copulas 0.11.0.dev0__py3-none-any.whl → 0.11.1.dev0__py3-none-any.whl

copulas/__init__.py

@@ -4,7 +4,7 @@
 
 __author__ = 'DataCebo, Inc.'
 __email__ = 'info@sdv.dev'
-__version__ = '0.11.0.dev0'
+__version__ = '0.11.1.dev0'
 
 import contextlib
 import importlib
@@ -86,7 +86,8 @@ def validate_random_state(random_state):
     else:
         raise TypeError(
             f'`random_state` {random_state} expected to be an int '
-            'or `np.random.RandomState` object.')
+            'or `np.random.RandomState` object.'
+        )
 
 
 def get_instance(obj, **kwargs):
@@ -192,8 +193,7 @@ def vectorize(function):
 
         if len(X.shape) == 2:
             return np.fromiter(
-                (function(self, *x, *args, **kwargs) for x in X),
-                np.dtype('float64')
+                (function(self, *x, *args, **kwargs) for x in X), np.dtype('float64')
             )
 
         else:
@@ -243,7 +243,6 @@ def check_valid_values(function):
     """
 
     def decorated(self, X, *args, **kwargs):
-
         if isinstance(X, pd.DataFrame):
             W = X.to_numpy()
 
@@ -321,7 +320,7 @@ def _find_addons():
         try:
             addon = entry_point.load()
         except Exception:  # pylint: disable=broad-exception-caught
-            msg = f'Failed to load "{entry_point.name}" from "{entry_point.module_name}".'
+            msg = f'Failed to load "{entry_point.name}" from "{entry_point.value}".'
             warnings.warn(msg)
             continue
 

copulas/bivariate/__init__.py

@@ -47,7 +47,6 @@ def _compute_empirical(X):
         right = sum(np.logical_and(U >= base[k], V >= base[k])) / N
 
         if left > 0:
-
             z_left.append(base[k])
             L.append(left / base[k] ** 2)
 
@@ -151,7 +150,8 @@ def select_copula(X):
 
     left_tail, empirical_left_aut, right_tail, empirical_right_aut = _compute_empirical(X)
     candidate_left_auts, candidate_right_auts = _compute_candidates(
-        copula_candidates, left_tail, right_tail)
+        copula_candidates, left_tail, right_tail
+    )
 
     empirical_aut = np.concatenate((empirical_left_aut, empirical_right_aut))
     candidate_auts = [

copulas/bivariate/base.py

@@ -96,7 +96,7 @@ class Bivariate(object):
             return super(Bivariate, cls).__new__(cls)
 
         if not isinstance(copula_type, CopulaTypes):
-            if (isinstance(copula_type, str) and copula_type.upper() in CopulaTypes.__members__):
+            if isinstance(copula_type, str) and copula_type.upper() in CopulaTypes.__members__:
                 copula_type = CopulaTypes[copula_type.upper()]
             else:
                 raise ValueError(f'Invalid copula type {copula_type}')
@@ -192,11 +192,7 @@ class Bivariate(object):
             dict: Parameters of the copula.
 
         """
-        return {
-            'copula_type': self.copula_type.name,
-            'theta': self.theta,
-            'tau': self.tau
-        }
+        return {'copula_type': self.copula_type.name, 'theta': self.theta, 'tau': self.tau}
 
     @classmethod
     def from_dict(cls, copula_dict):
@@ -297,6 +293,7 @@ class Bivariate(object):
         self.check_fit()
         result = []
         for _y, _v in zip(y, V):
+
             def f(u):
                 return self.partial_derivative_scalar(u, _v) - _y
 
@@ -330,7 +327,7 @@ class Bivariate(object):
             np.ndarray
 
         """
-        delta = (-2 * (X[:, 1] > 0.5) + 1)
+        delta = -2 * (X[:, 1] > 0.5) + 1
         delta = 0.0001 * delta
         X_prime = X.copy()
         X_prime[:, 1] += delta
@@ -411,10 +408,11 @@ class Bivariate(object):
 
