cloudnetpy 1.61.15__py3-none-any.whl → 1.61.16__py3-none-any.whl

cloudnetpy/model_evaluation/products/observation_products.py

@@ -58,7 +58,7 @@ class ObservationManager(DataSource):
             return None
 
     def _generate_product(self) -> None:
-        """Process needed data of observation to a ObservationManager object"""
+        """Process needed data of observation to a ObservationManager object."""
         try:
             if self.obs == "cf":
                 self.append_data(self._generate_cf(), "cf")
@@ -73,7 +73,7 @@ class ObservationManager(DataSource):
             raise
 
     def _generate_cf(self) -> np.ndarray:
-        """Generates cloud fractions using categorize bits and masking conditions"""
+        """Generates cloud fractions using categorize bits and masking conditions."""
         categorize_bits = CategorizeBits(self._file)
         cloud_mask = self._classify_basic_mask(categorize_bits.category_bits)
         return self._mask_cloud_bits(cloud_mask)
@@ -91,7 +91,7 @@ class ObservationManager(DataSource):
 
     @staticmethod
     def _mask_cloud_bits(cloud_mask: np.ndarray) -> np.ndarray:
-        """Creates cloud fraction"""
+        """Creates cloud fraction."""
         for i in [1, 3, 4, 5]:
             cloud_mask[cloud_mask == i] = 1
         for i in [2, 6, 7, 8]:
@@ -99,7 +99,7 @@ class ObservationManager(DataSource):
         return cloud_mask
 
     def _check_rainrate(self) -> bool:
-        """Check if rainrate in file"""
+        """Check if rainrate in file."""
         try:
             self.getvar("rainrate")
         except RuntimeError:
@@ -122,7 +122,7 @@ class ObservationManager(DataSource):
         return rainrate > rainrate_threshold
 
     def _generate_iwc_masks(self) -> None:
-        """Generates ice water content variables with different masks"""
+        """Generates ice water content variables with different masks."""
         # TODO: Differences with CloudnetPy (status=2) and Legacy data (status=3)
         iwc = self.getvar(self.obs)
         iwc_status = self.getvar("iwc_retrieval_status")
@@ -131,21 +131,21 @@ class ObservationManager(DataSource):
         self._mask_iwc(iwc, iwc_status)
 
     def _mask_iwc(self, iwc: np.ndarray, iwc_status: np.ndarray) -> None:
-        """Leaves only reliable data and corrected liquid attenuation"""
+        """Leaves only reliable data and corrected liquid attenuation."""
         iwc_mask = ma.copy(iwc)
         iwc_mask[np.bitwise_and(iwc_status != 1, iwc_status != 2)] = ma.masked
         self.append_data(iwc_mask, "iwc")
 
     def _mask_iwc_att(self, iwc: np.ndarray, iwc_status: np.ndarray) -> None:
         """Leaves only where reliable data, corrected liquid attenuation
-        and uncorrected liquid attenuation
+        and uncorrected liquid attenuation.
         """
         iwc_att = ma.copy(iwc)
         iwc_att[iwc_status > 3] = ma.masked
         self.append_data(iwc_att, "iwc_att")
 
     def _get_rain_iwc(self, iwc_status: np.ndarray) -> None:
-        """Finds columns where is rain, return boolean of x-axis shape"""
+        """Finds columns where is rain, return boolean of x-axis shape."""
         iwc_rain = np.zeros(iwc_status.shape, dtype=bool)
         iwc_rain[iwc_status == 5] = 1
         iwc_rain = np.any(iwc_rain, axis=1)

cloudnetpy/model_evaluation/products/tools.py

@@ -10,7 +10,7 @@ from cloudnetpy.model_evaluation.products.observation_products import Observatio
 
 
 def check_model_file_list(name: str, models: list) -> None:
-    """Check that files in models are from same model and date"""
+    """Check that files in models are from same model and date."""
     for m in models:
         if name not in m:
             logging.error("Invalid model file set")
@@ -35,16 +35,14 @@ def calculate_advection_time(
     wind: ma.MaskedArray,
     sampling: int,
 ) -> np.ndarray:
-    """Calculates time which variable takes to go through the time window
+    """Calculates time which variable takes to go through the time window.
 
