cognite-neat 0.106.0__py3-none-any.whl → 0.108.0__py3-none-any.whl

cognite/neat/_store/_rules_store.py

@@ -8,9 +8,11 @@ from pathlib import Path
 from typing import Any, cast
 
 import rdflib
+from cognite.client import data_modeling as dm
 
 from cognite.neat._client import NeatClient
 from cognite.neat._constants import DEFAULT_NAMESPACE
+from cognite.neat._graph.extractors import DMSGraphExtractor, KnowledgeGraphExtractor
 from cognite.neat._issues import IssueList, catch_issues
 from cognite.neat._issues.errors import NeatValueError
 from cognite.neat._rules._shared import ReadRules, Rules, T_VerifiedRules, VerifiedRules
@@ -67,12 +69,26 @@ class NeatRulesStore:
 
     def import_(self, importer: BaseImporter) -> IssueList:
         agent = importer.agent
+
         source_entity = Entity(
             was_attributed_to=UNKNOWN_AGENT,
             id_=importer.source_uri,
         )
+
         return self._do_activity(importer.to_rules, agent, source_entity, importer.description)[1]
 
+    def import_graph(self, extractor: KnowledgeGraphExtractor) -> IssueList:
+        agent = extractor.agent
+        source_entity = Entity(
+            was_attributed_to=UNKNOWN_AGENT,
+            id_=extractor.source_uri,
+        )
+        _, issues = self._do_activity(extractor.get_information_rules, agent, source_entity, extractor.description)
+        if isinstance(extractor, DMSGraphExtractor):
+            _, dms_issues = self._do_activity(extractor.get_dms_rules, agent, source_entity, extractor.description)
+            issues.extend(dms_issues)
+        return issues
+
     def transform(self, *transformer: RulesTransformer) -> IssueList:
         if not self.provenance:
             raise EmptyStore()
@@ -256,6 +272,55 @@ class NeatRulesStore:
         result, _ = self._do_activity(lambda: action(rules), agent, last_entity, description)
         return result
 
+    def _update_source_entity(self, source_entity: Entity, result: Rules, issue_list: IssueList) -> Entity:
+        """Update source entity to keep the unbroken provenance chain of changes."""
+
+        # Case 1: Store not empty, source of imported rules is not known
+        if not (source_id := self._get_source_id(result)):
+            raise NeatValueError(
+                "The data model to be read to the current NEAT session"
+                " has no relation to the session content."
+                " Import will be skipped."
+                "\n\nSuggestions:\n\t(1) Start a new NEAT session and "
+                "import the data model there."
+            )
+
+        # We are taking target entity as it is the entity that produce rules
+        # which were updated by activities outside of the rules tore
+        update_source_entity: Entity | None = self.provenance.target_entity(source_id)
+
+        # Case 2: source of imported rules not in rules_store
+        if not update_source_entity:
+            raise NeatValueError(
+                "The source of the data model being imported is not in"
+                " the content of this NEAT session."
+                " Import will be skipped."
+                "\n\nSuggestions:"
+                "\n\t(1) Start a new NEAT session and import the data model source"
+                "\n\t(2) Then import the data model itself"
+            )
+
+        # Case 3: source_entity in rules_store and but it is not the latest entity
+        if self.provenance[-1].target_entity.id_ != update_source_entity.id_:
+            raise NeatValueError(
+                "Source of imported data model is not the latest entity in the data model provenance."
+                "Pruning required to set the source entity to the latest entity in the provenance."
+            )
+
+        # Case 4: source_entity in rules_store and it is not the latest target entity
+        if self.provenance[-1].target_entity.id_ != update_source_entity.id_:
+            raise NeatValueError(
+                "Source of imported rules is not the latest entity in the provenance."
+                "Pruning required to set the source entity to the latest entity in the provenance."
+            )
+
+        # Case 5: source_entity in rules_store and it is the latest entity
+        # Here we need to check if the source and target entities are identical
+        # if they are ... we should raise an error and skip importing
+        # for now we will just return the source entity that we managed to extract
+
+        return update_source_entity or source_entity
+
     def _do_activity(
         self, action: Callable[[], Rules | None], agent: Agent, source_entity: Entity, description: str
     ) -> tuple[Any, IssueList]:
@@ -265,6 +330,18 @@ class NeatRulesStore:
             result = action()
         end = datetime.now(timezone.utc)
 
