commonmeta-schema 1.0rc1__py3-none-any.whl

commonmeta_schema/__init__.py

@@ -0,0 +1,15 @@
+"""Access helpers for Commonmeta schemas and fixtures."""
+
+from .resources import (
+    available_schema_versions,
+    fixtures_path,
+    package_root,
+    schema_path,
+)
+
+__all__ = [
+    "available_schema_versions",
+    "fixtures_path",
+    "package_root",
+    "schema_path",
+]

commonmeta_schema/fixtures/bibtex/crossref.bib

@@ -0,0 +1,14 @@
+@article{Sankar_2014,
+  doi = {10.7554/elife.01567},
+  url = {http://elifesciences.org/lookup/doi/10.7554/eLife.01567},
+  year = 2014,
+  month = {feb},
+  publisher = {{eLife} Sciences Organisation, Ltd.},
+  volume = {3},
+  author = {Martial Sankar and Kaisa Nieminen and Laura Ragni and Ioannis Xenarios and Christian S Hardtke},
+  title = {Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth},
+  abstract = {Among various advantages, their small size makes model organisms preferred subjects of investigation. Yet, even in model systems detailed analysis of numerous developmental processes at cellular level is severely hampered by their scale.},
+  journal = {eLife},
+  issn = {2050-084X},
+  copyright = {http://creativecommons.org/licenses/by/3.0/}
+ }

commonmeta_schema/fixtures/bibtex/journal_article.bib

@@ -0,0 +1,14 @@
+@article{10.5555/12345678,
+author = {Lovelace, Ada},
+copyright = {https://creativecommons.org/licenses/by/4.0/legalcode},
+date = {2024-03-15},
+doi = {10.5555/12345678},
+issn = {1234-5678},
+issue = {3},
+journal = {Journal of Examples},
+language = {English},
+pages = {100--110},
+title = {A Study of Things},
+url = {https://example.org/article/1},
+volume = {12},
+}

commonmeta_schema/fixtures/bibtex/pure.bib

@@ -0,0 +1,14 @@
+@phdthesis{dbbe66e459a446a0b6fddf42d3401ccb,
+  title     = "A multiscale analysis of the urban heat island effect: from city averaged temperatures to the energy demand of individual buildings",
+  abstract  = "Designing the climates of cities",
+  author    = "Y. Toparlar",
+  note      = "Proefschrift",
+  year      = "2018",
+  month     = "4",
+  day       = "25",
+  language  = "English",
+  isbn      = "978-90-386-4503-2",
+  series    = "Bouwstenen",
+  publisher = "Technische Universiteit Eindhoven",
+  school    = "Department of Built Environment",
+}

commonmeta_schema/fixtures/bibtex_commonmeta/crossref.json

@@ -0,0 +1,82 @@
+{
+    "id": "https://doi.org/10.7554/elife.01567",
+    "type": "JournalArticle",
+    "container": {
+        "identifier": "2050-084X",
+        "identifier_type": "ISSN",
+        "type": "Journal",
+        "title": "eLife",
+        "volume": "3"
+    },
+    "contributors": [
+        {
+            "type": "Person",
+            "person": {
+                "given_name": "Martial",
+                "family_name": "Sankar"
+            },
+            "roles": [
+                "Author"
+            ]
+        },
+        {
+            "type": "Person",
+            "person": {
+                "given_name": "Kaisa",
+                "family_name": "Nieminen"
+            },
+            "roles": [
+                "Author"
+            ]
+        },
+        {
+            "type": "Person",
+            "person": {
+                "given_name": "Laura",
+                "family_name": "Ragni"
+            },
+            "roles": [
+                "Author"
+            ]
+        },
+        {
+            "type": "Person",
+            "person": {
+                "given_name": "Ioannis",
+                "family_name": "Xenarios"
+            },
+            "roles": [
+                "Author"
+            ]
+        },
+        {
+            "type": "Person",
+            "person": {
+                "given_name": "Christian S",
+                "family_name": "Hardtke"
+            },
+            "roles": [
+                "Author"
+            ]
+        }
+    ],
+    "date_published": "2014-02",
+    "description": "Among various advantages, their small size makes model organisms preferred subjects of investigation. Yet, even in model systems detailed analysis of numerous developmental processes at cellular level is severely hampered by their scale.",
+    "identifiers": [
+        {
+            "identifier": "https://doi.org/10.7554/elife.01567",
+            "identifier_type": "DOI"
+        }
+    ],
+    "license": {
+        "id": "CC-BY-3.0",
+        "title": "Creative Commons Attribution 3.0 Unported",
+        "url": "http://creativecommons.org/licenses/by/3.0/"
+    },
+    "publisher": {
+        "name": "eLife Sciences Organisation, Ltd."
+    },
+    "schema_version": "https://commonmeta.org/commonmeta_v1.0.json",
+    "title": "Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth",
+    "url": "http://elifesciences.org/lookup/doi/10.7554/eLife.01567"
+}