-    Notes
+    Notes:
         Wind speed is stronger in upper levels, so advection time is more
         there then lower levels. Effect is small in a mid-latitudes,
         but visible in a tropics.
 
         sampling = 1 -> hour, sampling 1/6 -> 10min
-
-    References
     """
     t_adv = resolution * 1000 / wind / 60**2
     t_adv[t_adv.mask] = 0
@@ -76,7 +74,7 @@ def get_adv_indices(
 
 
 def get_obs_window_size(ind_x: np.ndarray, ind_y: np.ndarray) -> tuple | None:
-    """Returns shape (tuple) of window area, where values are True"""
+    """Returns shape (tuple) of window area, where values are True."""
     x = np.where(ind_x)[0]
     y = np.where(ind_y)[0]
     if np.any(x) and np.any(y):
@@ -90,5 +88,5 @@ def add_date(model_obj: ModelManager, obs_obj: ObservationManager) -> None:
 
 
 def average_column_sum(data: np.ndarray) -> np.ndarray:
-    """Returns average sum of columns which have any data"""
+    """Returns average sum of columns which have any data."""
     return np.nanmean(np.nansum(data, 1) > 0)

cloudnetpy/model_evaluation/statistics/statistical_methods.py

@@ -9,7 +9,7 @@ sys.path.append(os.path.dirname(os.path.abspath(__file__)))
 
 
 class DayStatistics:
-    """Class for calculating statistical analysis of day scale products
+    """Class for calculating statistical analysis of day scale products.
 
     Class generates one statistical method at the time with given model data
     and observation data of wanted product.
@@ -107,7 +107,7 @@ def combine_masked_indices(
     model: ma.MaskedArray,
     observation: ma.MaskedArray,
 ) -> tuple[ma.MaskedArray, ma.MaskedArray]:
-    """Connects two array masked indices to one and add in two array same mask"""
+    """Connects two array masked indices to one and add in two array same mask."""
     observation[np.where(np.isnan(observation))] = ma.masked
     model[model < np.min(observation)] = ma.masked
     combine_mask = model.mask + observation.mask

cloudnetpy/output.py

@@ -1,4 +1,5 @@
 """Functions for file writing."""
+
 import datetime
 import logging
 from os import PathLike
@@ -140,10 +141,11 @@ def get_l1b_title(instrument: Instrument, location: str) -> str:
 
 
 def get_references(identifier: str | None = None, extra: list | None = None) -> str:
-    """ "Returns references.
+    """Returns references.
 
     Args:
         identifier: Cloudnet file type, e.g., 'iwc'.
+        extra: List of additional references to include
 
     """
     references = "https://doi.org/10.21105/joss.02123"

cloudnetpy/plotting/plot_meta.py

@@ -1,11 +1,11 @@
 """Metadata for plotting module."""
+
 from collections.abc import Sequence
 from typing import NamedTuple
 
 
 class PlotMeta(NamedTuple):
-    """
-    A class representing the metadata for plotting.
+    """A class representing the metadata for plotting.
 
     Attributes:
         cmap: The colormap to be used for the plot.

cloudnetpy/plotting/plotting.py

@@ -1,4 +1,5 @@
 """Misc. plotting routines for Cloudnet products."""
+
 import os.path
 import re
 import textwrap
@@ -27,8 +28,7 @@ from cloudnetpy.plotting.plot_meta import ATTRIBUTES, PlotMeta
 
 @dataclass
 class PlotParameters:
-    """
-    Class representing the parameters for plotting.
+    """Class representing the parameters for plotting.
 
     Attributes:
         dpi: The resolution of the plot in dots per inch.
@@ -57,9 +57,8 @@ class PlotParameters:
 
 
 class Dimensions:
-    """
-    Dimensions of a generated figure in pixels. Elements such as the figure
-    title, labels, colorbar and legend are exluded from the margins.
+    """Dimensions of a generated figure in pixels. Elements such as the figure
+    title, labels, colorbar and legend are excluded from the margins.
 