         """
         from copulas.bivariate import select_copula  # noqa
+
         warnings.warn(
             '`Bivariate.select_copula` has been deprecated and will be removed in a later '
             'release. Please use `copulas.bivariate.select_copula` instead',
-            DeprecationWarning
+            DeprecationWarning,
         )
         return select_copula(X)
 

copulas/bivariate/clayton.py

@@ -84,9 +84,10 @@ class Clayton(Bivariate):
             cdfs = [
                 np.power(
                     np.power(U[i], -self.theta) + np.power(V[i], -self.theta) - 1,
-                    -1.0 / self.theta
+                    -1.0 / self.theta,
                 )
-                if (U[i] > 0 and V[i] > 0) else 0
+                if (U[i] > 0 and V[i] > 0)
+                else 0
                 for i in range(len(U))
             ]
 

copulas/bivariate/frank.py

@@ -162,6 +162,7 @@ class Frank(Bivariate):
 
     def _tau_to_theta(self, alpha):
         """Relationship between tau and theta as a solvable equation."""
+
         def debye(t):
             return t / (np.exp(t) - 1)
 

copulas/datasets.py

@@ -33,10 +33,7 @@ def sample_bivariate_age_income(size=1000, seed=42):
         income += np.random.normal(loc=np.log(age) / 100, scale=10, size=size)
         income[np.random.randint(0, 10, size=size) == 0] /= 1000
 
-    return pd.DataFrame({
-        'age': age,
-        'income': income
-    })
+    return pd.DataFrame({'age': age, 'income': income})
 
 
 def sample_trivariate_xyz(size=1000, seed=42):
@@ -61,11 +58,7 @@ def sample_trivariate_xyz(size=1000, seed=42):
     with set_random_state(validate_random_state(seed), _dummy_fn):
         x = stats.beta.rvs(a=0.1, b=0.1, size=size)
         y = stats.beta.rvs(a=0.1, b=0.5, size=size)
-        return pd.DataFrame({
-            'x': x,
-            'y': y,
-            'z': np.random.normal(size=size) + y * 10
-        })
+        return pd.DataFrame({'x': x, 'y': y, 'z': np.random.normal(size=size) + y * 10})
 
 
 def sample_univariate_bernoulli(size=1000, seed=42):

copulas/multivariate/__init__.py

@@ -5,10 +5,4 @@ from copulas.multivariate.gaussian import GaussianMultivariate
 from copulas.multivariate.tree import Tree, TreeTypes
 from copulas.multivariate.vine import VineCopula
 
-__all__ = (
-    'Multivariate',
-    'GaussianMultivariate',
-    'VineCopula',
-    'Tree',
-    'TreeTypes'
-)
+__all__ = ('Multivariate', 'GaussianMultivariate', 'VineCopula', 'Tree', 'TreeTypes')

copulas/multivariate/gaussian.py

@@ -8,8 +8,14 @@ import pandas as pd
 from scipy import stats
 
 from copulas import (
-    EPSILON, check_valid_values, get_instance, get_qualified_name, random_state, store_args,
-    validate_random_state)
+    EPSILON,
+    check_valid_values,
+    get_instance,
+    get_qualified_name,
+    random_state,
+    store_args,
+    validate_random_state,
+)
 from copulas.multivariate.base import Multivariate
 from copulas.univariate import GaussianUnivariate, Univariate
 
@@ -149,8 +155,7 @@ class GaussianMultivariate(Multivariate):
         self.check_fit()
         transformed = self._transform_to_normal(X)
 
-        return stats.multivariate_normal.pdf(
-            transformed, cov=self.correlation, allow_singular=True)
+        return stats.multivariate_normal.pdf(transformed, cov=self.correlation, allow_singular=True)
 
     def cumulative_distribution(self, X):
         """Compute the cumulative distribution value for each point in X.

copulas/multivariate/tree.py

@@ -98,7 +98,7 @@ class Tree(Multivariate):
         """
         # first column is the variable of interest
         tau_y = self.tau_matrix[:, y]
-        tau_y[y] = np.NaN
+        tau_y[y] = np.nan
 
         temp = np.empty([self.n_nodes, 3])
         temp[:, 0] = np.arange(self.n_nodes)
@@ -131,7 +131,7 @@ class Tree(Multivariate):
                     left_parent, right_parent = edge.parents
                     left_u, right_u = Edge.get_conditional_uni(left_parent, right_parent)
 