commonmeta_schema/fixtures/bibtex_commonmeta/journal_article.json

@@ -0,0 +1,42 @@
+{
+  "id": "https://doi.org/10.5555/12345678",
+  "type": "JournalArticle",
+  "title": "A Study of Things",
+  "container": {
+    "identifier": "1234-5678",
+    "identifier_type": "ISSN",
+    "type": "Journal",
+    "title": "Journal of Examples",
+    "first_page": "100",
+    "last_page": "110",
+    "volume": "12",
+    "issue": "3"
+  },
+  "contributors": [
+    {
+      "type": "Person",
+      "person": {
+        "given_name": "Ada",
+        "family_name": "Lovelace"
+      },
+      "roles": [
+        "Author"
+      ]
+    }
+  ],
+  "date_published": "2024-03-15",
+  "identifiers": [
+    {
+      "identifier": "https://doi.org/10.5555/12345678",
+      "identifier_type": "DOI"
+    }
+  ],
+  "language": "en",
+  "license": {
+    "id": "CC-BY-4.0",
+    "title": "Creative Commons Attribution 4.0 International",
+    "url": "https://creativecommons.org/licenses/by/4.0/legalcode"
+  },
+  "schema_version": "https://commonmeta.org/commonmeta_v1.0.json",
+  "url": "https://example.org/article/1"
+}

commonmeta_schema/fixtures/bibtex_out/journal_article.bib

@@ -0,0 +1,16 @@
+@article{10.5555/12345678,
+    abstract = {An abstract about things.},
+    author = {Lovelace, Ada},
+    copyright = {https://creativecommons.org/licenses/by/4.0/legalcode},
+    doi = {{10.5555/12345678}},
+    issn = {1234-5678},
+    issue = {3},
+    journal = {Journal of Examples},
+    language = {English},
+    month = {mar},
+    pages = {100--110},
+    title = {A Study of Things},
+    url = {{https://example.org/article/1}},
+    volume = {12},
+    year = {2024},
+}

commonmeta_schema/fixtures/cff/CITATION.cff

@@ -0,0 +1,83 @@
+# This CITATION.cff file was created by ruby-cff (v 0.9.0).
+# Gem: https://rubygems.org/gems/cff
+# CFF: https://citation-file-format.github.io/
+
+cff-version: 1.2.0
+message: If you use ruby-cff in your work, please cite it using the following metadata
+title: Ruby CFF Library
+abstract: This library provides a Ruby interface to manipulate Citation File Format files
+authors:
+- family-names: Haines
+  given-names: Robert
+  orcid: https://orcid.org/0000-0002-9538-7919
+  affiliation: The University of Manchester, UK
+- name: The Ruby Citation File Format Developers
+keywords:
+- ruby
+- credit
+- software citation
+- research software
+- software sustainability
+- metadata
+- citation file format
+- CFF
+version: 0.9.0
+doi: 10.5281/zenodo.1184077
+date-released: 2021-08-18
+license: Apache-2.0
+repository-artifact: https://rubygems.org/gems/cff
+repository-code: https://github.com/citation-file-format/ruby-cff
+references:
+- type: software
+  title: Citation File Format
+  authors:
+  - family-names: Druskat
+    given-names: Stephan
+    orcid: https://orcid.org/0000-0003-4925-7248
+  - family-names: Spaaks
+    given-names: Jurriaan H.
+    orcid: https://orcid.org/0000-0002-7064-4069
+  - family-names: Chue Hong
+    given-names: Neil
+    orcid: https://orcid.org/0000-0002-8876-7606
+  - family-names: Haines
+    given-names: Robert
+    orcid: https://orcid.org/0000-0002-9538-7919
+  - family-names: Baker
+    given-names: James
+    orcid: https://orcid.org/0000-0002-2682-6922
+  - family-names: Bliven
+    given-names: Spencer
+    orcid: https://orcid.org/0000-0002-1200-1698
+    email: spencer.bliven@gmail.com
+  - family-names: Willighagen
+    given-names: Egon
+    orcid: https://orcid.org/0000-0001-7542-0286
+  - family-names: Pérez-Suárez
+    given-names: David
+    orcid: https://orcid.org/0000-0003-0784-6909
+    website: https://dpshelio.github.io
+  - family-names: Konovalov
+    given-names: Alexander
+    orcid: https://orcid.org/0000-0001-5299-3292
+  identifiers:
+  - type: doi
+    value: 10.5281/zenodo.1003149
+    description: The concept DOI for the collection containing all versions of the Citation File Format.
+  - type: doi
+    value: 10.5281/zenodo.5171937
+    description: The versioned DOI for the version 1.2.0 of the Citation File Format.
+  keywords:
+  - citation file format
+  - CFF
+  - citation files
+  - software citation
+  - file format
+  - YAML
+  - software sustainability
+  - research software
+  - credit
+  abstract: CITATION.cff files are plain text files with human- and machine-readable citation information for software. Code developers can include them in their repositories to let others know how to correctly cite their software. This is the specification for the Citation File Format.
+  date-released: 2021-08-09
+  license: CC-BY-4.0
+  version: 1.2.0

