code-loader 1.0.93.dev4__py3-none-any.whl → 1.0.94__py3-none-any.whl

code_loader/contract/datasetclasses.py

@@ -38,6 +38,9 @@ class PreprocessResponse:
     sample_ids: Optional[Union[List[str], List[int]]] = None
     state: Optional[DataStateType] = None
     sample_id_type: Optional[Union[Type[str], Type[int]]] = None
+    sample_ids_to_instance_mappings: Optional[Dict[Union[str, int], Union[List[str], List[int]]]] = None # in use only for element instance
+    instance_to_sample_ids_mappings: Optional[Dict[Union[str, int], Union[str, int]]] = None # in use only for element instance
+
 
     def __post_init__(self) -> None:
         def is_valid_string(s: str) -> bool:
@@ -65,8 +68,14 @@ class PreprocessResponse:
         assert self.sample_ids is not None
         return len(self.sample_ids)
 
+@dataclass
+class ElementInstance:
+    name: str
+    mask: npt.NDArray[np.float32]
+    # instance_filling_type: InstanceFillingType # TODO: implement InstanceFillingType
 
 SectionCallableInterface = Callable[[Union[int, str], PreprocessResponse], npt.NDArray[np.float32]]
+InstanceCallableInterface = Callable[[int, PreprocessResponse], List[ElementInstance]]
 
 MetadataSectionCallableInterface = Union[
     Callable[[Union[int, str], PreprocessResponse], int],
@@ -188,6 +197,10 @@ class InputHandler(DatasetBaseHandler):
     shape: Optional[List[int]] = None
     channel_dim: Optional[int] = -1
 
+@dataclass
+class ElementInstanceMasksHandler:
+    name: str
+    function: InstanceCallableInterface
 
 @dataclass
 class GroundTruthHandler(DatasetBaseHandler):
@@ -205,7 +218,7 @@ class MetadataHandler:
 class PredictionTypeHandler:
     name: str
     labels: List[str]
-    channel_dim: int = -1
+    channel_dim: int
 
 
 @dataclass
@@ -223,6 +236,7 @@ class DatasetIntegrationSetup:
     unlabeled_data_preprocess: Optional[UnlabeledDataPreprocessHandler] = None
     visualizers: List[VisualizerHandler] = field(default_factory=list)
     inputs: List[InputHandler] = field(default_factory=list)
+    instance_masks: List[ElementInstanceMasksHandler] = field(default_factory=list)
     ground_truths: List[GroundTruthHandler] = field(default_factory=list)
     metadata: List[MetadataHandler] = field(default_factory=list)
     prediction_types: List[PredictionTypeHandler] = field(default_factory=list)
@@ -239,3 +253,5 @@ class DatasetSample:
     metadata_is_none: Dict[str, bool]
     index: Union[int, str]
     state: DataStateEnum
+    instance_masks: Optional[Dict[str, List[ElementInstance]]] = None
+

code_loader/contract/visualizer_classes.py

@@ -121,19 +121,23 @@ class LeapGraph:
         x_label = 'Frequency [Seconds]'
         y_label = 'Amplitude [Voltage]'
         x_range = (0.1, 3.0)
-        leap_graph = LeapGraph(data=graph_data, x_label=x_label, y_label=y_label, x_range=x_range)
+        legend = ['experiment1', 'experiment2', 'experiment3']
+        leap_graph = LeapGraph(data=graph_data, x_label=x_label, y_label=y_label, x_range=x_range, legend=legend)
     """
     data: npt.NDArray[np.float32]
     type: LeapDataType = LeapDataType.Graph
     x_label: Optional[str] = None
     y_label: Optional[str] = None
     x_range: Optional[Tuple[float,float]] = None
+    legend: Optional[List[str]] = None
 
     def __post_init__(self) -> None:
         validate_type(self.type, LeapDataType.Graph)
         validate_type(type(self.data), np.ndarray)
         validate_type(self.data.dtype, np.float32)
-        validate_type(len(self.data.shape), 2, 'Graph must be of shape 2')
+        validate_type(len(self.data.shape), 2, f'Graph must be of shape 2')
+        if self.legend:
+            validate_type(self.data.shape[1], len(self.legend), 'Number of labels supplied should equal the number of graphs')
         validate_type(type(self.x_label), [str, type(None)], 'x_label must be a string or None')
         validate_type(type(self.y_label), [str, type(None)], 'y_label must be a string or None')
         validate_type(type(self.x_range), [tuple, type(None)], 'x_range must be a tuple or None')

