cool-seq-tool 0.4.0.dev1__py3-none-any.whl → 0.4.0.dev2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: cool_seq_tool
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- Version: 0.4.0.dev1
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+ Version: 0.4.0.dev2
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  Summary: Common Operation on Lots of Sequences Tool
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  Author: Kori Kuzma, James Stevenson, Katie Stahl, Alex Wagner
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  License: MIT License
@@ -49,7 +49,7 @@ License-File: LICENSE
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  Requires-Dist: asyncpg
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  Requires-Dist: aiofiles
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  Requires-Dist: boto3
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- Requires-Dist: pyliftover
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+ Requires-Dist: agct >=0.1.0-dev1
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  Requires-Dist: polars
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  Requires-Dist: hgvs
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  Requires-Dist: biocommons.seqrepo
@@ -62,7 +62,7 @@ Requires-Dist: pre-commit ; extra == 'dev'
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  Requires-Dist: ipython ; extra == 'dev'
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  Requires-Dist: ipykernel ; extra == 'dev'
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  Requires-Dist: psycopg2-binary ; extra == 'dev'
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- Requires-Dist: ruff ; extra == 'dev'
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+ Requires-Dist: ruff >=0.1.14 ; extra == 'dev'
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  Provides-Extra: docs
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  Requires-Dist: sphinx ==6.1.3 ; extra == 'docs'
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  Requires-Dist: sphinx-autodoc-typehints ==1.22.0 ; extra == 'docs'
@@ -70,6 +70,7 @@ Requires-Dist: sphinx-autobuild ==2021.3.14 ; extra == 'docs'
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  Requires-Dist: sphinx-copybutton ==0.5.2 ; extra == 'docs'
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  Requires-Dist: sphinxext-opengraph ==0.8.2 ; extra == 'docs'
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  Requires-Dist: furo ==2023.3.27 ; extra == 'docs'
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+ Requires-Dist: sphinx-github-changelog ==1.2.1 ; extra == 'docs'
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  Provides-Extra: tests
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  Requires-Dist: pytest ; extra == 'tests'
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  Requires-Dist: pytest-cov ; extra == 'tests'
@@ -80,7 +81,7 @@ Requires-Dist: mock ; extra == 'tests'
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  CoolSeqTool
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  </h1>
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- **[Documentation](https://coolseqtool.readthedocs.io/en/latest/)** · [Installation](https://coolseqtool.readthedocs.io/en/latest/install.html) · [Usage](https://coolseqtool.readthedocs.io/en/latest/usage.html) · [API reference](https://coolseqtool.readthedocs.io/en/latest/reference/index.html)
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+ **[Documentation](https://coolseqtool.readthedocs.io/latest/)** · [Installation](https://coolseqtool.readthedocs.io/latest/install.html) · [Usage](https://coolseqtool.readthedocs.io/latest/usage.html) · [API reference](https://coolseqtool.readthedocs.io/latest/reference/index.html)
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  ## Overview
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@@ -102,7 +103,7 @@ CoolSeqTool is available on [PyPI](https://pypi.org/project/cool-seq-tool)
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  python3 -m pip install cool-seq-tool
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  ```
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- See the [installation instructions](https://coolseqtool.readthedocs.io/en/latest/install.html) in the documentation for a description of dependency setup requirements.
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+ See the [installation instructions](https://coolseqtool.readthedocs.io/latest/install.html) in the documentation for a description of dependency setup requirements.
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  ---
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@@ -127,4 +128,4 @@ All CoolSeqTool resources can be initialized by way of a top-level class instanc
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  ## Feedback and contributing
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- We welcome bug reports, feature requests, and code contributions from users and interested collaborators. The [documentation](https://coolseqtool.readthedocs.io/en/latest/contributing.html) contains guidance for submitting feedback and contributing new code.
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+ We welcome bug reports, feature requests, and code contributions from users and interested collaborators. The [documentation](https://coolseqtool.readthedocs.io/latest/contributing.html) contains guidance for submitting feedback and contributing new code.
