sJO_aGVaBUW9gXMwlAlPli97g,6963
-cubevis/private/casatasks/createmask.py,sha256=1p1DJzXFeXgG-zC_2CUJulRAv61tXO3Na2lNg6hsYOc,3762
-cubevis/private/casatasks/createregion.py,sha256=knukE94x5x6j8ym_Mx-0bVXDOUeErp0QctfZo0H-mRE,3347
-cubevis/private/casatasks/iclean.py,sha256=xH5npnMj1QVTFVsxex8iQFJ44A0BVbuPGQxNZdjP668,152989
+cubevis/private/casatasks/createmask.py,sha256=qtp8IvFCB1BG2pqRbyP8CmTr-RRqLMBSjMIO86mZ7WA,3770
+cubevis/private/casatasks/createregion.py,sha256=f2KIrkbbdczZk3EHd3x9ZTUaewdjSxlRge-Es8BivNk,3355
+cubevis/private/casatasks/iclean.py,sha256=YO9RRtWVD3MxizqxTB-7yPD8NkX-mvbsB2yTyRcrvT0,152997
 cubevis/readme.rst,sha256=XSMU01Dfx1NULFjEZya-8QKHhQA_MRWsUjsNJFKsaZ4,595
 cubevis/remote/__init__.py,sha256=0LgSfWUw8cYnVrOYGq3o15tWJPkgcvTyYIrvRSAW6N8,1233
 cubevis/remote/_gclean.py,sha256=TpmCmCUtMjqOFnA2wtYdp4EJo-59DyI00aaTWQbMQU4,1930
@@ -119,14 +120,14 @@ cubevis/utils/_contextmgrchain.py,sha256=r5SrCBdgQIVH7zXKOmq5oWhDUSeHaZpgsIfWFHv
 cubevis/utils/_conversion.py,sha256=SziCU8sOGtG7djlY766-MeOvnQgvT9C737FEfJ4aYsE,3262
 cubevis/utils/_copydoc.py,sha256=SI9DOUoTNg9M-Y4J1oci2Ba1jebGHsx_pFX24RSNg3o,1915
 cubevis/utils/_docenum.py,sha256=D79BvxwW18DPUlIhBx5DnpZh76pDURC1Hqt1DfS7kG0,877
-cubevis/utils/_import_protected_module.py,sha256=ubDVygLLU-PVsEYrP_vd_327eVOE0YhUe5klns29YGE,1487
+cubevis/utils/_import_protected_module.py,sha256=AIISHPdiSzwgVzLXqHSWSHT-L7lcMWbYrsMlGlTFafE,1482
 cubevis/utils/_logging.py,sha256=HqyoTib7QSuAUbzicPVMdhFtxWKo-Dv4GgD0AYDDXIY,2348
 cubevis/utils/_pkgs.py,sha256=mu2CCzndmJZYP81UkFhxveW_CisWLUvagJVolHOEVgM,2294
 cubevis/utils/_regions.py,sha256=TdAg4ZUUyhg3nFmX9_KLboqmc0LkyOdEW8M1WDR5Udk,1669
 cubevis/utils/_static.py,sha256=rN-sqXNqQ5R2M3wmPHU1GPP5OTyyWQlUPRuimCrht-g,2347
 cubevis/utils/_tiles.py,sha256=A9W1X61VOhBMTOKXVajzOIoiV2FBdO5N2SFB9SUpDOo,7336
-cubevis/__version__.py,sha256=LADBavpB8x-lrtqob-7SCQZXFPfLZCu34A0lBsgTGGI,21
-cubevis-0.5.2.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
-cubevis-0.5.2.dist-info/METADATA,sha256=H5lMwxwGdjOXdQEGYcQ_VmkRnANeXmyyMwlOTg_Azu4,6871
-cubevis-0.5.2.dist-info/licenses/LICENSE,sha256=IMF9i4xIpgCADf0U-V1cuf9HBmqWQd3qtI3FSuyW4zE,26526
-cubevis-0.5.2.dist-info/RECORD,,
+cubevis/__version__.py,sha256=jR3u8xyb9ug4uh2IHlgd9VqSEn4enmk3_KpGlQQjNtM,21
+cubevis-0.5.7.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
+cubevis-0.5.7.dist-info/METADATA,sha256=HkC8-O19DulrfDARIluuxyEg53cP7E3-JcLUtmIgETI,1896
+cubevis-0.5.7.dist-info/licenses/LICENSE,sha256=IMF9i4xIpgCADf0U-V1cuf9HBmqWQd3qtI3FSuyW4zE,26526
+cubevis-0.5.7.dist-info/RECORD,,

cubevis-0.5.2.dist-info/METADATA

@@ -1,151 +0,0 @@
-Metadata-Version: 2.1
-Name: cubevis
-Version: 0.5.2
-Summary: visualization toolkit and apps for casa
-License: LGPL
-Author-email: Darrell Schiebel <darrell@schiebel.us>,Pam Harris <pharris@nrao.edu>
-Requires-Python: >=3.10
-Requires-Dist: astropy>=5.1
-Requires-Dist: bokeh==3.6.1
-Requires-Dist: certifi
-Requires-Dist: matplotlib
-Requires-Dist: regions>=0.6
-Requires-Dist: websockets>=10.3