commonmeta_schema/fixtures/cff_commonmeta/CITATION.json

@@ -0,0 +1,76 @@
+{
+    "id": "https://doi.org/10.5281/zenodo.1184077",
+    "type": "Software",
+    "contributors": [
+        {
+            "type": "Person",
+            "person": {
+                "id": "https://orcid.org/0000-0002-9538-7919",
+                "given_name": "Robert",
+                "family_name": "Haines",
+                "affiliations": [
+                    {
+                        "name": "The University of Manchester, UK"
+                    }
+                ]
+            },
+            "roles": [
+                "Author"
+            ]
+        },
+        {
+            "type": "Organization",
+            "organization": {
+                "name": "The Ruby Citation File Format Developers"
+            },
+            "roles": [
+                "Author"
+            ]
+        }
+    ],
+    "date_published": "2021-08-18",
+    "description": "This library provides a Ruby interface to manipulate Citation File Format files",
+    "license": {
+        "id": "Apache-2.0",
+        "title": "Apache License 2.0",
+        "url": "https://www.apache.org/licenses/LICENSE-2.0"
+    },
+    "publisher": {
+        "name": "GitHub"
+    },
+    "references": [
+        {
+            "id": "https://doi.org/10.5281/zenodo.1003149"
+        }
+    ],
+    "schema_version": "https://commonmeta.org/commonmeta_v1.0.json",
+    "subjects": [
+        {
+            "subject": "ruby"
+        },
+        {
+            "subject": "credit"
+        },
+        {
+            "subject": "software citation"
+        },
+        {
+            "subject": "research software"
+        },
+        {
+            "subject": "software sustainability"
+        },
+        {
+            "subject": "metadata"
+        },
+        {
+            "subject": "citation file format"
+        },
+        {
+            "subject": "CFF"
+        }
+    ],
+    "title": "Ruby CFF Library",
+    "url": "https://github.com/citation-file-format/ruby-cff",
+    "version": "0.9.0"
+}