code_loader/inner_leap_binder/leapbinder.py

@@ -10,14 +10,15 @@ from code_loader.contract.datasetclasses import SectionCallableInterface, InputH
     MetadataSectionCallableInterface, UnlabeledDataPreprocessHandler, CustomLayerHandler, MetricHandler, \
     CustomCallableInterfaceMultiArgs, ConfusionMatrixCallableInterfaceMultiArgs, LeapData, \
     CustomMultipleReturnCallableInterfaceMultiArgs, DatasetBaseHandler, custom_latent_space_attribute, \
-    RawInputsForHeatmap, VisualizerHandlerData, MetricHandlerData, CustomLossHandlerData, SamplePreprocessResponse
+    RawInputsForHeatmap, VisualizerHandlerData, MetricHandlerData, CustomLossHandlerData, SamplePreprocessResponse, \
+    ElementInstanceMasksHandler, InstanceCallableInterface
 from code_loader.contract.enums import LeapDataType, DataStateEnum, DataStateType, MetricDirection, DatasetMetadataType
 from code_loader.contract.mapping import NodeConnection, NodeMapping, NodeMappingType
 from code_loader.contract.responsedataclasses import DatasetTestResultPayload
 from code_loader.contract.visualizer_classes import map_leap_data_type_to_visualizer_class
 from code_loader.default_losses import loss_name_to_function
 from code_loader.default_metrics import metrics_names_to_functions_and_direction
-from code_loader.utils import to_numpy_return_wrapper, get_shape
+from code_loader.utils import to_numpy_return_wrapper, get_shape, to_numpy_return_masks_wrapper
 from code_loader.visualizers.default_visualizers import DefaultVisualizer, \
     default_graph_visualizer, \
     default_image_visualizer, default_horizontal_bar_visualizer, default_word_visualizer, \
@@ -234,6 +235,30 @@ class LeapBinder:
 
         self._encoder_names.append(name)
 
+
+    def set_instance_masks(self, function: InstanceCallableInterface, name: str) -> None:
+        """
+        Set the input handler function.
+
+        Args:
+        function (SectionCallableInterface): The input handler function.
+        name (str): The name of the input section.
+        channel_dim (int): The dimension of the channels axis
+
+        Example:
+            def input_encoder(subset: PreprocessResponse, index: int) -> np.ndarray:
+                # Return the processed input data for the given index and given subset response
+                img_path = subset.`data["images"][idx]
+                img = read_img(img_path)
+                img = normalize(img)
+                return img
+
+            leap_binder.set_input(input_encoder, name='input_encoder', channel_dim=-1)
+        """
+        function = to_numpy_return_masks_wrapper(function)
+        self.setup_container.instance_masks.append(ElementInstanceMasksHandler(name, function))
+
+
     def add_custom_loss(self, function: CustomCallableInterface, name: str) -> None:
         """
         Add a custom loss function to the setup.

code_loader/inner_leap_binder/leapbinder_decorators.py

@@ -1,5 +1,5 @@
 # mypy: ignore-errors
-import os
+
 from typing import Optional, Union, Callable, List, Dict
 
 import numpy as np
@@ -8,7 +8,7 @@ import numpy.typing as npt
 from code_loader.contract.datasetclasses import CustomCallableInterfaceMultiArgs, \
     CustomMultipleReturnCallableInterfaceMultiArgs, ConfusionMatrixCallableInterfaceMultiArgs, CustomCallableInterface, \
     VisualizerCallableInterface, MetadataSectionCallableInterface, PreprocessResponse, SectionCallableInterface, \
-    ConfusionMatrixElement, SamplePreprocessResponse, PredictionTypeHandler
+    ConfusionMatrixElement, SamplePreprocessResponse, InstanceCallableInterface
 from code_loader.contract.enums import MetricDirection, LeapDataType, DatasetMetadataType
 from code_loader import leap_binder
 from code_loader.contract.mapping import NodeMapping, NodeMappingType, NodeConnection
@@ -16,77 +16,14 @@ from code_loader.contract.visualizer_classes import LeapImage, LeapImageMask, Le
     LeapHorizontalBar, LeapImageWithBBox, LeapImageWithHeatmap
 
