cognite-neat 0.119.9__py3-none-any.whl → 0.121.0__py3-none-any.whl

cognite/neat/{_session → session}/_prepare.py

@@ -4,19 +4,19 @@ from typing import Any
 
 from rdflib import URIRef
 
-from cognite.neat._alpha import ExperimentalFlags
-from cognite.neat._graph.transformers import (
+from cognite.neat.core._graph.transformers import (
     ConnectionToLiteral,
     ConvertLiteral,
     LiteralToEntity,
     RelationshipAsEdgeTransformer,
 )
-from cognite.neat._graph.transformers._rdfpath import MakeConnectionOnExactMatch
-from cognite.neat._issues import IssueList
-from cognite.neat._issues.errors import NeatValueError
-from cognite.neat._rules.transformers import PrefixEntities, StandardizeNaming
-from cognite.neat._rules.transformers._converters import StandardizeSpaceAndVersion
-from cognite.neat._utils.text import humanize_collection
+from cognite.neat.core._graph.transformers._rdfpath import MakeConnectionOnExactMatch
+from cognite.neat.core._issues import IssueList
+from cognite.neat.core._issues.errors import NeatValueError
+from cognite.neat.core._rules.transformers import PrefixEntities, StandardizeNaming
+from cognite.neat.core._rules.transformers._converters import StandardizeSpaceAndVersion
+from cognite.neat.core._utils.text import humanize_collection
+from cognite.neat.session._experimental import ExperimentalFlags
 
 from ._state import SessionState
 from .exceptions import NeatSessionError, session_class_wrapper

cognite/neat/{_session → session}/_read.py

@@ -4,37 +4,38 @@ from typing import Any, Literal, cast
 from cognite.client.data_classes.data_modeling import DataModelId, DataModelIdentifier
 from cognite.client.utils.useful_types import SequenceNotStr
 
-from cognite.neat._alpha import ExperimentalFlags
-from cognite.neat._client import NeatClient
-from cognite.neat._constants import (
+from cognite.neat.core._client import NeatClient
+from cognite.neat.core._constants import (
     CLASSIC_CDF_NAMESPACE,
     get_default_prefixes_and_namespaces,
 )
-from cognite.neat._graph import examples as instances_examples
-from cognite.neat._graph import extractors
-from cognite.neat._graph.transformers import (
+from cognite.neat.core._graph import examples as instances_examples
+from cognite.neat.core._graph import extractors
+from cognite.neat.core._graph.extractors._classic_cdf._base import InstanceIdPrefix
+from cognite.neat.core._graph.transformers import (
     ConvertLiteral,
     LiteralToEntity,
     Transformers,
 )
-from cognite.neat._graph.transformers._prune_graph import (
+from cognite.neat.core._graph.transformers._prune_graph import (
     AttachPropertyFromTargetToSource,
     PruneDeadEndEdges,
     PruneInstancesOfUnknownType,
     PruneTypes,
 )
-from cognite.neat._issues import IssueList
-from cognite.neat._issues.errors import NeatValueError
-from cognite.neat._issues.warnings import MissingCogniteClientWarning
-from cognite.neat._rules import catalog, importers
-from cognite.neat._rules.importers import BaseImporter
-from cognite.neat._rules.models.entities._single_value import ViewEntity
-from cognite.neat._rules.transformers import ClassicPrepareCore
-from cognite.neat._rules.transformers._converters import (
+from cognite.neat.core._issues import IssueList
+from cognite.neat.core._issues.errors import NeatValueError
+from cognite.neat.core._issues.warnings import MissingCogniteClientWarning
+from cognite.neat.core._rules import catalog, importers
+from cognite.neat.core._rules.importers import BaseImporter
+from cognite.neat.core._rules.models.entities._single_value import ViewEntity
+from cognite.neat.core._rules.transformers import ClassicPrepareCore
+from cognite.neat.core._rules.transformers._converters import (
     ToEnterpriseModel,
     _SubsetEditableCDMRules,
 )
-from cognite.neat._utils.reader import NeatReader
+from cognite.neat.core._utils.reader import NeatReader
+from cognite.neat.session._experimental import ExperimentalFlags
 