commonmeta_schema/fixtures/codemeta/codemeta.json

@@ -0,0 +1,86 @@
+{
+	"@context": "https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld",
+	"@type": "SoftwareSourceCode",
+	"agents": [{
+		"@id": "http://orcid.org/0000-0003-0077-4738",
+		"@type": "person",
+		"email": "jones@nceas.ucsb.edu",
+		"name": "Matt Jones",
+		"affiliation": "NCEAS",
+		"mustBeCited": true,
+		"isMaintainer": true,
+		"isRightsHolder": true,
+		"role": {
+			"namespace": "http://www.ngdc.noaa.gov/metadata/published/xsd/schema/resources/Codelist/gmxCodelists.xml#CI_RoleCode",
+			"roleCode": [
+				"originator",
+				"resourceProvider"
+			]
+		}
+	}, {
+		"@id": "http://orcid.org/0000-0002-2192-403X",
+		"@type": "person",
+		"email": "slaughter@nceas.ucsb.edu",
+		"name": "Peter Slaughter",
+		"affiliation": "NCEAS",
+		"mustBeCited": true,
+		"isMaintainer": false,
+		"isRightsHolder": false,
+		"role": {
+			"namespace": "http://www.ngdc.noaa.gov/metadata/published/xsd/schema/resources/Codelist/gmxCodelists.xml#CI_RoleCode",
+			"roleCode": "contributor"
+		}
+	}, {
+		"@type": "organization",
+		"email": "info@ucop.edu",
+		"name": "University of California, Santa Barbara",
+		"role": {
+			"namespace": "http://www.ngdc.noaa.gov/metadata/published/xsd/schema/resources/Codelist/gmxCodelists.xml#CI_RoleCode",
+			"roleCode": "copyrightHolder"
+		}
+	}],
+	"depends": {
+		"@type": "URL",
+		"@value": "https://github.com/ropensci/datapack"
+	},
+	"identifier": "http://dx.doi.org/10.5063/F1M61H5X",
+	"codeRepository": "https://github.com/DataONEorg/rdataone",
+	"controlledTem": "software",
+	"datePublished": "2016-05-27",
+	"dateModified": "2016-05-27",
+	"dateCreated": "2016-05-27",
+	"description": "Provides read and write access to data and metadata from the DataONE network of data repositories.Each DataONE repository implements a consistent repository application programming interface. Users call methods in R to access these remote repository functions, such as methods to query the metadata catalog, get access to metadata for particular data packages, and read the data objects from the data repository.Users can also insert and update data objects on repositories that support these methods.",
+	"downloadLink": "https://cran.r-project.org/src/contrib/dataone_2.0.0.tar.gz",
+	"funding": "National Science Foundation grant #012345678",
+	"isAutomatedBuild": false,
+	"issueTracker": "https://github.com/DataONEorg/rdataone/issues",
+	"licenseId": "Apache-2.0",
+	"publisher": "https://cran.r-project.org",
+	"tags": [
+		"data sharing",
+		"data repository",
+		"DataONE"
+	],
+	"title": "R Interface to the DataONE REST API",
+	"version": "2.0.0",
+	"uploadedBy": {
+		"@id": "http://orcid.org/0000-0003-0077-4738",
+		"@type": "person",
+		"email": "mbjones@nceas.ucsb.edu",
+		"name": "Matt Jones"
+	},
+	"programmingLanguage": {
+		"name": "R",
+		"version": "> 3.1.1",
+		"URL": "https://www.r-project.org"
+	},
+	"readme": "https://github.com/DataONEorg/rdataone/README.md",
+	"relatedPublications": "ISBN:0201703726",
+	"relationship": {
+		"relationshipType": "isPartOf",
+		"relatedIdentifier": "urn:uuid:F1A0A7AF-ECF3-4C7D-B675-7C6949963995",
+		"relatedIdentifierType": "UUID"
+	},
+	"softwarePaperCitationIdentifiers": "http://doi.org/0000/0000",
+	"zippedCode": "https://cran.r-project.org/src/contrib/dataone_2.0.0.tar.gz"
+}

commonmeta_schema/fixtures/commonmeta/blog_post_1.json

@@ -0,0 +1,44 @@
+{
+  "id": "https://doi.org/10.59350/abcde-fghij",
+  "type": "Preprint",
+  "additional_titles": [
+    {
+      "title": "An Introduction",
+      "type": "Subtitle"
+    }
+  ],
+  "content": "<p>Hello <strong>world</strong>.</p>",
+  "contributors": [
+    {
+      "type": "Person",
+      "person": {
+        "given_name": "Jane",
+        "family_name": "Doe"
+      },
+      "roles": [
+        "Author"
+      ]
+    }
+  ],
+  "date_published": "2025-02-10",
+  "description": "A short summary of the post.",
+  "language": "en",
+  "provider": "Crossref",
+  "publisher": {
+    "name": "Example Blog"
+  },
+  "relations": [
+    {
+      "id": "https://doi.org/10.5555/journal",
+      "type": "IsPartOf"
+    }
+  ],
+  "schema_version": "https://commonmeta.org/commonmeta_v1.0rc1.json",
+  "subjects": [
+    {
+      "subject": "Technology"
+    }
+  ],
+  "title": "Hello World",
+  "url": "https://blog.example.org/post"
+}