 
-mapping_runtime_mode_env_var_mame = '__MAPPING_RUNTIME_MODE__'
-
-
-def _add_mapping_connection(user_unique_name, connection_destinations, arg_names, name, node_mapping_type):
-    main_node_mapping = NodeMapping(name, node_mapping_type, user_unique_name, arg_names=arg_names)
-    node_inputs = {}
-    for arg_name, destination in zip(arg_names, connection_destinations):
-        node_inputs[arg_name] = destination.node_mapping
-
-    leap_binder.mapping_connections.append(NodeConnection(main_node_mapping, node_inputs))
-
-
 def _add_mapping_connections(connects_to, arg_names, node_mapping_type, name):
     for user_unique_name, connection_destinations in connects_to.items():
-        _add_mapping_connection(user_unique_name, connection_destinations, arg_names, name, node_mapping_type)
-
-
-
-
-def tensorleap_load_model(prediction_types: Optional[List[PredictionTypeHandler]] = None):
-    for i, prediction_type in enumerate(prediction_types):
-        leap_binder.add_prediction(prediction_type.name, prediction_type.labels, prediction_type.channel_dim, i)
-
-    def decorating_function(load_model_func):
-        class TempMapping:
-            pass
-
-        def mapping_inner():
-            class ModelOutputPlaceholder:
-                def __init__(self):
-                    self.node_mapping = NodeMapping('', NodeMappingType.Prediction0)
-
-                def __getitem__(self, key):
-                    assert isinstance(key, int), \
-                        f'Expected key to be an int, got {type(key)} instead.'
-
-                    ret = TempMapping()
-                    ret.node_mapping = NodeMapping('', NodeMappingType(f'Prediction{str(key)}'))
-                    return ret
-
-            class ModelPlaceholder:
-                #keras interface
-                def __call__(self, arg):
-                    if isinstance(arg, list):
-                        for i, elem in enumerate(arg):
-                            elem.node_mapping.type = NodeMappingType[f'Input{str(i)}']
-                    else:
-                        arg.node_mapping.type = NodeMappingType.Input0
-
-                    return ModelOutputPlaceholder()
-
-                # onnx runtime interface
-                def run(self, output_names, input_dict):
-                    assert output_names is None
-                    assert isinstance(input_dict, dict), \
-                        f'Expected input_dict to be a dict, got {type(input_dict)} instead.'
-                    for i, elem in enumerate(input_dict.values()):
-                        elem.node_mapping.type = NodeMappingType[f'Input{str(i)}']
-
-                    return ModelOutputPlaceholder()
-
-            return ModelPlaceholder()
-
-
-        if os.environ[mapping_runtime_mode_env_var_mame]:
-            return mapping_inner
-        else:
-            return load_model_func
-
-    return decorating_function
+        main_node_mapping = NodeMapping(name, node_mapping_type, user_unique_name, arg_names=arg_names)
+        node_inputs = {}
+        for arg_name, destination in zip(arg_names, connection_destinations):
+            node_inputs[arg_name] = destination.node_mapping
 
+        leap_binder.mapping_connections.append(NodeConnection(main_node_mapping, node_inputs))
 
 
 def tensorleap_custom_metric(name: str,
@@ -94,8 +31,8 @@ def tensorleap_custom_metric(name: str,
                              compute_insights: Optional[Union[bool, Dict[str, bool]]] = None,
                              connects_to=None):
     def decorating_function(user_function: Union[CustomCallableInterfaceMultiArgs,
-            CustomMultipleReturnCallableInterfaceMultiArgs,
-            ConfusionMatrixCallableInterfaceMultiArgs]):
+    CustomMultipleReturnCallableInterfaceMultiArgs,
+    ConfusionMatrixCallableInterfaceMultiArgs]):
         for metric_handler in leap_binder.setup_container.metrics:
             if metric_handler.metric_handler_data.name == name:
                 raise Exception(f'Metric with name {name} already exists. '
@@ -182,31 +119,14 @@ def tensorleap_custom_metric(name: str,
                         (f'tensorleap_custom_metric validation failed: '
                          f'compute_insights should be boolean. Got {type(compute_insights)}.')
 
+
         def inner(*args, **kwargs):
             _validate_input_args(*args, **kwargs)
             result = user_function(*args, **kwargs)
             _validate_result(result)
             return result
 
-        def mapping_inner(*args, **kwargs):
-            user_unique_name = mapping_inner.name
-            if 'user_unique_name' in kwargs:
-                user_unique_name = kwargs['user_unique_name']
-
-            ordered_connections = [kwargs[n] for n in mapping_inner.arg_names if n in kwargs]
-            ordered_connections = list(args) + ordered_connections
-            _add_mapping_connection(user_unique_name, ordered_connections, mapping_inner.arg_names,
-                                    mapping_inner.name,  NodeMappingType.Metric)
-
-            return None
-
-        mapping_inner.arg_names = leap_binder.setup_container.metrics[-1].metric_handler_data.arg_names
-        mapping_inner.name = name
-
-        if os.environ[mapping_runtime_mode_env_var_mame]:
-            return mapping_inner
-        else:
-            return inner
+        return inner
 
     return decorating_function
 
@@ -266,25 +186,7 @@ def tensorleap_custom_visualizer(name: str, visualizer_type: LeapDataType,
             _validate_result(result)
             return result
 