+        # This handles import activity that needs to be properly registered
+        # hence we check if class of action is subclass of BaseImporter
+        # and only if the store is not empty !
+        if (
+            hasattr(action, "__self__")
+            and issubclass(action.__self__.__class__, BaseImporter)
+            and source_entity.was_attributed_to == UNKNOWN_AGENT
+            and result
+            and not self.empty
+        ):
+            source_entity = self._update_source_entity(source_entity, result, issue_list)
+
         activity = Activity(
             was_associated_with=agent,
             ended_at_time=end,
@@ -276,6 +353,7 @@ class NeatRulesStore:
             was_generated_by=activity,
             result=result,
             issues=issue_list,
+            # here id can be bumped in case id already exists
             id_=self._create_id(result),
         )
         change = Change(
@@ -289,23 +367,57 @@ class NeatRulesStore:
         self.provenance.append(change)
         return result, issue_list
 
+    def _get_source_id(self, result: Rules) -> rdflib.URIRef | None:
+        """Return the source of the result."""
+
+        if isinstance(result, ReadRules) and result.rules is not None and result.rules.metadata.source_id:
+            return rdflib.URIRef(result.rules.metadata.source_id)
+        if isinstance(result, VerifiedRules):
+            return result.metadata.source_id
+        return None
+
+    def _get_data_model_id(self, result: Rules) -> dm.DataModelId | None:
+        """Return the source of the result."""
+
+        if isinstance(result, ReadRules) and result.rules is not None:
+            return result.rules.metadata.as_data_model_id()
+        if isinstance(result, VerifiedRules):
+            return result.metadata.as_data_model_id()
+        return None
+
     def _create_id(self, result: Any) -> rdflib.URIRef:
         identifier: rdflib.URIRef
+
+        # Case 1: Unsuccessful activity -> target entity will be EMPTY_ENTITY
         if result is None:
             identifier = EMPTY_ENTITY.id_
+
+        # Case 2: Result ReadRules
         elif isinstance(result, ReadRules):
+            # Case 2.1: ReadRules with no rules -> target entity will be EMPTY_ENTITY
             if result.rules is None:
                 identifier = EMPTY_ENTITY.id_
+
+            # Case 2.2: ReadRules with rules identified by metadata.identifier
             else:
                 identifier = result.rules.metadata.identifier
+
+        # Case 3: Result VerifiedRules, identifier will be metadata.identifier
         elif isinstance(result, VerifiedRules):
             identifier = result.metadata.identifier
+
+        # Case 4: Defaults to unknown entity
         else:
             identifier = DEFAULT_NAMESPACE["unknown-entity"]
 
+        # Here we check if the identifier is already in the iteration dictionary
+        # to track specific changes to the same entity, if it is we increment the iteration
         if identifier not in self._iteration_by_id:
             self._iteration_by_id[identifier] = 1
             return identifier
+
+        # If the identifier is already in the iteration dictionary we increment the iteration
+        # and update identifier to include the iteration number
         self._iteration_by_id[identifier] += 1
         return identifier + f"/Iteration_{self._iteration_by_id[identifier]}"
 
@@ -365,14 +477,31 @@ class NeatRulesStore:
                 return change.target_entity.result
         raise NeatValueError("No verified DMS rules found in the provenance.")
 