@@ -0,0 +1,29 @@
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+ cool_seq_tool/__init__.py,sha256=eBycAZIAJBCf51xQLQYHzvUep1i21LMrzBdRLqfe-Fc,352
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+ cool_seq_tool/api.py,sha256=3Pc0j0pHMZ_3skTkjDlQpcu_MM6kyNPmBrwm_LrH-rw,1234
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+ cool_seq_tool/app.py,sha256=3r2hlajW6xjf3u_Uf9WlqMfBEK-LnB74sG2UpJlj2bY,3757
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+ cool_seq_tool/paths.py,sha256=7EA21Vmf9hvct0z_V4oK0WTWOA2FKY2Tavh4nAUXunk,889
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+ cool_seq_tool/schemas.py,sha256=Uw5OkC0dPM_RC8ZHNn1wLZBZK_kWAkkQQRrh-zOsJjg,15922
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+ cool_seq_tool/utils.py,sha256=26y_25V029l-ra3We3z-KQFfgRlcvfl2dQ8XJ1t6yfM,1625
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+ cool_seq_tool/version.py,sha256=cuIT6sKXUqxwO7uw5ifUO0f7jv19ApxBFZMLy2jwNgo,57
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+ cool_seq_tool/data/__init__.py,sha256=pOdws59_iPOP0V4xqx55PdxCUxHSA5N_Eo5L0oZsafs,63
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+ cool_seq_tool/handlers/__init__.py,sha256=xDQ84N4ImrUBKwGmrg64yGUMh0ArW-DwjJuTkKrIJL4,77
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+ cool_seq_tool/mappers/__init__.py,sha256=5aE6IRTG8SwOofFR19QHmK-1n2PaKwEPzFGNE0_HS3s,261
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+ cool_seq_tool/mappers/alignment.py,sha256=htGb9rJab8dAKcMR62NF0uGc5l4KROrMcMAKfSQhva0,9620
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+ cool_seq_tool/mappers/exon_genomic_coords.py,sha256=vuU1vtEzgwGqGFywDOEia8I-46qsAhRI1fM_PkbpBnk,30809
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+ cool_seq_tool/mappers/mane_transcript.py,sha256=XB51pcR5TCtteXS525NgP2S7aRU1gnBtB2ZrSltxM1A,49364
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+ cool_seq_tool/routers/__init__.py,sha256=x00Dq0LzqYoBPbipmyexLbAMUb7Udx8DozfwT-mJo1E,436
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+ cool_seq_tool/routers/default.py,sha256=nMDcAAdo-QZugs6k43HnYJCzhorg9nFt0TsdXTckVZU,3927
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+ cool_seq_tool/sources/__init__.py,sha256=lERBM8cOqlJhYqz_DwOMV5FsWvMvQMbU1KQBxx_cz6M,303
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+ cool_seq_tool/sources/mane_transcript_mappings.py,sha256=Oyq7cdUJ2j0isROCkHW-rgtU7LtyFon3DJz6hrEl5cU,3750
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+ cool_seq_tool/sources/transcript_mappings.py,sha256=_CV71tyge24rr7Kb_rJJQTr9uG1lSU_O-HcC9hIc5OQ,9731
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+ cool_seq_tool/sources/uta_database.py,sha256=nlvEIsdZxY7z4-PfTWVbpt5O4fMNgHWHmFxx3lL-mgM,43578
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+ cool_seq_tool-0.4.0.dev2.dist-info/LICENSE,sha256=1jbnPcw_qmlDZyD_E_ebjWwjIvBgOD-1biodvBtSl1U,1072
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+ cool_seq_tool-0.4.0.dev2.dist-info/METADATA,sha256=adcWEq-_TLdFRhIfnDmVPyu4i_xMM9uXA9qWN5mZNq0,5721
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+ cool_seq_tool-0.4.0.dev2.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
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+ cool_seq_tool-0.4.0.dev2.dist-info/top_level.txt,sha256=cGuxdN6p3y16jQf6hCwWhE4OptwUeZPm_PNJlPb3b0k,14
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+ cool_seq_tool-0.4.0.dev2.dist-info/RECORD,,
@@ -1,29 +0,0 @@
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- cool_seq_tool/__init__.py,sha256=eBycAZIAJBCf51xQLQYHzvUep1i21LMrzBdRLqfe-Fc,352
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- cool_seq_tool/api.py,sha256=3Pc0j0pHMZ_3skTkjDlQpcu_MM6kyNPmBrwm_LrH-rw,1234
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- cool_seq_tool/app.py,sha256=3r2hlajW6xjf3u_Uf9WlqMfBEK-LnB74sG2UpJlj2bY,3757
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- cool_seq_tool/data/__init__.py,sha256=EAk0f_xeq1JAkRosLMiWWhEXku6lYfMZ63HR_6QxSqs,77
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- cool_seq_tool/data/transcript_mapping.tsv,sha256=AO3luYQAbFiCoRgiiPXotakb5pAwx1jDCeXpvGdIuac,24138769
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- cool_seq_tool/handlers/__init__.py,sha256=xDQ84N4ImrUBKwGmrg64yGUMh0ArW-DwjJuTkKrIJL4,77
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- cool_seq_tool/mappers/alignment.py,sha256=htGb9rJab8dAKcMR62NF0uGc5l4KROrMcMAKfSQhva0,9620
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- cool_seq_tool/mappers/mane_transcript.py,sha256=h7J4ip9HPhVvADqvWp5ZGT9257xymVkSJ3vj3YRzIws,49359
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- cool_seq_tool/routers/__init__.py,sha256=x00Dq0LzqYoBPbipmyexLbAMUb7Udx8DozfwT-mJo1E,436
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- cool_seq_tool/routers/default.py,sha256=F9NDKv7oiEz7Yk9BKAqhJxTBELpYLDhOqB8keRVtYkU,3937
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- cool_seq_tool/sources/uta_database.py,sha256=DYAH0oxxURyRbeRLlD3AQOi4BiTIlZbzsI05Lt6x68Y,44007
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- cool_seq_tool-0.4.0.dev1.dist-info/LICENSE,sha256=1jbnPcw_qmlDZyD_E_ebjWwjIvBgOD-1biodvBtSl1U,1072
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- cool_seq_tool-0.4.0.dev1.dist-info/top_level.txt,sha256=cGuxdN6p3y16jQf6hCwWhE4OptwUeZPm_PNJlPb3b0k,14
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- cool_seq_tool-0.4.0.dev1.dist-info/RECORD,,