     Attributes:
         width (int): Figure width in pixels.
@@ -121,9 +120,8 @@ class FigureData:
             sharex=True,
         )
         fig.subplots_adjust(left=0.06, right=0.73)
-        if n_subplots == 1:
-            axes = [axes]
-        return fig, axes
+        axes_list = [axes] if isinstance(axes, Axes) else axes.tolist()
+        return fig, axes_list
 
     def add_subtitle(self, fig: Figure) -> None:
         fig.suptitle(
@@ -309,7 +307,7 @@ class Plot:
             "air_pressure": (multiply, 0.01, "hPa"),
             "relative_humidity": (multiply, 100, "%"),
             "rainfall_amount": (multiply, 1000, "mm"),
-            "air_temperature": (add, -273.15, "\u00B0C"),
+            "air_temperature": (add, -273.15, "\u00b0C"),
         }
         conversion_method, conversion, units = units_conversion.get(
             self.sub_plot.variable.name, (multiply, 1, None)
@@ -756,8 +754,7 @@ def generate_figure(
     output_filename: os.PathLike | str | None = None,
     options: PlotParameters | None = None,
 ) -> Dimensions:
-    """
-    Generate a figure based on the given filename and variables.
+    """Generate a figure based on the given filename and variables.
 
     Args:
         filename: The path to the input file.

cloudnetpy/products/classification.py

@@ -1,4 +1,5 @@
 """Module for creating classification file."""
+
 import numpy as np
 from numpy import ma
 
@@ -70,20 +71,20 @@ def _get_target_classification(
     classification = ma.zeros(bits["cold"].shape, dtype=int)
     classification[bits["droplet"] & ~bits["falling"]] = 1  # Cloud droplets
     classification[~bits["droplet"] & bits["falling"]] = 2  # Drizzle or rain
-    classification[
-        bits["droplet"] & bits["falling"]
-    ] = 3  # Drizzle or rain and droplets
+    classification[bits["droplet"] & bits["falling"]] = (
+        3  # Drizzle or rain and droplets
+    )
     classification[~bits["droplet"] & bits["falling"] & bits["cold"]] = 4  # ice
-    classification[
-        bits["droplet"] & bits["falling"] & bits["cold"]
-    ] = 5  # ice + supercooled
+    classification[bits["droplet"] & bits["falling"] & bits["cold"]] = (
+        5  # ice + supercooled
+    )
     classification[bits["melting"]] = 6  # melting layer
     classification[bits["melting"] & bits["droplet"]] = 7  # melting + droplets
     classification[bits["aerosol"]] = 8  # aerosols
     classification[bits["insect"] & ~clutter] = 9  # insects
-    classification[
-        bits["aerosol"] & bits["insect"] & ~clutter
-    ] = 10  # insects + aerosols
+    classification[bits["aerosol"] & bits["insect"] & ~clutter] = (
+        10  # insects + aerosols
+    )
     classification[clutter & ~bits["aerosol"]] = 0
     return classification
 

cloudnetpy/products/der.py

@@ -1,6 +1,7 @@
 """Module for creating Cloudnet droplet effective radius
 using the Frisch et al. 2002 method.
 """
+
 from typing import NamedTuple
 
 import numpy as np
@@ -33,7 +34,7 @@ def generate_der(
     parameters: Parameters | None = None,
 ) -> str:
     """Generates Cloudnet effective radius of liquid water droplets
-        product acording to Frisch et al. 2002.
+        product according to Frisch et al. 2002.
 
     This function calculates liquid droplet effective radius def
     using the Frisch method. In this method, def is calculated
@@ -44,7 +45,7 @@ def generate_der(
         categorize_file: Categorize file name.
         output_file: Output file name.
         uuid: Set specific UUID for the file.
-        parameters: Tuple of specific fixed paramaters
+        parameters: Tuple of specific fixed parameters
             (ddBZ, N, dN, sigma_x, dsigma_x, dQ)
         used in Frisch approach.
 

cloudnetpy/products/drizzle.py

@@ -1,5 +1,5 @@
-"""Module for creating Cloudnet drizzle product.
-"""
+"""Module for creating Cloudnet drizzle product."""
+
 import numpy as np
 from numpy import ma
 from scipy.special import gamma
@@ -113,7 +113,7 @@ class DrizzleProducts:
         return np.divide(a, b, out=np.zeros_like(a), where=b != 0)
 
     def _calc_lwc(self) -> np.ndarray:
-        """Calculates drizzle liquid water content (kg m-3)"""
+        """Calculates drizzle liquid water content (kg m-3)."""
         rho_water = 1000
         dia, mu, s = (self._params.get(key) for key in ("Do", "mu", "S"))
         dia = ma.array(dia)

cloudnetpy/products/drizzle_tools.py

@@ -185,7 +185,7 @@ class SpectralWidth:
     def _calc_horizontal_wind(self) -> np.ndarray:
         """Calculates magnitude of horizontal wind.
 