+    @property
+    def last_verified_information_rules(self) -> InformationRules:
+        for change in reversed(self.provenance):
+            if isinstance(change.target_entity, ModelEntity) and isinstance(
+                change.target_entity.result, InformationRules
+            ):
+                return change.target_entity.result
+        raise NeatValueError("No verified information rules found in the provenance.")
+
     @property
     def last_issues(self) -> IssueList:
         if not self.provenance:
             raise NeatValueError("No issues found in the provenance.")
-        return self.provenance[-1].target_entity.issues
+        last_change = self.provenance[-1]
+        if last_change.target_entity.issues:
+            return last_change.target_entity.issues
+        return last_change.source_entity.issues
 
     @property
     def last_outcome(self) -> UploadResultList:
         if self._last_outcome is not None:
             return self._last_outcome
         raise NeatValueError("No outcome found in the provenance.")
+
+    @property
+    def empty(self) -> bool:
+        """Check if the store is empty."""
+        return not self.provenance

cognite/neat/_utils/auth.py

@@ -6,6 +6,7 @@ from pathlib import Path
 from typing import Literal, TypeAlias, get_args
 
 from cognite.client import ClientConfig, CogniteClient
+from cognite.client.config import global_config
 from cognite.client.credentials import CredentialProvider, OAuthClientCredentials, OAuthInteractive, Token
 
 from cognite.neat import _version
@@ -33,6 +34,7 @@ def get_cognite_client(env_file_name: str) -> CogniteClient:
     """
     if not env_file_name.endswith(".env"):
         raise ValueError("env_file_name must end with '.env'")
+    global_config.disable_pypi_version_check = True
     # First try to load from .env file in repository root
     repo_root = _repo_root()
     if repo_root:
@@ -247,7 +249,7 @@ class EnvironmentVariables:
             is_optional = hasattr(self, field.name.lower())
             if is_optional and first_optional:
                 lines.append(
-                    "# The below variables are the defaults, they are automatically " "constructed unless they are set."
+                    "# The below variables are the defaults, they are automatically constructed unless they are set."
                 )
                 first_optional = False
             name = field.name.lower() if is_optional else field.name

cognite/neat/_version.py

@@ -1,2 +1,2 @@
-__version__ = "0.106.0"
+__version__ = "0.108.0"
 __engine__ = "^2.0.3"

{cognite_neat-0.106.0.dist-info → cognite_neat-0.108.0.dist-info}/METADATA

@@ -1,8 +1,7 @@
 Metadata-Version: 2.3
 Name: cognite-neat
-Version: 0.106.0
+Version: 0.108.0
 Summary: Knowledge graph transformation
-Home-page: https://cognite-neat.readthedocs-hosted.com/
 License: Apache-2.0
 Author: Nikola Vasiljevic
 Author-email: nikola.vasiljevic@cognite.com
@@ -54,6 +53,7 @@ Requires-Dist: tomli (>=2.0.1,<3.0.0) ; python_version < "3.11"
 Requires-Dist: typing_extensions (>=4.8,<5.0) ; python_version < "3.11"
 Requires-Dist: urllib3 (>=2,<3)
 Project-URL: Documentation, https://cognite-neat.readthedocs-hosted.com/
+Project-URL: Homepage, https://cognite-neat.readthedocs-hosted.com/
 Project-URL: Repository, https://github.com/cognitedata/neat
 Description-Content-Type: text/markdown
 

