cognite-neat 0.104.0__py3-none-any.whl → 0.105.0__py3-none-any.whl

cognite/neat/_session/_to.py

@@ -82,10 +82,10 @@ class ToAPI:
         return self._state.rule_store.export_to_file(exporter, Path(io))
 
     @overload
-    def yaml(self, io: None, format: Literal["neat"] = "neat") -> str: ...
+    def yaml(self, io: None, format: Literal["neat"] = "neat", skip_system_spaces: bool = True) -> str: ...
 
     @overload
-    def yaml(self, io: Any, format: Literal["neat", "toolkit"] = "neat") -> None: ...
+    def yaml(self, io: Any, format: Literal["neat", "toolkit"] = "neat", skip_system_spaces: bool = True) -> None: ...
 
     def yaml(
         self, io: Any | None = None, format: Literal["neat", "toolkit"] = "neat", skip_system_spaces: bool = True

cognite/neat/_store/_rules_store.py

@@ -110,8 +110,7 @@ class NeatRulesStore:
 
         agent = exporter.agent
         start = datetime.now(timezone.utc)
-        issue_list = IssueList()
-        with catch_issues(issue_list) as _:
+        with catch_issues() as issue_list:
             # Validate the type of the result
             result = exporter.export(source_entity.result)  # type: ignore[arg-type]
         end = datetime.now(timezone.utc)
@@ -151,8 +150,7 @@ class NeatRulesStore:
         target_id = DEFAULT_NAMESPACE[path.name]
         agent = exporter.agent
         start = datetime.now(timezone.utc)
-        issue_list = IssueList()
-        with catch_issues(issue_list) as _:
+        with catch_issues() as issue_list:
             exporter.export_to_file(source_entity.result, path)
         end = datetime.now(timezone.utc)
 
@@ -191,9 +189,8 @@ class NeatRulesStore:
         agent = exporter.agent
         start = datetime.now(timezone.utc)
         target_id = DEFAULT_NAMESPACE["upload-result"]
-        issue_list = IssueList()
         result: UploadResultList | None = None
-        with catch_issues(issue_list) as _:
+        with catch_issues() as issue_list:
             result = exporter.export_to_cdf(source_entity.result, client, dry_run)
         end = datetime.now(timezone.utc)
 
@@ -263,9 +260,8 @@ class NeatRulesStore:
         self, action: Callable[[], Rules | None], agent: Agent, source_entity: Entity, description: str
     ) -> tuple[Any, IssueList]:
         start = datetime.now(timezone.utc)
-        issue_list = IssueList()
         result: Rules | None = None
-        with catch_issues(issue_list) as _:
+        with catch_issues() as issue_list:
             result = action()
         end = datetime.now(timezone.utc)
 

cognite/neat/_utils/reader/_base.py

@@ -1,3 +1,4 @@
+import tempfile
 from abc import ABC, abstractmethod
 from collections.abc import Iterable
 from io import StringIO
@@ -33,6 +34,11 @@ class NeatReader(ABC):
         """Read the buffer as a string"""
         raise NotImplementedError()
 
+    @abstractmethod
+    def read_bytes(self) -> bytes:
+        """Read the buffer as bytes"""
+        raise NotImplementedError()
+
     @abstractmethod
     def size(self) -> int:
         """Size of the buffer in bytes"""
@@ -59,6 +65,10 @@ class NeatReader(ABC):
     def exists(self) -> bool:
         raise NotImplementedError
 
+    @abstractmethod
+    def materialize_path(self) -> Path:
+        raise NotImplementedError
+
 
 class PathReader(NeatReader):
     def __init__(self, path: Path):
@@ -72,6 +82,9 @@ class PathReader(NeatReader):
     def read_text(self) -> str:
         return self.path.read_text()
 
+    def read_bytes(self) -> bytes:
+        return self.path.read_bytes()
+
     def size(self) -> int:
         return self.path.stat().st_size
 
@@ -95,6 +108,9 @@ class PathReader(NeatReader):
     def exists(self) -> bool:
         return self.path.exists()
 
+    def materialize_path(self) -> Path:
+        return self.path
+
 
 class HttpFileReader(NeatReader):
     def __init__(self, url: str, path: str):
@@ -112,6 +128,11 @@ class HttpFileReader(NeatReader):
         response.raise_for_status()
         return response.text
 