-        Returns
+        Returns:
             ndarray: Horizontal wind (m s-1).
 
         """

cloudnetpy/products/ier.py

@@ -1,4 +1,5 @@
 """Module for creating Cloudnet ice effective radius file using Z-T method."""
+
 import numpy as np
 from numpy import ma
 

cloudnetpy/products/iwc.py

@@ -1,4 +1,5 @@
 """Module for creating Cloudnet ice water content file using Z-T method."""
+
 import numpy as np
 from numpy import ma
 
@@ -91,9 +92,9 @@ class IwcSource(IceSource):
             retrieval_uncertainty,
             error_uncorrected,
         )
-        iwc_error[
-            (~ice_classification.is_ice | ice_classification.ice_above_rain)
-        ] = ma.masked
+        iwc_error[(~ice_classification.is_ice | ice_classification.ice_above_rain)] = (
+            ma.masked
+        )
         self.append_data(iwc_error, f"{self.product}_error")
         return lwp_prior, retrieval_uncertainty
 

cloudnetpy/products/lwc.py

@@ -1,6 +1,7 @@
 """Module for creating Cloudnet liquid water content file using scaled-adiabatic
 method.
 """
+
 import numpy as np
 from numpy import ma
 
@@ -228,9 +229,7 @@ class CloudAdjustor:
 
     def _has_converged(self, ind: int) -> bool:
         lwc_sum = ma.sum(self.lwc_adiabatic[ind, :])
-        if lwc_sum * self.lwc_source.dheight > self.lwc_source.lwp[ind]:
-            return True
-        return False
+        return lwc_sum * self.lwc_source.dheight > self.lwc_source.lwp[ind]
 
     def _out_of_bound(self, ind: int) -> bool:
         return ind >= self.lwc.shape[1] - 1

cloudnetpy/products/mwr_tools.py

@@ -15,8 +15,7 @@ from cloudnetpy.products import product_tools
 def generate_mwr_single(
     mwr_l1c_file: str, output_file: str, uuid: str | None = None
 ) -> str:
-    """
-    Generates MWR single-pointing product including liquid water path, integrated
+    """Generates MWR single-pointing product including liquid water path, integrated
     water vapor, etc. from zenith measurements.
 
     Args:
@@ -36,8 +35,7 @@ def generate_mwr_single(
 def generate_mwr_multi(
     mwr_l1c_file: str, output_file: str, uuid: str | None = None
 ) -> str:
-    """
-    Generates MWR multiple-pointing product, including relative humidity profiles,
+    """Generates MWR multiple-pointing product, including relative humidity profiles,
     etc. from scanning measurements.
 
     Args:

cloudnetpy/products/product_tools.py

@@ -1,4 +1,5 @@
 """General helper classes and functions for all products."""
+
 import os
 from typing import NamedTuple
 
@@ -185,7 +186,7 @@ class IceSource(DataSource):
     def _get_coefficients(self) -> IceCoefficients:
         """Returns coefficients for ice effective radius retrieval.
 