-Description-Content-Type: text/x-rst
-
-casagui - visualization tools and applications for CASA
-=======================================================
-
-This is a **pre-alpha**, **prototype** package. It is *not* useful for external users, and all
-applications being built with it are currently in various phases of *prototyping*.
-
-Introduction
-------------
-
-For some time, the GUIs provided by `CASA <https://casadocs.readthedocs.io/en/latest/>`_ have
-been based upon `Qt <https://www.qt.io/>`_. While Qt works well, the compiled nature of C++
-code made building and distributing the GUIs for each architecture a hurdle. This in turn
-caused the GUIs we developed to tend toward large, monolithic applications which were
-difficult to integrate and control from Python. We first used
-`DBus <https://www.freedesktop.org/wiki/Software/dbus/>`_ to control our Qt application.
-Qt provides a nice interface to DBus, but it became clear that DBus development had slowed
-and that DBus was unlikely to make major inroads outside of the Linux Desktop. At that
-point, we switched to `gRPC <https://grpc.io/>`_. gRPC supports a variety of platforms
-and languages. It also has significant support behind it. However despite the improved
-technology, it was still difficult to incorporate a scripting interface which allowed a
-stand-alone C++/Qt process to be controlled by a separate Python process at a low enough
-level to be practically useful for control at the level of granularity we desire.
-
-Similar to the CASA visualization development experience, the CASA framework as a whole
-has experienced the ups and downs of the large C++ development experience. Experience
-with a Python parallelization trade study which CASA conducted indicated that the loss
-of CPU throughput in a switch from C++ to pure Python can be made up for in gains made
-in the selection of parallelization framework like `Dask <https://www.dask.org/>`_ along
-with just in time compilation with something like `Numba <http://numba.pydata.org/>`_.
-In addition to the focus of the trade study, additional gains are possible by mixing
-in GPU resources.
-
-These experiences have led CASA to begin a multi-year transition from being a large
-C++ framework attached to Python to being a pure-Python framework for processing
-radio astronomy data. This package is visualization portion of that transition.
-
-After an abbreviated trade study where we considered a few pure-Python visualization
-frameworks, we selected `Bokeh <https://docs.bokeh.org/en/latest/>`_ as the basis
-for creating new visualization infrastructure for CASA. The choice of Bokeh was made
-based upon its extensibility, its community support (including
-`NumFocus <https://numfocus.org/project/bokeh>`_), and its limited external dependencies
-(just JavaScript and a modern web browser). A stand-alone application can be created
-by using the
-`Bokeh server <https://docs.bokeh.org/en/latest/docs/reference/command/subcommands/serve.html>`_.