+    def read_bytes(self) -> bytes:
+        response = requests.get(self._url)
+        response.raise_for_status()
+        return response.content
+
     def size(self) -> int:
         response = requests.head(self._url)
         response.raise_for_status()
@@ -133,6 +154,12 @@ class HttpFileReader(NeatReader):
         response = requests.head(self._url)
         return 200 <= response.status_code < 400
 
+    def materialize_path(self) -> Path:
+        path = Path(tempfile.gettempdir()).resolve() / "neat" / self.name
+        path.parent.mkdir(parents=True, exist_ok=True)
+        path.write_bytes(self.read_bytes())
+        return path
+
 
 class GitHubReader(HttpFileReader):
     raw_url = "https://raw.githubusercontent.com/"

cognite/neat/_version.py

@@ -1,2 +1,2 @@
-__version__ = "0.104.0"
+__version__ = "0.105.0"
 __engine__ = "^2.0.3"

{cognite_neat-0.104.0.dist-info → cognite_neat-0.105.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.3
 Name: cognite-neat
-Version: 0.104.0
+Version: 0.105.0
 Summary: Knowledge graph transformation
 Home-page: https://cognite-neat.readthedocs-hosted.com/
 License: Apache-2.0
@@ -29,6 +29,7 @@ Requires-Dist: google-auth-oauthlib ; extra == "google"
 Requires-Dist: gspread ; extra == "google"
 Requires-Dist: jsonpath-python (>=1.0.6,<2.0.0)
 Requires-Dist: lxml (>=5.3.0,<6.0.0) ; extra == "all"
+Requires-Dist: mistune (==3.0.2) ; extra == "docs"
 Requires-Dist: mixpanel (>=4.10.1,<5.0.0)
 Requires-Dist: mkdocs ; extra == "docs"
 Requires-Dist: mkdocs-autorefs (>=0.5.0,<0.6.0) ; extra == "docs"

cognite_neat-0.105.0.dist-info/RECORD

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+cognite/neat/_client/_api_client.py,sha256=6cNMizDuqMJZiOqiNRLX46BEtlCB-BpgGLyypksRVYU,616
+cognite/neat/_client/data_classes/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+cognite/neat/_client/data_classes/data_modeling.py,sha256=RvpUp9ygd-yffQFJ7O2mQqMLDPIa-dmip5zPb8QVIiw,6672
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+cognite/neat/_client/testing.py,sha256=c5ADJkRJFYGlJVQz-uPqxKExKXT297pxKh_ka4oGBjs,1082
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+cognite_neat-0.105.0.dist-info/METADATA,sha256=VocFhvXyWxYiP10dCC4xlD7SUyNq37jSH5BX6FqIPUA,5759
+cognite_neat-0.105.0.dist-info/WHEEL,sha256=RaoafKOydTQ7I_I3JTrPCg6kUmTgtm4BornzOqyEfJ8,88
+cognite_neat-0.105.0.dist-info/entry_points.txt,sha256=SsQlnl8SNMSSjE3acBI835JYFtsIinLSbVmHmMEXv6E,51
+cognite_neat-0.105.0.dist-info/RECORD,,

{cognite_neat-0.104.0.dist-info → cognite_neat-0.105.0.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 1.9.1
+Generator: poetry-core 2.0.0
 Root-Is-Purelib: true
 Tag: py3-none-any

cognite/neat/_app/api/asgi/metrics.py

@@ -1,4 +0,0 @@
-from prometheus_client import Counter, make_asgi_app
-
-counter = Counter("started_workflows", "Description of counter")
-prometheus_app = make_asgi_app()