-                tau[i, j], pvalue = scipy.stats.kendalltau(left_u, right_u)
+                tau[i, j], _pvalue = scipy.stats.kendalltau(left_u, right_u)
 
         return tau
 
@@ -212,8 +212,7 @@ class Tree(Multivariate):
         """Produce printable representation of the class."""
         template = 'L:{} R:{} D:{} Copula:{} Theta:{}'
         return '\n'.join([
-            template.format(edge.L, edge.R, edge.D, edge.name, edge.theta)
-            for edge in self.edges
+            template.format(edge.L, edge.R, edge.D, edge.name, edge.theta) for edge in self.edges
         ])
 
     def _serialize_previous_tree(self):
@@ -237,11 +236,7 @@ class Tree(Multivariate):
                 Parameters of this Tree.
         """
         fitted = self.fitted
-        result = {
-            'tree_type': self.tree_type,
-            'type': get_qualified_name(self),
-            'fitted': fitted
-        }
+        result = {'tree_type': self.tree_type, 'type': get_qualified_name(self), 'fitted': fitted}
 
         if not fitted:
             return result
@@ -451,7 +446,7 @@ def get_tree(tree_type):
             Instance of a Tree of the specified type.
     """
     if not isinstance(tree_type, TreeTypes):
-        if (isinstance(tree_type, str) and tree_type.upper() in TreeTypes.__members__):
+        if isinstance(tree_type, str) and tree_type.upper() in TreeTypes.__members__:
             tree_type = TreeTypes[tree_type.upper()]
         else:
             raise ValueError(f'Invalid tree type {tree_type}')
@@ -657,7 +652,7 @@ class Edge(object):
             'theta': self.theta,
             'tau': self.tau,
             'U': U,
-            'likelihood': self.likelihood
+            'likelihood': self.likelihood,
         }
 
     @classmethod
@@ -674,8 +669,11 @@ class Edge(object):
                 Instance of the edge defined on the parameters.
         """
         instance = cls(
-            edge_dict['index'], edge_dict['L'], edge_dict['R'],
-            edge_dict['name'], edge_dict['theta']
+            edge_dict['index'],
+            edge_dict['L'],
+            edge_dict['R'],
+            edge_dict['name'],
+            edge_dict['theta'],
         )
         instance.U = np.array(edge_dict['U'])
         parents = edge_dict['parents']

copulas/multivariate/vine.py

@@ -8,8 +8,13 @@ import numpy as np
 import pandas as pd
 
 from copulas import (
-    EPSILON, check_valid_values, get_qualified_name, random_state, store_args,
-    validate_random_state)
+    EPSILON,
+    check_valid_values,
+    get_qualified_name,
+    random_state,
+    store_args,
+    validate_random_state,
+)
 from copulas.bivariate.base import Bivariate, CopulaTypes
 from copulas.multivariate.base import Multivariate
 from copulas.multivariate.tree import Tree, get_tree
@@ -103,7 +108,7 @@ class VineCopula(Multivariate):
         result = {
             'type': get_qualified_name(self),
             'vine_type': self.vine_type,
-            'fitted': self.fitted
+            'fitted': self.fitted,
         }
 
         if not self.fitted:
@@ -118,7 +123,7 @@ class VineCopula(Multivariate):
             'tau_mat': self.tau_mat.tolist(),
             'u_matrix': self.u_matrix.tolist(),
             'unis': [distribution.to_dict() for distribution in self.unis],
-            'columns': self.columns
+            'columns': self.columns,
         })
         return result
 