-        References
+        References:
             Hogan et.al. 2006, https://doi.org/10.1175/JAM2340.1
         """
         if self.product == "ier":

cloudnetpy/utils.py

@@ -1,4 +1,5 @@
 """This module contains general helper functions."""
+
 import datetime
 import logging
 import os
@@ -75,7 +76,7 @@ def seconds2date(time_in_seconds: float, epoch: Epoch = (2001, 1, 1)) -> list:
     epoch_in_seconds = datetime.datetime.timestamp(
         datetime.datetime(*epoch, tzinfo=timezone.utc),
     )
-    timestamp = time_in_seconds + epoch_in_seconds
+    timestamp = float(time_in_seconds) + epoch_in_seconds
     return (
         datetime.datetime.fromtimestamp(timestamp, tz=datetime.timezone.utc)
         .strftime("%Y %m %d %H %M %S")
@@ -84,7 +85,7 @@ def seconds2date(time_in_seconds: float, epoch: Epoch = (2001, 1, 1)) -> list:
 
 
 def datetime2decimal_hours(data: np.ndarray | list) -> np.ndarray:
-    """Converts array of datetime to decimal_hours"""
+    """Converts array of datetime to decimal_hours."""
     output = []
     for timestamp in data:
         t = timestamp.time()
@@ -153,13 +154,10 @@ def rebin_2d(
         statistic: Statistic to be calculated. Possible statistics are 'mean', 'std'.
             Default is 'mean'.
         n_min: Minimum number of points to have good statistics in a bin. Default is 1.
+        mask_zeros: Whether to mask 0 values in the returned array. Default is True.
 
     Returns:
         tuple: Rebinned data with shape (N, m) and indices of bins without enough data.
-
-    Notes:
-        0-values are masked in the returned array.
-
     """
     edges = binvec(x_new)
     result = np.zeros((len(x_new), array.shape[1]))
@@ -208,6 +206,7 @@ def rebin_1d(
         x_new: 1-D target vector (center points) with shape (N,).
         statistic: Statistic to be calculated. Possible statistics are 'mean', 'std'.
             Default is 'mean'.
+        mask_zeros: Whether to mask 0 values in the returned array. Default is True.
 
     Returns:
         Re-binned data with shape (N,).
@@ -656,7 +655,7 @@ def isscalar(array: np.ndarray | float | list) -> bool:
 
     By "scalar" we mean that array has a single value.
 
-    Examples
+    Examples:
         >>> isscalar(1)
             True
         >>> isscalar([1])
@@ -787,17 +786,13 @@ def range_to_height(range_los: np.ndarray, tilt_angle: float) -> np.ndarray:
 
 def is_empty_line(line: str) -> bool:
     """Tests if a line (of a text file) is empty."""
-    if line in ("\n", "\r\n"):
-        return True
-    return False
+    return line in ("\n", "\r\n")
 
 
 def is_timestamp(timestamp: str) -> bool:
-    """Tests if the input string is formatted as -yyyy-mm-dd hh:mm:ss"""
+    """Tests if the input string is formatted as -yyyy-mm-dd hh:mm:ss."""
     reg_exp = re.compile(r"-\d{4}-\d{2}-\d{2} \d{2}:\d{2}:\d{2}")
-    if reg_exp.match(timestamp) is not None:
-        return True
-    return False
+    return reg_exp.match(timestamp) is not None
 
 
 def get_sorted_filenames(file_path: str, extension: str) -> list:

cloudnetpy/version.py

@@ -1,4 +1,4 @@
 MAJOR = 1
 MINOR = 61
-PATCH = 15
+PATCH = 16
 __version__ = f"{MAJOR}.{MINOR}.{PATCH}"

{cloudnetpy-1.61.15.dist-info → cloudnetpy-1.61.16.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: cloudnetpy
-Version: 1.61.15
+Version: 1.61.16
 Summary: Python package for Cloudnet processing
 Author: Simo Tukiainen
 License: MIT License