-        def mapping_inner(*args, **kwargs):
-            user_unique_name = mapping_inner.name
-            if 'user_unique_name' in kwargs:
-                user_unique_name = kwargs['user_unique_name']
-
-            ordered_connections = [kwargs[n] for n in mapping_inner.arg_names if n in kwargs]
-            ordered_connections = list(args) + ordered_connections
-            _add_mapping_connection(user_unique_name, ordered_connections, mapping_inner.arg_names,
-                                    mapping_inner.name, NodeMappingType.Visualizer)
-
-            return None
-
-        mapping_inner.arg_names = leap_binder.setup_container.visualizers[-1].visualizer_handler_data.arg_names
-        mapping_inner.name = name
-
-        if os.environ[mapping_runtime_mode_env_var_mame]:
-            return mapping_inner
-        else:
-            return inner
+        return inner
 
     return decorating_function
 
@@ -368,6 +270,60 @@ def tensorleap_preprocess():
 
     return decorating_function
 
+def tensorleap_element_instance_preprocess(instance_mask_encoder: Callable[[int, PreprocessResponse], List[PreprocessResponse]]):
+    def decorating_function(user_function: Callable[[], List[PreprocessResponse]]):
+        def user_function_instance() -> List[PreprocessResponse]:
+            result = user_function()
+            for preprocess_response in result:
+                sample_ids_to_instance_mappings = {}
+                instance_to_sample_ids_mappings = {}
+                all_sample_ids = preprocess_response.sample_ids.copy()
+                for sample_id in preprocess_response.sample_ids:
+                    instances_masks = instance_mask_encoder(sample_id, preprocess_response)
+                    instances_ids = [f'{sample_id}_{instance_id}' for instance_id in range(len(instances_masks))]
+                    sample_ids_to_instance_mappings[sample_id] = instances_ids
+                    instance_to_sample_ids_mappings[sample_id] = sample_id
+                    for instance_id in instances_ids:
+                        instance_to_sample_ids_mappings[instance_id] = sample_id
+                    all_sample_ids.extend(instances_ids)
+                preprocess_response.sample_ids_to_instance_mappings = sample_ids_to_instance_mappings
+                preprocess_response.instance_to_sample_ids_mappings = instance_to_sample_ids_mappings
+                preprocess_response.sample_ids = all_sample_ids
+            return result
+
+
+        def metadata_is_instance(idx: str, preprocess: PreprocessResponse) -> str:
+            return "0"
+        leap_binder.set_preprocess(user_function_instance)
+        leap_binder.set_metadata(metadata_is_instance, "metadata_is_instance")
+
+        def _validate_input_args(*args, **kwargs):
+            assert len(args) == 0 and len(kwargs) == 0, \
+                (f'tensorleap_preprocess validation failed: '
+                 f'The function should not take any arguments. Got {args} and {kwargs}.')
+
+        def _validate_result(result):
+            assert isinstance(result, list), \
+                (f'tensorleap_preprocess validation failed: '
+                 f'The return type should be a list. Got {type(result)}.')
+            for i, response in enumerate(result):
+                assert isinstance(response, PreprocessResponse), \
+                    (f'tensorleap_preprocess validation failed: '
+                     f'Element #{i} in the return list should be a PreprocessResponse. Got {type(response)}.')
+            assert len(set(result)) == len(result), \
+                (f'tensorleap_preprocess validation failed: '
+                 f'The return list should not contain duplicate PreprocessResponse objects.')
+
+        def inner(*args, **kwargs):
+            _validate_input_args(*args, **kwargs)
+            result = user_function_instance()
+            _validate_result(result)
+            return result
+
+        return inner
+
+    return decorating_function
+
 
 def tensorleap_unlabeled_preprocess():
     def decorating_function(user_function: Callable[[], PreprocessResponse]):
@@ -394,6 +350,38 @@ def tensorleap_unlabeled_preprocess():
     return decorating_function
 