@@ -293,8 +298,9 @@ class VineCopula(Multivariate):
                     # get index of edge to retrieve
                     for edge in current_tree:
                         if i == 0:
-                            if (edge.L == current and edge.R == visited[0]) or\
-                               (edge.R == current and edge.L == visited[0]):
+                            if (edge.L == current and edge.R == visited[0]) or (
+                                edge.R == current and edge.L == visited[0]
+                            ):
                                 current_ind = edge.index
                                 break
                         else:

copulas/optimize/__init__.py

@@ -127,7 +127,7 @@ def chandrupatla(f, xmin, xmax, eps_m=None, eps_a=None, maxiter=50):
         # to determine which method we should use next
         xi = (a - b) / (c - b)
         phi = (fa - fb) / (fc - fb)
-        iqi = np.logical_and(phi**2 < xi, (1 - phi)**2 < 1 - xi)
+        iqi = np.logical_and(phi**2 < xi, (1 - phi) ** 2 < 1 - xi)
 
         if not shape:
             # scalar case
@@ -143,8 +143,9 @@ def chandrupatla(f, xmin, xmax, eps_m=None, eps_a=None, maxiter=50):
             # array case
             t = np.full(shape, 0.5)
             a2, b2, c2, fa2, fb2, fc2 = a[iqi], b[iqi], c[iqi], fa[iqi], fb[iqi], fc[iqi]
-            t[iqi] = fa2 / (fb2 - fa2) * fc2 / (fb2 - fc2) + (c2 - a2) / \
-                (b2 - a2) * fa2 / (fc2 - fa2) * fb2 / (fc2 - fb2)
+            t[iqi] = fa2 / (fb2 - fa2) * fc2 / (fb2 - fc2) + (c2 - a2) / (b2 - a2) * fa2 / (
+                fc2 - fa2
+            ) * fb2 / (fc2 - fb2)
 
         # limit to the range (tlim, 1-tlim)
         t = np.minimum(1 - tlim, np.maximum(tlim, t))

copulas/univariate/__init__.py

@@ -21,5 +21,5 @@ __all__ = (
     'ParametricType',
     'BoundedType',
     'UniformUnivariate',
-    'LogLaplace'
+    'LogLaplace',
 )

copulas/univariate/base.py

@@ -7,8 +7,13 @@ from enum import Enum
 import numpy as np
 
 from copulas import (
-    NotFittedError, get_instance, get_qualified_name, random_state, store_args,
-    validate_random_state)
+    NotFittedError,
+    get_instance,
+    get_qualified_name,
+    random_state,
+    store_args,
+    validate_random_state,
+)
 from copulas.univariate.selection import select_univariate
 
 
@@ -84,8 +89,14 @@ class Univariate(object):
         return candidates
 
     @store_args
-    def __init__(self, candidates=None, parametric=None, bounded=None, random_state=None,
-                 selection_sample_size=None):
+    def __init__(
+        self,
+        candidates=None,
+        parametric=None,
+        bounded=None,
+        random_state=None,
+        selection_sample_size=None,
+    ):
         self.candidates = candidates or self._select_candidates(parametric, bounded)
         self.random_state = validate_random_state(random_state)
         self.selection_sample_size = selection_sample_size

copulas/univariate/beta.py

@@ -28,12 +28,7 @@ class BetaUnivariate(ScipyModel):
         loc = np.min(X)
         scale = np.max(X) - loc
         a, b, loc, scale = beta.fit(X, loc=loc, scale=scale)
-        self._params = {
-            'loc': loc,
-            'scale': scale,
-            'a': a,
-            'b': b
-        }
+        self._params = {'loc': loc, 'scale': scale, 'a': a, 'b': b}
 
     def _is_constant(self):
         return self._params['scale'] == 0

copulas/univariate/gaussian.py

@@ -15,16 +15,10 @@ class GaussianUnivariate(ScipyModel):
     MODEL_CLASS = norm
 
     def _fit_constant(self, X):
-        self._params = {
-            'loc': np.unique(X)[0],
-            'scale': 0
-        }
+        self._params = {'loc': np.unique(X)[0], 'scale': 0}
 
     def _fit(self, X):
-        self._params = {
-            'loc': np.mean(X),
-            'scale': np.std(X)
-        }
+        self._params = {'loc': np.mean(X), 'scale': np.std(X)}
 
     def _is_constant(self):
         return self._params['scale'] == 0

copulas/univariate/gaussian_kde.py

@@ -129,7 +129,7 @@ class GaussianKDE(ScipyModel):
         self.check_fit()
 
         if len(U.shape) > 1:
-            raise ValueError(f'Expected 1d array, got {(U, )}.')
+            raise ValueError(f'Expected 1d array, got {(U,)}.')
 