 from ._state import SessionState
 from ._wizard import NeatObjectType, RDFFileType, XMLFileType, object_wizard, rdf_dm_wizard, xml_format_wizard
@@ -411,6 +412,119 @@ class CDFClassicAPI(BaseReadAPI):
 
         return all_issues
 
+    def time_series(self, data_set_external_id: str, identifier: Literal["id", "externalId"] = "id") -> IssueList:
+        """Read the time series from CDF into NEAT.
+
+        Args:
+            data_set_external_id: The external id of the data set
+            identifier: The identifier to use for the time series. Note selecting "id" can cause issues if the external
+                ID of the time series is missing. Default is "id".
+
+        Returns:
+            IssueList: A list of issues that occurred during the extraction.
+
+        Example:
+            ```python
+            neat.read.cdf.time_series("data_set_external_id")
+            ```
+
+        """
+        namespace = CLASSIC_CDF_NAMESPACE
+        self._state._raise_exception_if_condition_not_met(
+            "Read time series",
+            empty_rules_store_required=True,
+            empty_instances_store_required=True,
+            client_required=True,
+        )
+        extractor = extractors.TimeSeriesExtractor.from_dataset(
+            cast(NeatClient, self._state.client),
+            data_set_external_id=data_set_external_id,
+            namespace=namespace,
+            identifier=identifier,
+            prefix="Classic",
+            skip_connections=True,
+        )
+        self._state.instances.neat_prefix_by_predicate_uri.update(
+            {
+                namespace["dataSetId"]: InstanceIdPrefix.data_set,
+                namespace["assetId"]: InstanceIdPrefix.asset,
+            }
+        )
+        self._state.instances.neat_prefix_by_type_uri.update(
+            {namespace[f"Classic{extractor._default_rdf_type}"]: InstanceIdPrefix.time_series}
+        )
+        extract_issues = self._state.instances.store.write(extractor)
+
+        if identifier == "externalId":
+            self._state.quoted_source_identifiers = True
+
+        self._state.instances.store.transform(
+            ConvertLiteral(
+                namespace["ClassicTimeSeries"],
+                namespace["isString"],
+                lambda is_string: "string" if is_string else "numeric",
+            )
+        )
+
+        return extract_issues
+
+    def file_metadata(self, data_set_external_id: str, identifier: Literal["id", "externalId"] = "id") -> IssueList:
+        """Read the file metadata from CDF into NEAT.
+
+        Note all files that have InstanceId set will be silently skipped. This method is for extracting
+        non-contextualized file medata only. If you want to include the potential connection from file metadata
+        to assets, use the `neat.read.cdf.graph()` method instead and select the asset hierarchy connected to this file.
+
+        Args:
+            data_set_external_id: The external id of the data set
+            identifier: The identifier to use for the file metadata. Note selecting "id" can cause issues
+                if the external ID of the file metadata is missing. Default is "id".
+
+        Returns:
+            IssueList: A list of issues that occurred during the extraction.
+
+        Example:
+            ```python
+            neat.read.cdf.time_series("data_set_external_id")
+            ```
+        """
+        namespace = CLASSIC_CDF_NAMESPACE
+        self._state._raise_exception_if_condition_not_met(
+            "Read time series",
+            empty_rules_store_required=True,
+            empty_instances_store_required=True,
+            client_required=True,
+        )
+        extractor = extractors.FilesExtractor.from_dataset(
+            cast(NeatClient, self._state.client),
+            data_set_external_id=data_set_external_id,
+            namespace=namespace,
+            identifier=identifier,
+            prefix="Classic",
+            skip_connections=True,
+        )
+        self._state.instances.neat_prefix_by_predicate_uri.update(
+            {
+                namespace["dataSetId"]: InstanceIdPrefix.data_set,
+                namespace["assetId"]: InstanceIdPrefix.asset,
+            }
+        )
+        self._state.instances.neat_prefix_by_type_uri.update(
+            {namespace[f"Classic{extractor._default_rdf_type}"]: InstanceIdPrefix.time_series}
+        )
+        extract_issues = self._state.instances.store.write(extractor)
+
+        if identifier == "externalId":
+            self._state.quoted_source_identifiers = True
+
+        self._state.instances.store.transform(
+            LiteralToEntity(None, namespace["source"], "ClassicSourceSystem", "name"),
+        )
+        # The above transformations creates a new type, so we need to update
+        self._state.instances.neat_prefix_by_type_uri.update({namespace["ClassicSourceSystem"]: "ClassicSourceSystem_"})
+
+        return extract_issues
+
 