 
+def tensorleap_instances_masks_encoder(name: str):
+    def decorating_function(user_function: InstanceCallableInterface):
+        leap_binder.set_instance_masks(user_function, name)
+
+        def _validate_input_args(sample_id: Union[int, str], preprocess_response: PreprocessResponse):
+            assert isinstance(sample_id, (int, str)), \
+                (f'tensorleap_input_encoder validation failed: '
+                 f'Argument sample_id should be either int or str. Got {type(sample_id)}.')
+            assert isinstance(preprocess_response, PreprocessResponse), \
+                (f'tensorleap_input_encoder validation failed: '
+                 f'Argument preprocess_response should be a PreprocessResponse. Got {type(preprocess_response)}.')
+            assert type(sample_id) == preprocess_response.sample_id_type, \
+                (f'tensorleap_input_encoder validation failed: '
+                 f'Argument sample_id should be as the same type as defined in the preprocess response '
+                 f'{preprocess_response.sample_id_type}. Got {type(sample_id)}.')
+
+        def _validate_result(result):
+            assert isinstance(result, list), \
+                (f'tensorleap_input_encoder validation failed: '
+                 f'Unsupported return type. Should be a numpy array. Got {type(result)}.')
+
+        def inner(sample_id, preprocess_response):
+            _validate_input_args(sample_id, preprocess_response)
+            result = user_function(sample_id, preprocess_response)
+            _validate_result(result)
+            return result
+
+        return inner
+
+    return decorating_function
+
+
 def tensorleap_input_encoder(name: str, channel_dim=-1, model_input_index=None):
     def decorating_function(user_function: SectionCallableInterface):
         for input_handler in leap_binder.setup_container.inputs:
@@ -438,21 +426,7 @@ def tensorleap_input_encoder(name: str, channel_dim=-1, model_input_index=None):
             node_mapping_type = NodeMappingType(f'Input{str(model_input_index)}')
         inner.node_mapping = NodeMapping(name, node_mapping_type)
 
-
-        def mapping_inner(*args, **kwargs):
-            class TempMapping:
-                pass
-            ret = TempMapping()
-            ret.node_mapping = mapping_inner.node_mapping
-
-            return ret
-
-        mapping_inner.node_mapping = NodeMapping(name, node_mapping_type)
-
-        if os.environ[mapping_runtime_mode_env_var_mame]:
-            return mapping_inner
-        else:
-            return inner
+        return inner
 
     return decorating_function
 
@@ -494,20 +468,9 @@ def tensorleap_gt_encoder(name: str):
 
         inner.node_mapping = NodeMapping(name, NodeMappingType.GroundTruth)
 
-        def mapping_inner(*args, **kwargs):
-            class TempMapping:
-                pass
-            ret = TempMapping()
-            ret.node_mapping = mapping_inner.node_mapping
-
-            return ret
+        return inner
 
-        mapping_inner.node_mapping = NodeMapping(name, NodeMappingType.GroundTruth)
 
-        if os.environ[mapping_runtime_mode_env_var_mame]:
-            return mapping_inner
-        else:
-            return inner
 
     return decorating_function
 
@@ -563,25 +526,7 @@ def tensorleap_custom_loss(name: str, connects_to=None):
             _validate_result(result)
             return result
 
-        def mapping_inner(*args, **kwargs):
-            user_unique_name = mapping_inner.name
-            if 'user_unique_name' in kwargs:
-                user_unique_name = kwargs['user_unique_name']
-
-            ordered_connections = [kwargs[n] for n in mapping_inner.arg_names if n in kwargs]
-            ordered_connections = list(args) + ordered_connections
-            _add_mapping_connection(user_unique_name, ordered_connections, mapping_inner.arg_names,
-                                    mapping_inner.name, NodeMappingType.CustomLoss)
-
-            return None
-
-        mapping_inner.arg_names = leap_binder.setup_container.custom_loss_handlers[-1].custom_loss_handler_data.arg_names
-        mapping_inner.name = name
-
-        if os.environ[mapping_runtime_mode_env_var_mame]:
-            return mapping_inner
-        else:
-            return inner
+        return inner
 