cloudnetpy-1.61.16.dist-info/RECORD

@@ -0,0 +1,115 @@
+cloudnetpy/__init__.py,sha256=X_FqY-4yg5GUj5Edo14SToLEos6JIsC3fN-v1FUgQoA,43
+cloudnetpy/cloudnetarray.py,sha256=Ol1ha4RPAmFZANL__U5CaMKX4oYMXYR6OnjoCZ9w3eo,7077
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+cloudnetpy/datasource.py,sha256=j7N4g59HPvOBWle-W9bOUF0BfRLgvR4zwOi_B50cI7Q,7921
+cloudnetpy/exceptions.py,sha256=wrI0bZTwmS5C_cqOmvlJ8XJSEFyzuD1eD4voGJc_Gjg,1584
+cloudnetpy/metadata.py,sha256=v_VDo2vbdTxB0zIsfP69IcrwSKiRlLpsGdq6JPI4CoA,5306
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+cloudnetpy/version.py,sha256=GO9xFdIg8VR1hdOJ3fERTqkbnoe6P85YNUOxd1OjCq4,73
+cloudnetpy/categorize/__init__.py,sha256=gP5q3Vis1y9u9OWgA_idlbjfWXYN_S0IBSWdwBhL_uU,69
+cloudnetpy/categorize/atmos.py,sha256=G4DmEJCt1FAPYyt7oXzBH47JTeb5lUOGDakkviOXblE,12390
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+cloudnetpy/categorize/categorize.py,sha256=aoIxbBEwUFO-Xx_oofKM68aL0KEJuGi3OaWMKCCuUK8,17827
+cloudnetpy/categorize/classify.py,sha256=l8XoO42GJysio5ODX6qoxWHD9RqtMyz_-T8ZOpOkMxU,9219
+cloudnetpy/categorize/containers.py,sha256=aL_55tTDYjICS_TnG1u0FwBeXDS0S4mfDMU0kY_DUbs,4312
+cloudnetpy/categorize/disdrometer.py,sha256=keU3pFvKtk840A0oLwAyNDuqOCswBPJEKf2bV0YWyA8,2004
+cloudnetpy/categorize/droplet.py,sha256=894VHdL9ScaB8f1oxXwM2la4ShXd-uWywQDINoaoiD8,8687
+cloudnetpy/categorize/falling.py,sha256=aI09_6H24x34lYr3vnKIgjWB0wzTkxOA6wE-gkdf6bs,4386
+cloudnetpy/categorize/freezing.py,sha256=c4k5AIgfBpvw64EaVVVYPi2Fx4SpHk1cyfceE1ydD28,3755
+cloudnetpy/categorize/insects.py,sha256=0pHJ-T-j3G9dbDU82xe8gsnVRyww3-ljdZ1SMAP9UKQ,5765
+cloudnetpy/categorize/lidar.py,sha256=YQrM_LOz8NQrrD9l9HyujV1GSGwkQ8LMqXN13bEJRW4,2605
+cloudnetpy/categorize/melting.py,sha256=mYdOKxfTC2InB8NdOPwr_7NpbouQMm-9f2Q1kfTqIJE,6262
+cloudnetpy/categorize/model.py,sha256=hSmE-3hCzbpA26AcMtSeDUVlLHvtmODy_37b2kJO2eA,5536
+cloudnetpy/categorize/mwr.py,sha256=rTyVYaMotXl7LRgRQBBcrLInsrWGl4sFdZ4pyM4jXMc,1436
+cloudnetpy/categorize/radar.py,sha256=C4R74E_jmLOJqXLrfhdrAitHRHHA79UYuChz9VLxy58,13722
+cloudnetpy/instruments/__init__.py,sha256=_jejVwi_viSZehmAOkEqTNI-0-exGgAJ_bHW1IRRwTI,398
+cloudnetpy/instruments/basta.py,sha256=_OTnySd36ktvxk_swWBzbv_H4AVGlkF_Ce3KtPGD1rE,3758
+cloudnetpy/instruments/campbell_scientific.py,sha256=2WHfBKQjtRSl0AqvtPeX7G8Hdi3Dn0WbvoAppFOMbA8,5270
+cloudnetpy/instruments/ceilo.py,sha256=-QZNgdTiFmz0G57CU_gZ1cQtYzppgkFJqjndfleefH0,8924
+cloudnetpy/instruments/ceilometer.py,sha256=-aPEZs_r0Gxeu53PHeWAkZMB2BUdauS47tkL7RFxo6k,12078
+cloudnetpy/instruments/cl61d.py,sha256=g6DNBFju3wYhLFl32DKmC8pUup7y-EupXoUU0fuoGGA,1990
+cloudnetpy/instruments/cloudnet_instrument.py,sha256=RG5HJxGM6p0F-IGyr85fvOizcMmgx48OeD_XeIsrgSU,3367
+cloudnetpy/instruments/copernicus.py,sha256=nmgqGOjVQFngj7BNbpcuCwA-W3yksvBbqn__iq7MyDk,6469
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