 @session_class_wrapper
 class ExcelReadAPI(BaseReadAPI):

cognite/neat/{_session → session}/_set.py

@@ -1,14 +1,14 @@
 from cognite.client import CogniteClient
 from cognite.client import data_modeling as dm
 
-from cognite.neat._client import NeatClient
-from cognite.neat._constants import COGNITE_MODELS
-from cognite.neat._graph.transformers import SetType
-from cognite.neat._issues import IssueList
-from cognite.neat._issues.errors import NeatValueError
-from cognite.neat._rules.models import DMSRules
-from cognite.neat._rules.transformers import SetIDDMSModel
-from cognite.neat._utils.text import humanize_collection
+from cognite.neat.core._client import NeatClient
+from cognite.neat.core._constants import COGNITE_MODELS
+from cognite.neat.core._graph.transformers import SetType
+from cognite.neat.core._issues import IssueList
+from cognite.neat.core._issues.errors import NeatValueError
+from cognite.neat.core._rules.models import DMSRules
+from cognite.neat.core._rules.transformers import SetIDDMSModel
+from cognite.neat.core._utils.text import humanize_collection
 
 from ._state import SessionState
 from .exceptions import NeatSessionError, session_class_wrapper

cognite/neat/{_session → session}/_show.py

@@ -6,11 +6,11 @@ import networkx as nx
 from IPython.display import HTML, display
 from pyvis.network import Network as PyVisNetwork  # type: ignore
 
-from cognite.neat._constants import IN_NOTEBOOK, IN_PYODIDE
-from cognite.neat._rules.analysis._base import RulesAnalysis
-from cognite.neat._session.exceptions import NeatSessionError
-from cognite.neat._utils.io_ import to_directory_compatible
-from cognite.neat._utils.rdf_ import remove_namespace_from_uri, uri_display_name
+from cognite.neat.core._constants import IN_NOTEBOOK, IN_PYODIDE
+from cognite.neat.core._rules.analysis._base import RulesAnalysis
+from cognite.neat.core._utils.io_ import to_directory_compatible
+from cognite.neat.core._utils.rdf_ import remove_namespace_from_uri, uri_display_name
+from cognite.neat.session.exceptions import NeatSessionError
 
 from ._state import SessionState
 from .exceptions import session_class_wrapper

cognite/neat/{_session → session}/_state.py

@@ -3,16 +3,16 @@ from typing import Literal, cast
 
 from rdflib import URIRef
 
-from cognite.neat._client import NeatClient
-from cognite.neat._graph.extractors import KnowledgeGraphExtractor
-from cognite.neat._issues import IssueList
-from cognite.neat._rules.importers import BaseImporter, InferenceImporter
-from cognite.neat._rules.models import DMSRules, InformationRules
-from cognite.neat._rules.transformers import (
+from cognite.neat.core._client import NeatClient
+from cognite.neat.core._graph.extractors import KnowledgeGraphExtractor
+from cognite.neat.core._issues import IssueList
+from cognite.neat.core._rules.importers import BaseImporter, InferenceImporter
+from cognite.neat.core._rules.models import DMSRules, InformationRules
+from cognite.neat.core._rules.transformers import (
     VerifiedRulesTransformer,
 )
-from cognite.neat._store import NeatGraphStore, NeatRulesStore
-from cognite.neat._utils.upload import UploadResultList
+from cognite.neat.core._store import NeatGraphStore, NeatRulesStore
+from cognite.neat.core._utils.upload import UploadResultList
 