commonmeta_schema/fixtures/commonmeta/citeproc.json

@@ -0,0 +1,50 @@
+{
+  "id": "https://doi.org/10.5438/4k3m-nyvg",
+  "type": "BlogPost",
+  "container": {
+    "title": "DataCite Blog"
+  },
+  "contributors": [
+    {
+      "type": "Person",
+      "person": {
+        "given_name": "Martin",
+        "family_name": "Fenner"
+      },
+      "roles": [
+        "Author"
+      ]
+    }
+  ],
+  "date_published": "2016-12-20",
+  "description": "Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...",
+  "publisher": {
+    "name": "DataCite"
+  },
+  "schema_version": "https://commonmeta.org/commonmeta_v1.0rc1.json",
+  "subjects": [
+    {
+      "subject": "Phylogeny"
+    },
+    {
+      "subject": "Malaria"
+    },
+    {
+      "subject": "Parasites"
+    },
+    {
+      "subject": "Taxonomy"
+    },
+    {
+      "subject": "Mitochondrial genome"
+    },
+    {
+      "subject": "Africa"
+    },
+    {
+      "subject": "Plasmodium"
+    }
+  ],
+  "title": "Eating your own Dog Food",
+  "url": "https://blog.datacite.org/eating-your-own-dog-food"
+}

commonmeta_schema/fixtures/commonmeta/citeproc_no_author.json

@@ -0,0 +1,38 @@
+{
+  "id": "https://doi.org/10.5438/4k3m-nyvg",
+  "type": "BlogPost",
+  "container": {
+    "title": "DataCite Blog"
+  },
+  "date_published": "2016-12-20",
+  "description": "Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...",
+  "publisher": {
+    "name": "DataCite"
+  },
+  "schema_version": "https://commonmeta.org/commonmeta_v1.0rc1.json",
+  "subjects": [
+    {
+      "subject": "Phylogeny"
+    },
+    {
+      "subject": "Malaria"
+    },
+    {
+      "subject": "Parasites"
+    },
+    {
+      "subject": "Taxonomy"
+    },
+    {
+      "subject": "Mitochondrial genome"
+    },
+    {
+      "subject": "Africa"
+    },
+    {
+      "subject": "Plasmodium"
+    }
+  ],
+  "title": "Eating your own Dog Food",
+  "url": "https://blog.datacite.org/eating-your-own-dog-food"
+}

commonmeta_schema/fixtures/commonmeta/codemeta.json

@@ -0,0 +1,65 @@
+{
+  "id": "https://doi.org/10.5063/f1m61h5x",
+  "type": "Software",
+  "contributors": [
+    {
+      "type": "Person",
+      "person": {
+        "id": "https://orcid.org/0000-0003-0077-4738",
+        "given_name": "Matt",
+        "family_name": "Jones",
+        "affiliations": [
+          {
+            "name": "NCEAS"
+          }
+        ]
+      },
+      "roles": [
+        "Author"
+      ]
+    },
+    {
+      "type": "Person",
+      "person": {
+        "id": "https://orcid.org/0000-0002-2192-403X",
+        "given_name": "Peter",
+        "family_name": "Slaughter",
+        "affiliations": [
+          {
+            "name": "NCEAS"
+          }
+        ]
+      },
+      "roles": [
+        "Author"
+      ]
+    },
+    {
+      "type": "Organization",
+      "organization": {
+        "name": "University of California, Santa Barbara"
+      },
+      "roles": [
+        "Author"
+      ]
+    }
+  ],
+  "date_published": "2016-05-27",
+  "date_updated": "2016-05-27",
+  "dates": {
+    "created": "2016-05-27"
+  },
+  "description": "Provides read and write access to data and metadata from the DataONE network of data repositories.Each DataONE repository implements a consistent repository application programming interface. Users call methods in R to access these remote repository functions, such as methods to query the metadata catalog, get access to metadata for particular data packages, and read the data objects from the data repository.Users can also insert and update data objects on repositories that support these methods.",
+  "license": {
+    "id": "Apache-2.0",
+    "title": "Apache License 2.0",
+    "url": "https://www.apache.org/licenses/LICENSE-2.0"
+  },
+  "publisher": {
+    "name": "https://cran.r-project.org"
+  },
+  "schema_version": "https://commonmeta.org/commonmeta_v1.0rc1.json",
+  "title": "R Interface to the DataONE REST API",
+  "url": "https://github.com/DataONEorg/rdataone",
+  "version": "2.0.0"
+}