-These options allow for GUIs to be created and used interactively from a Python
-command line session, as a stand-alone mini web server, integrated into a desktop
-application (using `Electron <https://www.electronjs.org/>`_) or as part of a
-`Jupyter Notebook <https://jupyter.org/>`_.
-
-Beyond this architectural flexibility, our intention is to create a toolbox of
-Bokeh based components which can be combined to create a collection of visualization
-tools which can be used in each of these settings (Python command line, Notebook
-and desktop application) so that we maintain smaller, reusable tools instead of very
-large monolithic applications. *Interactive clean* is our path-finder application of
-this approach and is currently the only example available.
-
-Installation
-------------
-
-casagui is available `from PyPI <https://pypi.org/project/casagui/>`_.
-
-Interactive Clean
------------------
-
-Requirements
-````````````
-
-- Python 3.8 or greater
-
-- casatools and casatasks built from `CAS-13743 <https://open-jira.nrao.edu/browse/CAS-13743>`_
-
-Install
-```````
-
-- :code:`bash$ casa-CAS-13743-2-py3.8/bin/pip3 install casagui`
-
-Caveats
-```````
-
-- Remote access is slow, later a desktop application will be developed (using the same Bokeh
-  toolbox) to improve this situation, but for now if running remotely, it is best to pre-start
-  your preferred browser on the host where you will be running interactive clean. For example
-
-  * :code:`bash$ export BROWSER=/opt/local/bin/firefox`
-
-  * :code:`bash$ $BROWSER > /dev/null 2>&1 &`
-
-- `Konqueror <https://apps.kde.org/konqueror/>`_ does **not** work. We only test with
-  `Chrome <https://www.google.com/chrome/>`_ and
-  `Firefox <https://www.mozilla.org/en-US/firefox/new/>`_.
-
-- :code:`node.js` version 14.0.0 or higher is required
-
-Simple Usage Example
-````````````````````
-
-A simple example of the use of interactive clean is::
-
-  CASA <1>: from casagui.apps import InteractiveClean
-  CASA <2>: InteractiveClean( vis=ms_path, imagename=img, imsize=512, cell='12.0arcsec',
-                    specmode='cube', interpolation='nearest', nchan=5, start='1.0GHz',
-                    width='0.2GHz', pblimit=-1e-05, deconvolver='hogbom', threshold='0.001Jy',
-                    niter=50, cycleniter=10, cyclefactor=3, scales=[0,3,10] )( )
-
-
-In general, the :code:`InteractiveClean` constructor takes a subset of parameters accepted
-by `tclean <https://casadocs.readthedocs.io/en/latest/api/tt/casatasks.imaging.tclean.html>`_.
-All of the masks used in running interactive clean are available from the
-:code:`InteractiveClean` object. To get access to the list of masks, you would create
-the object as a separate statement::
-
-  CASA <2>: ic = InteractiveClean( vis=ms_path, imagename=img, imsize=512, cell='12.0arcsec',
-                    specmode='cube', interpolation='nearest', nchan=5, start='1.0GHz',
-                    width='0.2GHz', pblimit=-1e-05, deconvolver='hogbom', threshold='0.001Jy',
-                    niter=50, cycleniter=10, cyclefactor=3, scales=[0,3,10] )( )
-  CASA <2>: ic( )
-  CASA <3>: print(ic.masks( ))
-
-Visibility Plotting: MsRaster
------------------------------
-
-Install
-```````
-
-See https://casagui.readthedocs.io/en/latest/applications/ms_raster.html#installation
-
-Simple Usage Example
-````````````````````
-
-A simple example of the use of MsRaster to create visibility raster plots::
-
-  >>> from casagui.apps import MsRaster
-  >>> msr = MsRaster(ms=myms)
-  >>> msr.plot() # default time vs. baseline plot
-  >>> msr.show() # open plot in browser tab
-