 from .exceptions import NeatSessionError, _session_method_wrapper
 

cognite/neat/{_session → session}/_subset.py

@@ -1,9 +1,12 @@
 import warnings
 
-from cognite.neat._alpha import ExperimentalFlags
-from cognite.neat._issues._base import IssueList
-from cognite.neat._rules.models.entities._single_value import ClassEntity, ViewEntity
-from cognite.neat._rules.transformers import SubsetDMSRules, SubsetInformationRules
+from cognite.neat.core._issues._base import IssueList
+from cognite.neat.core._rules.models.entities._single_value import (
+    ClassEntity,
+    ViewEntity,
+)
+from cognite.neat.core._rules.transformers import SubsetDMSRules, SubsetInformationRules
+from cognite.neat.session._experimental import ExperimentalFlags
 
 from ._state import SessionState
 from .exceptions import NeatSessionError, session_class_wrapper

cognite/neat/{_session → session}/_template.py

@@ -3,22 +3,23 @@ from typing import Any, Literal
 
 from cognite.client.data_classes.data_modeling import DataModelIdentifier
 
-from cognite.neat._alpha import ExperimentalFlags
-from cognite.neat._issues import IssueList, catch_issues
-from cognite.neat._rules._shared import ReadRules
-from cognite.neat._rules.exporters import ExcelExporter
-from cognite.neat._rules.importers import ExcelImporter
-from cognite.neat._rules.models import InformationInputRules
-from cognite.neat._rules.models._base_rules import RoleTypes
-from cognite.neat._rules.models.dms import DMSValidation
-from cognite.neat._rules.transformers import (
+from cognite.neat.core._constants import BASE_MODEL
+from cognite.neat.core._issues import IssueList, catch_issues
+from cognite.neat.core._rules._shared import ReadRules
+from cognite.neat.core._rules.exporters import ExcelExporter
+from cognite.neat.core._rules.importers import ExcelImporter
+from cognite.neat.core._rules.models import InformationInputRules
+from cognite.neat.core._rules.models._base_rules import RoleTypes
+from cognite.neat.core._rules.models.dms import DMSValidation
+from cognite.neat.core._rules.transformers import (
     AddCogniteProperties,
     IncludeReferenced,
     ToDataProductModel,
     ToEnterpriseModel,
     VerifiedRulesTransformer,
 )
-from cognite.neat._utils.reader import NeatReader, PathReader
+from cognite.neat.core._utils.reader import NeatReader, PathReader
+from cognite.neat.session._experimental import ExperimentalFlags
 
 from ._state import SessionState
 from .exceptions import NeatSessionError, session_class_wrapper
@@ -126,19 +127,26 @@ class TemplateAPI:
             self._state.last_reference = last_rules
         return issues
 
-    def conceptual_model(self, io: Any) -> None:
+    def conceptual_model(
+        self,
+        io: Any,
+        base_model: BASE_MODEL = "CogniteCore",
+        total_concepts: int | None = None,
+    ) -> None:
         """This method will create a template for a conceptual data modeling
 
         Args:
             io: file path to the Excel sheet
+            base_model: The base model to use for implements in the conceptual data model.
+                        Currently only supporting CogniteCore.
+            total_concepts: The total number of concepts to provide in implements for selection.
+                         Default is None, meaning all concepts will be provided.
 
         """
         reader = NeatReader.create(io)
         path = reader.materialize_path()
 
-        ExcelExporter().template(RoleTypes.information, path)
-
-        return None
+        ExcelExporter(base_model=base_model, total_concepts=total_concepts).template(RoleTypes.information, path)
 
     def expand(self, io: Any, output: str | Path | None = None, dummy_property: str = "GUID") -> IssueList:
         """Creates a template for an extension of a Cognite model by expanding properties from CDM.

cognite/neat/{_session → session}/_to.py

@@ -6,18 +6,18 @@ from typing import Any, Literal, cast, overload
 from cognite.client import data_modeling as dm
 from cognite.client.data_classes.data_modeling import DataModelIdentifier
 