     return decorating_function
 

code_loader/leaploader.py

@@ -2,7 +2,6 @@
 import importlib.util
 import inspect
 import io
-import os
 import sys
 from contextlib import redirect_stdout
 from functools import lru_cache
@@ -15,7 +14,8 @@ import numpy.typing as npt
 from code_loader.contract.datasetclasses import DatasetSample, DatasetBaseHandler, GroundTruthHandler, \
     PreprocessResponse, VisualizerHandler, LeapData, \
     PredictionTypeHandler, MetadataHandler, CustomLayerHandler, MetricHandler, VisualizerHandlerData, MetricHandlerData, \
-    MetricCallableReturnType, CustomLossHandlerData, CustomLossHandler, RawInputsForHeatmap, SamplePreprocessResponse
+    MetricCallableReturnType, CustomLossHandlerData, CustomLossHandler, RawInputsForHeatmap, SamplePreprocessResponse, \
+    ElementInstance
 from code_loader.contract.enums import DataStateEnum, TestingSectionEnum, DataStateType, DatasetMetadataType
 from code_loader.contract.exceptions import DatasetScriptException
 from code_loader.contract.responsedataclasses import DatasetIntegParseResult, DatasetTestResultPayload, \
@@ -23,7 +23,6 @@ from code_loader.contract.responsedataclasses import DatasetIntegParseResult, Da
     VisualizerInstance, PredictionTypeInstance, ModelSetup, CustomLayerInstance, MetricInstance, CustomLossInstance, \
     EngineFileContract
 from code_loader.inner_leap_binder import global_leap_binder
-from code_loader.inner_leap_binder.leapbinder_decorators import mapping_runtime_mode_env_var_mame
 from code_loader.leaploaderbase import LeapLoaderBase
 from code_loader.utils import get_root_exception_file_and_line_number
 
@@ -152,6 +151,22 @@ class LeapLoader(LeapLoaderBase):
                                state=state)
         return sample
 
+    def get_sample_with_masks(self, state: DataStateEnum, sample_id: Union[int, str]) -> DatasetSample:
+        self.exec_script()
+        preprocess_result = self._preprocess_result()
+        if state == DataStateEnum.unlabeled and sample_id not in preprocess_result[state].sample_ids:
+            self._preprocess_result(update_unlabeled_preprocess=True)
+
+        metadata, metadata_is_none = self._get_metadata(state, sample_id)
+        sample = DatasetSample(inputs=self._get_inputs(state, sample_id),
+                               gt=None if state == DataStateEnum.unlabeled else self._get_gt(state, sample_id),
+                               metadata=metadata,
+                               metadata_is_none=metadata_is_none,
+                               index=sample_id,
+                               state=state,
+                               instance_masks=self._get_masks(state, sample_id))
+        return sample
+
     def check_dataset(self) -> DatasetIntegParseResult:
         test_payloads: List[DatasetTestResultPayload] = []
         setup_response = None
@@ -159,7 +174,6 @@ class LeapLoader(LeapLoaderBase):
         stdout_steam = io.StringIO()
         with redirect_stdout(stdout_steam):
             try:
-                os.environ[mapping_runtime_mode_env_var_mame] = 'TRUE'
                 self.exec_script()
                 preprocess_test_payload = self._check_preprocess()
                 test_payloads.append(preprocess_test_payload)
@@ -176,10 +190,6 @@ class LeapLoader(LeapLoaderBase):
                 general_error = f"Something went wrong. {repr(e.__cause__)} in file {file_name}, line_number:  {line_number}\nStacktrace:\n{stacktrace}"
                 is_valid = False
 
-            del os.environ[mapping_runtime_mode_env_var_mame]
-
-
-
         print_log = stdout_steam.getvalue()
         is_valid_for_model = bool(global_leap_binder.setup_container.custom_layers)
         model_setup = self.get_model_setup_response()
@@ -444,6 +454,16 @@ class LeapLoader(LeapLoaderBase):
     def _get_inputs(self, state: DataStateEnum, sample_id: Union[int, str]) -> Dict[str, npt.NDArray[np.float32]]:
         return self._get_dataset_handlers(global_leap_binder.setup_container.inputs, state, sample_id)
 
+    def _get_masks(self, state: DataStateEnum, sample_id: Union[int, str]) -> Dict[str, List[ElementInstance]]:
+        preprocess_result = self._preprocess_result()
+        preprocess_state = preprocess_result[state]
+        result_agg = {}
+        for handler in global_leap_binder.setup_container.instance_masks:
+            handler_result = handler.function(sample_id, preprocess_state)
+            handler_name = handler.name
+            result_agg[handler_name] = handler_result
+        return result_agg
+
     def _get_gt(self, state: DataStateEnum, sample_id: Union[int, str]) -> Dict[str, npt.NDArray[np.float32]]:
         return self._get_dataset_handlers(global_leap_binder.setup_container.ground_truths, state, sample_id)
 