{cognite_neat-0.106.0.dist-info → cognite_neat-0.108.0.dist-info}/RECORD

@@ -10,9 +10,9 @@ cognite/neat/_client/data_classes/neat_sequence.py,sha256=QZWSfWnwk6KlYJvsInco4W
 cognite/neat/_client/data_classes/schema.py,sha256=uD8ExxEiIP3zhK4b--Q5fND-vmcC05a9WU5ItLsqG88,23179
 cognite/neat/_client/testing.py,sha256=c5ADJkRJFYGlJVQz-uPqxKExKXT297pxKh_ka4oGBjs,1082
 cognite/neat/_config.py,sha256=WT1BS8uADcFvGoUYOOfwFOVq_VBl472TisdoA3wLick,280
-cognite/neat/_constants.py,sha256=ei0ODx_P1Z4O-8tVK_K_7oRvEMzovVJ-0kw96fW8a_0,4999
+cognite/neat/_constants.py,sha256=nAuukl3nI5h6F55vA5xZZ7G3L_JCfLOk2MLuSJmBnpY,5734
 cognite/neat/_graph/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cognite/neat/_graph/_shared.py,sha256=g7XFITbVxdDyGZ6mlgFUv5cBycrU7QbPktRikdUVkks,863
+cognite/neat/_graph/_shared.py,sha256=6avH6mtjxjHI7JDLkXwICxGvZwooGBr6APs1_w1To-A,940
 cognite/neat/_graph/_tracking/__init__.py,sha256=WOwsYieZtCW-iW15YkxUFrfKVVdLWdXHOGGStTwvE8A,91
 cognite/neat/_graph/_tracking/base.py,sha256=qU7DQL_aeG22jS-uE3G17B1WL1sOOxHt-eR0XlTZngs,821
 cognite/neat/_graph/_tracking/log.py,sha256=_MGgMWxPDfKG4kbX-YL1UO0Lfq8nbcjyFFJeqN5wpuc,928
@@ -20,98 +20,100 @@ cognite/neat/_graph/examples/Knowledge-Graph-Nordic44-dirty.xml,sha256=ujJip6XBs
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 cognite/neat/_rules/models/entities/_constants.py,sha256=ToiLaaF-hGLPfn3AsKIIrfB4ZdTk4cY1RjM9gA1Qjkg,288
@@ -121,43 +123,43 @@ cognite/neat/_rules/models/entities/_single_value.py,sha256=GW1R8ko1vwjGhAs2Fl5B
 cognite/neat/_rules/models/entities/_types.py,sha256=df9rnXJJKciv2Bp-Ve2q4xdEJt6WWniq12Z0hW2d6sk,1917
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@@ -170,10 +172,10 @@ cognite/neat/_utils/text.py,sha256=0IffvBIAmeGh92F4T6xiEdd-vv3B7FOGEMbfuTktO5Y,4
 cognite/neat/_utils/time_.py,sha256=O30LUiDH9TdOYz8_a9pFqTtJdg8vEjC3qHCk8xZblG8,345
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 cognite/neat/_utils/xml_.py,sha256=FQkq84u35MUsnKcL6nTMJ9ajtG9D5i1u4VBnhGqP2DQ,1710
-cognite/neat/_version.py,sha256=jWs7dXFPYMcNh2DTNiuA6jFiNNxY_5JWElO8H2VTVfY,46
+cognite/neat/_version.py,sha256=spYyjCBzoNU6USA-VV_IW_pexlBvTqvkUnbgHAvjvmQ,46
 cognite/neat/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cognite_neat-0.106.0.dist-info/LICENSE,sha256=W8VmvFia4WHa3Gqxq1Ygrq85McUNqIGDVgtdvzT-XqA,11351
-cognite_neat-0.106.0.dist-info/METADATA,sha256=WEAC8ydzyYveGV3mP8SFMIRV5qMWkv2QbNln_pT1hvk,5349
-cognite_neat-0.106.0.dist-info/WHEEL,sha256=RaoafKOydTQ7I_I3JTrPCg6kUmTgtm4BornzOqyEfJ8,88
-cognite_neat-0.106.0.dist-info/entry_points.txt,sha256=SsQlnl8SNMSSjE3acBI835JYFtsIinLSbVmHmMEXv6E,51
-cognite_neat-0.106.0.dist-info/RECORD,,
+cognite_neat-0.108.0.dist-info/LICENSE,sha256=W8VmvFia4WHa3Gqxq1Ygrq85McUNqIGDVgtdvzT-XqA,11351
+cognite_neat-0.108.0.dist-info/METADATA,sha256=Dhtxkhy-OCyTVJxDewdVRTWg8CcOTEWsnRGGIcmJcGY,5361
+cognite_neat-0.108.0.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
+cognite_neat-0.108.0.dist-info/entry_points.txt,sha256=SsQlnl8SNMSSjE3acBI835JYFtsIinLSbVmHmMEXv6E,51
+cognite_neat-0.108.0.dist-info/RECORD,,

{cognite_neat-0.106.0.dist-info → cognite_neat-0.108.0.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 2.0.0
+Generator: poetry-core 2.0.1
 Root-Is-Purelib: true
 Tag: py3-none-any