-from cognite.neat._alpha import ExperimentalFlags
-from cognite.neat._client._api_client import NeatClient
-from cognite.neat._constants import COGNITE_MODELS
-from cognite.neat._graph import loaders
-from cognite.neat._issues import IssueList, NeatIssue, catch_issues
-from cognite.neat._rules import exporters
-from cognite.neat._rules._constants import PATTERNS
-from cognite.neat._rules._shared import VerifiedRules
-from cognite.neat._rules.importers import DMSImporter
-from cognite.neat._rules.models import DMSRules, InformationRules
-from cognite.neat._rules.models.dms import DMSMetadata
-from cognite.neat._utils.upload import UploadResultList
+from cognite.neat.core._client._api_client import NeatClient
+from cognite.neat.core._constants import COGNITE_MODELS
+from cognite.neat.core._graph import loaders
+from cognite.neat.core._issues import IssueList, NeatIssue, catch_issues
+from cognite.neat.core._rules import exporters
+from cognite.neat.core._rules._constants import PATTERNS
+from cognite.neat.core._rules._shared import VerifiedRules
+from cognite.neat.core._rules.importers import DMSImporter
+from cognite.neat.core._rules.models import DMSRules, InformationRules
+from cognite.neat.core._rules.models.dms import DMSMetadata
+from cognite.neat.core._utils.upload import UploadResultList
+from cognite.neat.session._experimental import ExperimentalFlags
 
 from ._state import SessionState
 from .exceptions import NeatSessionError, session_class_wrapper

cognite/neat/{_session → session}/_wizard.py

@@ -3,7 +3,7 @@ from typing import Literal, TypeVar, get_args
 
 from rich.prompt import IntPrompt, Prompt
 
-from cognite.neat._rules._constants import PATTERNS
+from cognite.neat.core._rules._constants import PATTERNS
 
 RDFFileType = Literal["Ontology", "IMF Types", "Inference"]
 NeatObjectType = Literal["Data Model", "Instances"]

cognite/neat/{_session → session}/engine/_load.py

@@ -12,8 +12,8 @@ from cognite.client import CogniteClient
 from packaging.version import Version
 from packaging.version import parse as parse_version
 
-from cognite.neat._issues.errors import NeatValueError
 from cognite.neat._version import __engine__
+from cognite.neat.core._issues.errors import NeatValueError
 
 ENVIRONMENT_VARIABLE = "NEATENGINE"
 PACKAGE_NAME = "neatengine"

cognite/neat/{_session → session}/exceptions.py

@@ -3,10 +3,10 @@ import warnings
 from collections.abc import Callable
 from typing import Any
 
-from cognite.neat._alpha import ExperimentalFeatureWarning
-from cognite.neat._issues.errors import CDFMissingClientError, NeatImportError
-from cognite.neat._issues.errors._external import OxigraphStorageLockedError
-from cognite.neat._issues.errors._general import NeatValueError
+from cognite.neat.core._issues.errors import CDFMissingClientError, NeatImportError
+from cognite.neat.core._issues.errors._external import OxigraphStorageLockedError
+from cognite.neat.core._issues.errors._general import NeatValueError
+from cognite.neat.session._experimental import ExperimentalFeatureWarning
 
 from ._collector import _COLLECTOR
 

{cognite_neat-0.119.9.dist-info → cognite_neat-0.121.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cognite-neat
-Version: 0.119.9
+Version: 0.121.0
 Summary: Knowledge graph transformation
 Project-URL: Documentation, https://cognite-neat.readthedocs-hosted.com/
 Project-URL: Homepage, https://cognite-neat.readthedocs-hosted.com/