         if np.any(U > 1.0) or np.any(U < 0.0):
             raise ValueError('Expected values in range [0.0, 1.0].')
@@ -165,11 +165,10 @@ class GaussianKDE(ScipyModel):
 
     def _fit(self, X):
         if self._sample_size:
-            X = gaussian_kde(X, bw_method=self.bw_method,
-                             weights=self.weights).resample(self._sample_size)
-        self._params = {
-            'dataset': X.tolist()
-        }
+            X = gaussian_kde(X, bw_method=self.bw_method, weights=self.weights).resample(
+                self._sample_size
+            )
+        self._params = {'dataset': X.tolist()}
         self._model = self._get_model()
 
     def _is_constant(self):

copulas/univariate/student_t.py

@@ -22,11 +22,7 @@ class StudentTUnivariate(ScipyModel):
 
     def _fit(self, X):
         dataframe, loc, scale = t.fit(X)
-        self._params = {
-            'df': dataframe,
-            'loc': loc,
-            'scale': scale
-        }
+        self._params = {'df': dataframe, 'loc': loc, 'scale': scale}
 
     def _is_constant(self):
         return self._params['scale'] == 0

copulas/univariate/truncated_gaussian.py

@@ -28,12 +28,7 @@ class TruncatedGaussian(ScipyModel):
 
     def _fit_constant(self, X):
         constant = np.unique(X)[0]
-        self._params = {
-            'a': constant,
-            'b': constant,
-            'loc': constant,
-            'scale': 0.0
-        }
+        self._params = {'a': constant, 'b': constant, 'loc': constant, 'scale': 0.0}
 
     def _fit(self, X):
         if self.min is None:
@@ -51,21 +46,18 @@ class TruncatedGaussian(ScipyModel):
         initial_params = X.mean(), X.std()
         with warnings.catch_warnings():
             warnings.simplefilter('ignore', category=RuntimeWarning)
-            optimal = fmin_slsqp(nnlf, initial_params, iprint=False, bounds=[
-                (self.min, self.max),
-                (0.0, (self.max - self.min)**2)
-            ])
+            optimal = fmin_slsqp(
+                nnlf,
+                initial_params,
+                iprint=False,
+                bounds=[(self.min, self.max), (0.0, (self.max - self.min) ** 2)],
+            )
 
         loc, scale = optimal
         a = (self.min - loc) / scale
         b = (self.max - loc) / scale
 
-        self._params = {
-            'a': a,
-            'b': b,
-            'loc': loc,
-            'scale': scale
-        }
+        self._params = {'a': a, 'b': b, 'loc': loc, 'scale': scale}
 
     def _is_constant(self):
         return self._params['a'] == self._params['b']

copulas/univariate/uniform.py

@@ -15,16 +15,10 @@ class UniformUnivariate(ScipyModel):
     MODEL_CLASS = uniform
 
     def _fit_constant(self, X):
-        self._params = {
-            'loc': np.min(X),
-            'scale': np.max(X) - np.min(X)
-        }
+        self._params = {'loc': np.min(X), 'scale': np.max(X) - np.min(X)}
 
     def _fit(self, X):
-        self._params = {
-            'loc': np.min(X),
-            'scale': np.max(X) - np.min(X)
-        }
+        self._params = {'loc': np.min(X), 'scale': np.max(X) - np.min(X)}
 
     def _is_constant(self):
         return self._params['scale'] == 0

copulas/visualization.py

@@ -31,11 +31,7 @@ def _generate_1d_plot(data, title, labels, colors):
         plotly.graph_objects._figure.Figure
     """
     fig = ff.create_distplot(
-        hist_data=data,
-        group_labels=labels,
-        show_hist=False,
-        show_rug=False,
-        colors=colors
+        hist_data=data, group_labels=labels, show_hist=False, show_rug=False, colors=colors
     )
 
     for i, name in enumerate(labels):
@@ -52,7 +48,7 @@ def _generate_1d_plot(data, title, labels, colors):
         font={'size': PlotConfig.FONT_SIZE},
         showlegend=True if labels[0] else False,
         xaxis_title='value',
-        yaxis_title='frequency'
+        yaxis_title='frequency',
     )
 
     return fig
@@ -80,10 +76,7 @@ def dist_1d(data, title=None, label=None):
             title += f" for column '{data.name}'"
 
     return _generate_1d_plot(
-        data=[data],
-        title=title,
-        labels=[label],
-        colors=[PlotConfig.DATACEBO_DARK]
+        data=[data], title=title, labels=[label], colors=[PlotConfig.DATACEBO_DARK]
     )
 