@@ -512,3 +532,18 @@ class LeapLoader(LeapLoaderBase):
                 raise Exception("Different id types in preprocess results")
 
         return id_type
+
+    def get_instances_data(self, state: DataStateEnum) -> Tuple[Dict[Union[int, str], List[Union[int, str]]], Dict[Union[int, str], Union[int, str]], List[Union[int, str]]]:
+        """
+        This Method get the data state and returns two dictionaries that holds the mapping of the sample ids to their
+         instances and the other way around and the sample ids array.
+        Args:
+            state: DataStateEnum state
+        Returns:
+            sample_ids_to_instance_mappings: sample id to instance mappings
+            instance_to_sample_ids_mappings: instance to sample ids mappings
+            sample_ids: sample ids array
+        """
+        preprocess_result = self._preprocess_result()
+        preprocess_state = preprocess_result[state]
+        return preprocess_state.sample_ids_to_instance_mappings, preprocess_state.instance_to_sample_ids_mappings, preprocess_state.sample_ids

code_loader/leaploaderbase.py

@@ -2,7 +2,7 @@
 
 from abc import abstractmethod
 
-from typing import Dict, List, Union, Type, Optional
+from typing import Dict, List, Union, Type, Optional, Tuple
 
 import numpy as np
 import numpy.typing as npt
@@ -64,6 +64,14 @@ class LeapLoaderBase:
     def get_sample(self, state: DataStateEnum, sample_id: Union[int, str]) -> DatasetSample:
         pass
 
+    @abstractmethod
+    def get_sample_with_masks(self, state: DataStateEnum, sample_id: Union[int, str]) -> DatasetSample:
+        pass
+
+    @abstractmethod
+    def get_instances_data(self, state: DataStateEnum) -> Tuple[Dict[Union[int, str], List[Union[int, str]]], Dict[Union[int, str], Union[int, str]], List[Union[int, str]]]:
+        pass
+
     @abstractmethod
     def check_dataset(self) -> DatasetIntegParseResult:
         pass

code_loader/utils.py

@@ -1,12 +1,13 @@
 import sys
 from pathlib import Path
 from types import TracebackType
-from typing import List, Union, Tuple, Any
+from typing import List, Union, Tuple, Any, Callable
 import traceback
 import numpy as np
 import numpy.typing as npt
 
-from code_loader.contract.datasetclasses import SectionCallableInterface, PreprocessResponse
+from code_loader.contract.datasetclasses import SectionCallableInterface, PreprocessResponse, \
+    InstanceCallableInterface, ElementInstance
 
 
 def to_numpy_return_wrapper(encoder_function: SectionCallableInterface) -> SectionCallableInterface:
@@ -17,6 +18,15 @@ def to_numpy_return_wrapper(encoder_function: SectionCallableInterface) -> Secti
 
     return numpy_encoder_function
 
+def to_numpy_return_masks_wrapper(encoder_function: InstanceCallableInterface) -> Callable[
+    [Union[int, str], PreprocessResponse], List[ElementInstance]]:
+    def numpy_encoder_function(idx: Union[int, str], samples: PreprocessResponse) -> List[ElementInstance]:
+        result = encoder_function(idx, samples)
+        for res in result:
+            res.mask = np.array(res.mask)
+        return result
+    return numpy_encoder_function
+
 
 def get_root_traceback(exc_tb: TracebackType) -> TracebackType:
     return_traceback = exc_tb

{code_loader-1.0.93.dev4.dist-info → code_loader-1.0.94.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: code-loader
-Version: 1.0.93.dev4
+Version: 1.0.94
 Summary: 
 Home-page: https://github.com/tensorleap/code-loader
 License: MIT