cognite_neat-0.121.0.dist-info/RECORD

@@ -0,0 +1,187 @@
+cognite/neat/__init__.py,sha256=12StS1dzH9_MElqxGvLWrNsxCJl9Hv8A2a9D0E5OD_U,193
+cognite/neat/_version.py,sha256=xJwEparSzjV7HbmKhGalETztG6Tt0qxJf_4jvRe15wA,46
+cognite/neat/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+cognite/neat/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+cognite/neat/core/_config.py,sha256=WT1BS8uADcFvGoUYOOfwFOVq_VBl472TisdoA3wLick,280
+cognite/neat/core/_constants.py,sha256=EAdGw6ZIg_5Bk8WfpVE26ul-xMC0BNL5RTev22f0iTA,8106
+cognite/neat/core/_shared.py,sha256=Ov59SWYboRRsncB_5V1ZC_BAoACfNLjo80vqE5Ru6wo,2325
+cognite/neat/core/_client/__init__.py,sha256=RQ7MwL8mwGqGHokRzsPqO3XStDzmI4-c12_gz1UPJ74,177
+cognite/neat/core/_client/_api_client.py,sha256=4Wa4IWK6oUJEsS2PMw5k1fPI99xq2q-TCC3vpXow7us,719
+cognite/neat/core/_client/testing.py,sha256=aIJWPWzl65OlF2Jr4yzKlC59TpLD8iHqpdU1Fwtkj-k,1180
+cognite/neat/core/_client/_api/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+cognite/neat/core/_client/_api/data_modeling_loaders.py,sha256=YEZP0V_RXenzzFSxDzt4SbVnpzB4VP0fcI-Bab1VLw8,39815
+cognite/neat/core/_client/_api/neat_instances.py,sha256=2rSt4FVPvLA0lzwwOvCC9fJk87jTF1vudLO9Z6pgpk4,3354
+cognite/neat/core/_client/_api/schema.py,sha256=lbA8Cka_7K_RjmaxdeqkVkIwKPfWeDvpYvvEOGI07xo,6967
+cognite/neat/core/_client/data_classes/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+cognite/neat/core/_client/data_classes/data_modeling.py,sha256=RvpUp9ygd-yffQFJ7O2mQqMLDPIa-dmip5zPb8QVIiw,6672
+cognite/neat/core/_client/data_classes/neat_sequence.py,sha256=QZWSfWnwk6KlYJvsInco4Wdwc1U8DnOQKWmHebArbQY,10830
+cognite/neat/core/_client/data_classes/schema.py,sha256=SpkBGbC2SUJG38Ixf1vYJINI66i_OZaT03q4XKRtK54,25067
+cognite/neat/core/_graph/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+cognite/neat/core/_graph/_shared.py,sha256=6avH6mtjxjHI7JDLkXwICxGvZwooGBr6APs1_w1To-A,940
+cognite/neat/core/_graph/_tracking/__init__.py,sha256=WOwsYieZtCW-iW15YkxUFrfKVVdLWdXHOGGStTwvE8A,91
+cognite/neat/core/_graph/_tracking/base.py,sha256=tDS7UHFj58sT1CtqWjp3pL5P3n4qqJuf06MpdT2tA2g,826
+cognite/neat/core/_graph/_tracking/log.py,sha256=rXjoRenOZO4TiZl7d1slBhwUUcEbtyD7uuKpg1MGmkg,933
+cognite/neat/core/_graph/examples/Knowledge-Graph-Nordic44-dirty.xml,sha256=ujJip6XBs5n8enVDPzNnuGkMBwv8g21tIr1sEVJpK5M,1439359
+cognite/neat/core/_graph/examples/Knowledge-Graph-Nordic44.xml,sha256=U2Ns-M4LRjT1fBkhmRj63ur7jDzlRtHK9yOLf_npZ_g,1437996
+cognite/neat/core/_graph/examples/__init__.py,sha256=yAjHVY3b5jOjmbW-iLbhvu7BG014TpGi3K4igkDqW5I,368
+cognite/neat/core/_graph/examples/skos-capturing-sheet-wind-topics.xlsx,sha256=CV_yK5ZSbYS_ktfIZUPD8Sevs47zpswLXQUDFkGE4Gw,45798
+cognite/neat/core/_graph/extractors/__init__.py,sha256=6Rl6_za_F1nnLGwOhXvGohvM0-P1sFrxHJRUVqQVBWo,2209
+cognite/neat/core/_graph/extractors/_base.py,sha256=FTCMv9O9Rj3YXpbeXtPiMT_urlbMi4RR8qET6hFWYY4,1937
+cognite/neat/core/_graph/extractors/_dict.py,sha256=Y5J5WvrIQOa762y59Jv2jNLFQmTSUBwL8XY-ormd7R0,4331
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