cognite/neat/_app/api/configuration.py

@@ -1,98 +0,0 @@
-import logging
-import os
-from pathlib import Path
-from typing import Any
-
-from cognite.client import CogniteClient
-from fastapi import FastAPI
-
-from cognite import neat
-from cognite.neat._config import Config, configure_logging, copy_examples_to_directory, create_data_dir_structure
-from cognite.neat._constants import PACKAGE_DIRECTORY
-from cognite.neat._workflows.cdf_store import CdfStore
-from cognite.neat._workflows.manager import WorkflowManager
-from cognite.neat._workflows.triggers import TriggerManager
-
-UI_PATH = PACKAGE_DIRECTORY / "_app" / "ui" / "neat-app" / "build"
-
-
-class NeatApp:
-    def __init__(self, config: Config, cdf_client: CogniteClient | None = None):
-        self.config = config
-        self.cdf_client: CogniteClient | None = None
-        self.cdf_store: CdfStore | None = None
-        self.fast_api_app: FastAPI | None = None
-        self.cdf_client = cdf_client
-
-    def set_http_server(self, fast_api_app: FastAPI):
-        """Set the http server to be used by the triggers manager"""
-        self.fast_api_app = fast_api_app
-
-    def start(self, config: Config | None = None):
-        logging.info("Starting NeatApp")
-        if config:
-            self.config = config
-        logging.info("Initializing global objects")
-        if not self.cdf_client:
-            self.cdf_client = self.config.cdf_auth_config.get_client()
-        self.cdf_store = CdfStore(
-            self.cdf_client,
-            self.config.cdf_default_dataset_id,
-            workflows_storage_path=self.config.workflows_store_path,
-            rules_storage_path=self.config.rules_store_path,
-        )
-
-        # Automatically downloading workflows from CDF if enabled in config
-        if self.config.workflow_downloader_filter:
-            self.cdf_store.load_workflows_from_cfg_by_filter(self.config.workflow_downloader_filter)
-
-        self.workflow_manager = WorkflowManager(
-            client=self.cdf_client,
-            config=self.config,
-        )
-        self.workflow_manager.load_workflows_from_storage()
-        self.triggers_manager = TriggerManager(workflow_manager=self.workflow_manager)
-        self.triggers_manager.start_time_schedulers()
-        logging.info("NeatApp started")
-
-    def stop(self):
-        logging.info("Stopping NeatApp")
-        if self.triggers_manager:
-            self.triggers_manager.stop_scheduler_main_loop()
-        self.cdf_client = None
-        self.cdf_store = None
-        self.workflow_manager = None
-        self.triggers_manager = None
-        logging.info("NeatApp stopped")
-
-
-def create_neat_app() -> NeatApp:
-    logger = logging.getLogger(__name__)  # temporary logger before config is loaded
-
-    if os.environ.get("NEAT_CDF_PROJECT"):
-        logger.info("ENV NEAT_CDF_PROJECT is set, loading config from env.")
-        config = Config.from_env()
-    elif (config_path := Path(os.environ.get("NEAT_CONFIG_PATH", "config.yaml"))).exists():
-        logger.info(f"Loading config from {config_path.name}.")
-        config = Config.from_yaml(config_path)
-    else:
-        logger.error(f"Config file {config_path.name} not found.Exiting.")
-        config = Config()
-        config.to_yaml(config_path)
-
-    if config.load_examples:
-        copy_examples_to_directory(config)
-    else:
-        create_data_dir_structure(config)
-
-    configure_logging(config.log_level, config.log_format)
-    logging.info(f" Starting NEAT version {neat.__version__}")
-    logging.debug(
-        f" Config: {config.model_dump(exclude={'cdf_client': {'client_secret': ...}})}"  # type: ignore[arg-type]
-    )
-
-    return NeatApp(config)
-
-
-NEAT_APP = create_neat_app()
-CACHE_STORE: dict[str, Any] = {}

cognite/neat/_app/api/context_manager/__init__.py

@@ -1,3 +0,0 @@
-from cognite.neat._app.api.context_manager.manager import lifespan
-
-__all__ = ["lifespan"]

cognite/neat/_app/api/context_manager/manager.py

@@ -1,16 +0,0 @@
-import logging
-from contextlib import asynccontextmanager
-
-from fastapi import FastAPI
-
-from cognite.neat._app.api.configuration import NEAT_APP
-
-
-@asynccontextmanager
-async def lifespan(app_ref: FastAPI):
-    logging.info("Startup FastAPI server")
-    NEAT_APP.set_http_server(app_ref)
-    NEAT_APP.start()
-    yield
-    logging.info("FastApi shutdown event")
-    NEAT_APP.stop()