{code_loader-1.0.93.dev4.dist-info → code_loader-1.0.94.dist-info}/RECORD

@@ -1,12 +1,12 @@
 LICENSE,sha256=qIwWjdspQeSMTtnFZBC8MuT-95L02FPvzRUdWFxrwJY,1067
 code_loader/__init__.py,sha256=6MMWr0ObOU7hkqQKgOqp4Zp3I28L7joGC9iCbQYtAJg,241
 code_loader/contract/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-code_loader/contract/datasetclasses.py,sha256=sNBHyfdg2uS3rL65kJVZjjNVbSXy0dTQMganldQjGNw,7969
+code_loader/contract/datasetclasses.py,sha256=bNqxut_Ifm0upGRfyTl7j65PysS8xHAmuqTqei_B5Zk,8744
 code_loader/contract/enums.py,sha256=GEFkvUMXnCNt-GOoz7NJ9ecQZ2PPDettJNOsxsiM0wk,1622
 code_loader/contract/exceptions.py,sha256=jWqu5i7t-0IG0jGRsKF4DjJdrsdpJjIYpUkN1F4RiyQ,51
 code_loader/contract/mapping.py,sha256=e11h_sprwOyE32PcqgRq9JvyahQrPzwqgkhmbQLKLQY,1165
 code_loader/contract/responsedataclasses.py,sha256=6-5DJkYBdXb3UB1eNidTTPPBIYxMjEoMdYDkp9VhH8o,4223
-code_loader/contract/visualizer_classes.py,sha256=_nlukRfW8QeQaQG7G5HfAUSeCuoqslB4xJS2AGI_Nz8,15156
+code_loader/contract/visualizer_classes.py,sha256=Wz9eItmoRaKEHa3p0aW0Ypxx4_xUmaZyLBznnTuxwi0,15425
 code_loader/default_losses.py,sha256=NoOQym1106bDN5dcIk56Elr7ZG5quUHArqfP5-Nyxyo,1139
 code_loader/default_metrics.py,sha256=v16Mrt2Ze1tXPgfKywGVdRSrkaK4CKLNQztN1UdVqIY,5010
 code_loader/experiment_api/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -20,14 +20,14 @@ code_loader/experiment_api/types.py,sha256=MY8xFARHwdVA7p4dxyhD60ShmttgTvb4qdp1o
 code_loader/experiment_api/utils.py,sha256=XZHtxge12TS4H4-8PjV3sKuhp8Ud6ojAiIzTZJEqBqc,3304
 code_loader/experiment_api/workingspace_config_utils.py,sha256=DLzXQCg4dgTV_YgaSbeTVzq-2ja_SQw4zi7LXwKL9cY,990
 code_loader/inner_leap_binder/__init__.py,sha256=koOlJyMNYzGbEsoIbXathSmQ-L38N_pEXH_HvL7beXU,99
-code_loader/inner_leap_binder/leapbinder.py,sha256=mRg5ofWNbUkRsIafaz7i7NKi-1USgeAuNTIBxASSMcw,31713
-code_loader/inner_leap_binder/leapbinder_decorators.py,sha256=5QU-_bltYimlvtfESIZRM3pSI18EgEA3nYHlhDDwLgU,30022
-code_loader/leaploader.py,sha256=o8e9p08a6NpN8NNCbMvnnKim5bP53u0JSPyluGdyceU,26725
-code_loader/leaploaderbase.py,sha256=VH0vddRmkqLtcDlYPCO7hfz1_VbKo43lUdHDAbd4iJc,4198
-code_loader/utils.py,sha256=aw2i_fqW_ADjLB66FWZd9DfpCQ7mPdMyauROC5Nd51I,2197
+code_loader/inner_leap_binder/leapbinder.py,sha256=eHnjPfJvYQDQsBM55sf63kI-NC2M-lOB4cwxjYHNTkk,32766
+code_loader/inner_leap_binder/leapbinder_decorators.py,sha256=hfT2mdr6SB90vNu42ZxPjgRWaCFuqAqnwAzgb7cWvJI,28955
+code_loader/leaploader.py,sha256=K532J4Z8YUjyBpTagJPff4PD0dkuwT9szgBbwBiWwwY,28846
+code_loader/leaploaderbase.py,sha256=tpMVEd97675b_var4hvesjN7EgQzoCbPEayNBut6AvI,4551
+code_loader/utils.py,sha256=_j8b60pimoNAvWMRj7hEkkT6C76qES6cZoBFHpXHMxA,2698
 code_loader/visualizers/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 code_loader/visualizers/default_visualizers.py,sha256=669lBpLISLO6my5Qcgn1FLDDeZgHumPf252m4KHY4YM,2555
-code_loader-1.0.93.dev4.dist-info/LICENSE,sha256=qIwWjdspQeSMTtnFZBC8MuT-95L02FPvzRUdWFxrwJY,1067
-code_loader-1.0.93.dev4.dist-info/METADATA,sha256=aYA3pjXg-fUZ_H_RFbDXp-uVrmz6zOWwTCMh0kSUD1Q,854
-code_loader-1.0.93.dev4.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-code_loader-1.0.93.dev4.dist-info/RECORD,,
+code_loader-1.0.94.dist-info/LICENSE,sha256=qIwWjdspQeSMTtnFZBC8MuT-95L02FPvzRUdWFxrwJY,1067
+code_loader-1.0.94.dist-info/METADATA,sha256=l0E_zdPlClM6EIp1kGIu4szoallA_t_hnfyH9qRJz-w,849
+code_loader-1.0.94.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+code_loader-1.0.94.dist-info/RECORD,,