 
@@ -112,7 +105,7 @@ def compare_1d(real, synth, title=None):
         data=[real, synth],
         title=title,
         labels=['Real', 'Synthetic'],
-        colors=[PlotConfig.DATACEBO_DARK, PlotConfig.DATACEBO_GREEN]
+        colors=[PlotConfig.DATACEBO_DARK, PlotConfig.DATACEBO_GREEN],
     )
 
 
@@ -148,7 +141,7 @@ def _generate_scatter_2d_plot(data, columns, color_discrete_map, title):
         y=columns[1],
         color='Data',
         color_discrete_map=color_discrete_map,
-        symbol='Data'
+        symbol='Data',
     )
 
     fig.update_layout(
@@ -189,7 +182,7 @@ def scatter_2d(data, columns=None, title=None):
         data=data,
         columns=columns,
         color_discrete_map={'Real': PlotConfig.DATACEBO_DARK},
-        title=title
+        title=title,
     )
 
 
@@ -226,9 +219,9 @@ def compare_2d(real, synth, columns=None, title=None):
         columns=columns,
         color_discrete_map={
             'Real': PlotConfig.DATACEBO_DARK,
-            'Synthetic': PlotConfig.DATACEBO_GREEN
+            'Synthetic': PlotConfig.DATACEBO_GREEN,
         },
-        title=title
+        title=title,
     )
 
 
@@ -302,14 +295,15 @@ def scatter_3d(data, columns=None, title=None):
         if columns:
             title += f" for columns '{columns[0]}', '{columns[1]}' and '{columns[2]}'"
         elif isinstance(data, pd.DataFrame):
-            title += \
+            title += (
                 f" for columns '{data.columns[0]}', '{data.columns[1]}' and '{data.columns[2]}'"
+            )
 
     return _generate_scatter_3d_plot(
         data=data,
         columns=columns,
         color_discrete_map={'Real': PlotConfig.DATACEBO_DARK},
-        title=title
+        title=title,
     )
 
 
@@ -336,15 +330,16 @@ def compare_3d(real, synth, columns=None, title=None):
         if columns:
             title += f" for columns '{columns[0]}', '{columns[1]}' and '{columns[2]}'"
         elif isinstance(data, pd.DataFrame):
-            title += \
+            title += (
                 f" for columns '{data.columns[0]}', '{data.columns[1]}' and '{data.columns[2]}'"
+            )
 
     return _generate_scatter_3d_plot(
         data=data,
         columns=columns,
         color_discrete_map={
             'Real': PlotConfig.DATACEBO_DARK,
-            'Synthetic': PlotConfig.DATACEBO_GREEN
+            'Synthetic': PlotConfig.DATACEBO_GREEN,
         },
-        title=title
+        title=title,
     )

{copulas-0.11.0.dev0.dist-info → copulas-0.11.1.dev0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: copulas
-Version: 0.11.0.dev0
+Version: 0.11.1.dev0
 Summary: Create tabular synthetic data using copulas-based modeling.
 Author-email: "DataCebo, Inc." <info@sdv.dev>
 License: BSL-1.1
@@ -24,79 +24,56 @@ Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
 Requires-Python: <3.13,>=3.8
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: plotly >=5.10.0
-Requires-Dist: numpy >=1.20.0 ; python_version < "3.10"
-Requires-Dist: pandas >=1.1.3 ; python_version < "3.10"
-Requires-Dist: scipy >=1.5.4 ; python_version < "3.10"
-Requires-Dist: pandas >=1.3.4 ; python_version >= "3.10" and python_version < "3.11"
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 <p style="text-align:center">
     <i>This repository is part of <a href="https://sdv.dev">The Synthetic Data Vault Project</a>, a project from <a href="https://datacebo.com">DataCebo</a>.</i>

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