cognite/neat/_app/api/data_classes/rest.py

@@ -1,59 +0,0 @@
-import logging
-
-from pydantic import BaseModel, field_validator, model_validator
-
-
-class QueryRequest(BaseModel):
-    graph_name: str
-    workflow_name: str = "default"
-    query: str
-
-
-class RuleRequest(BaseModel):
-    graph_name: str
-    workflow_name: str = "default"
-    rule_type: str
-    rule: str
-
-
-class RunWorkflowRequest(BaseModel):
-    name: str
-    config: dict
-    start_step: str
-    sync: bool = False
-
-    @field_validator("config", mode="before")
-    def empty_string_to_dict(cls, value):
-        if value == "":
-            return {}
-        return value
-
-    @model_validator(mode="before")
-    def log_call(cls, values):
-        logging.info(f"RunWorkflowRequest: {values}")
-        return values
-
-
-class NodesAndEdgesRequest(BaseModel):
-    graph_name: str
-    workflow_name: str = "default"
-    node_class_filter: list[str]
-    src_edge_filter: list[str]
-    dst_edge_filter: list[str]
-    cache: bool = False
-    limit: int = 1000
-    node_name_property: str = ""
-    sparql_query: str = ""
-
-
-class DatatypePropertyRequest(BaseModel):
-    graph_name: str = "source"
-    workflow_name: str = ""
-    cache: bool = False
-    limit: int = 10
-
-
-class TransformationRulesUpdateRequest(BaseModel):
-    file_name: str = ""
-    output_format: str = "excel"
-    rules_object: dict = {}

cognite/neat/_app/api/explorer.py

@@ -1,66 +0,0 @@
-import logging
-
-import pkg_resources
-from fastapi import FastAPI
-from fastapi.middleware.cors import CORSMiddleware
-from fastapi.responses import RedirectResponse
-from fastapi.staticfiles import StaticFiles
-
-from cognite import neat
-from cognite.neat._app.api.asgi.metrics import prometheus_app
-from cognite.neat._app.api.configuration import NEAT_APP, UI_PATH
-from cognite.neat._app.api.context_manager import lifespan
-from cognite.neat._app.api.routers import (
-    configuration,
-    crud,
-    metrics,
-    workflows,
-)
-from cognite.neat._app.api.utils.logging import EndpointFilter
-
-app = FastAPI(title="Neat", lifespan=lifespan)
-
-# Define excluded endpoints
-EXCLUDED_ENDPOINTS = ["/api/workflow/stats"]
-
-# Add filter to the logger
-logging.getLogger("uvicorn.access").addFilter(EndpointFilter(EXCLUDED_ENDPOINTS))
-
-
-origins = [
-    "http://localhost:8000",
-    "http://localhost:3000",
-]
-
-app.add_middleware(
-    CORSMiddleware,
-    allow_origins=["*"],
-    allow_credentials=True,
-    allow_methods=["*"],
-    allow_headers=["*"],
-)
-
-# Mount ASGI apps
-app.mount("/metrics", prometheus_app)
-app.mount("/static", StaticFiles(directory=UI_PATH), name="static")
-app.mount("/data", StaticFiles(directory=NEAT_APP.config.data_store_path), name="data")
-
-
-# Mount routers
-app.include_router(configuration.router)
-app.include_router(metrics.router)
-app.include_router(workflows.router)
-app.include_router(crud.router)
-
-
-# General routes
-@app.get("/")
-def read_root():
-    return RedirectResponse("/static/index.html")
-
-
-@app.get("/api/about")
-def get_about():
-    installed_packages = pkg_resources.working_set
-    installed_packages_list = sorted([f"{i.key}=={i.version}" for i in installed_packages])
-    return {"version": neat.__version__, "packages": installed_packages_list}

cognite/neat/_app/api/routers/configuration.py

@@ -1,25 +0,0 @@
-import logging
-import os
-from pathlib import Path
-
-from fastapi import APIRouter
-
-from cognite.neat._app.api.configuration import NEAT_APP
-from cognite.neat._config import Config
-
-router = APIRouter()
-
-
-@router.get("/api/configs/global")
-def get_configs():
-    return NEAT_APP.config.as_legacy_config()
-
-
-@router.post("/api/configs/global")
-def set_configs(request: Config):
-    logging.info(f"Updating global config: {request}")
-    config = request
-    config.to_yaml(Path(os.environ.get("NEAT_CONFIG_PATH", "config.yaml")))
-    NEAT_APP.stop()
-    NEAT_APP.start(config=config)
-    return config