clinicedc 2.0.6__py3-none-any.whl → 2.0.8__py3-none-any.whl

edc_listboard/migrations/0007_alter_listboard_device_created_and_more.py

@@ -0,0 +1,49 @@
+# Generated by Django 5.2.6 on 2025-09-17 16:53
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("edc_listboard", "0006_alter_listboard_revision"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="listboard",
+            name="device_created",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device created"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="listboard",
+            name="device_modified",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device modified"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="listboard",
+            name="locale_created",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale created",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="listboard",
+            name="locale_modified",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale modified",
+            ),
+        ),
+    ]

edc_locator/auths.py

@@ -1,17 +1,22 @@
 from edc_auth.constants import PII, PII_VIEW
 from edc_auth.site_auths import site_auths
 
-site_auths.update_group(
-    "edc_locator.add_subjectlocator",
-    "edc_locator.change_subjectlocator",
-    "edc_locator.view_historicalsubjectlocator",
-    "edc_locator.view_subjectlocator",
-    name=PII,
-)
 
-site_auths.update_group(
-    "edc_locator.view_historicalsubjectlocator",
-    "edc_locator.view_subjectlocator",
-    name=PII_VIEW,
-)
-site_auths.add_pii_model("edc_locator.subjectlocator")
+def update_site_auths():
+    site_auths.update_group(
+        "edc_locator.add_subjectlocator",
+        "edc_locator.change_subjectlocator",
+        "edc_locator.view_historicalsubjectlocator",
+        "edc_locator.view_subjectlocator",
+        name=PII,
+    )
+
+    site_auths.update_group(
+        "edc_locator.view_historicalsubjectlocator",
+        "edc_locator.view_subjectlocator",
+        name=PII_VIEW,
+    )
+    site_auths.add_pii_model("edc_locator.subjectlocator")
+
+
+update_site_auths()

edc_locator/migrations/0001_initial.py

@@ -14,7 +14,7 @@ from django.db import migrations, models
 import edc_model.validators.phone
 import edc_model_fields.fields.hostname_modification_field
 import edc_model_fields.fields.userfield
-import edc_utils
+import django.utils.timezone
 
 
 class Migration(migrations.Migration):
@@ -31,11 +31,11 @@ class Migration(migrations.Migration):
             fields=[
                 (
                     "created",
-                    models.DateTimeField(blank=True, default=edc_utils.date.get_utcnow),
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
                 ),
                 (
                     "modified",
-                    models.DateTimeField(blank=True, default=edc_utils.date.get_utcnow),
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
                 ),
                 (
                     "user_created",
@@ -293,7 +293,7 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "report_datetime",
-                    models.DateTimeField(default=edc_utils.date.get_utcnow),
+                    models.DateTimeField(default=django.utils.timezone.now),
                 ),
                 ("history_date", models.DateTimeField()),
                 ("history_change_reason", models.CharField(max_length=100, null=True)),
@@ -342,11 +342,11 @@ class Migration(migrations.Migration):
             fields=[
                 (
                     "created",
-                    models.DateTimeField(blank=True, default=edc_utils.date.get_utcnow),
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
                 ),
                 (
                     "modified",
-                    models.DateTimeField(blank=True, default=edc_utils.date.get_utcnow),
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
                 ),
                 (
                     "user_created",
@@ -605,7 +605,7 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "report_datetime",
-                    models.DateTimeField(default=edc_utils.date.get_utcnow),
+                    models.DateTimeField(default=django.utils.timezone.now),
                 ),
                 (
                     "site",

edc_locator/migrations/0018_auto_20190305_0123.py

@@ -4,6 +4,7 @@ import django_audit_fields.fields.hostname_modification_field
 import django_audit_fields.fields.userfield
 import django_audit_fields.models.audit_model_mixin
 from django.db import migrations, models
+import django.utils.timezone
 
 
 class Migration(migrations.Migration):
@@ -13,9 +14,7 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="historicalsubjectlocator",
             name="created",
-            field=models.DateTimeField(
-                blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
-            ),
+            field=models.DateTimeField(blank=True, default=django.utils.timezone.now),
         ),
         migrations.AlterField(
             model_name="historicalsubjectlocator",
@@ -29,9 +28,7 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="historicalsubjectlocator",
             name="modified",
-            field=models.DateTimeField(
-                blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
-            ),
+            field=models.DateTimeField(blank=True, default=django.utils.timezone.now),
         ),
         migrations.AlterField(
             model_name="historicalsubjectlocator",
@@ -56,9 +53,7 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="subjectlocator",
             name="created",
-            field=models.DateTimeField(
-                blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
-            ),
+            field=models.DateTimeField(blank=True, default=django.utils.timezone.now),
         ),
         migrations.AlterField(
             model_name="subjectlocator",
@@ -72,9 +67,7 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="subjectlocator",
             name="modified",
-            field=models.DateTimeField(
-                blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
-            ),
+            field=models.DateTimeField(blank=True, default=django.utils.timezone.now),
         ),
         migrations.AlterField(
             model_name="subjectlocator",

edc_locator/migrations/0040_alter_historicalsubjectlocator_action_identifier_and_more.py

@@ -0,0 +1,187 @@
+# Generated by Django 5.2.6 on 2025-09-17 16:53
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("edc_locator", "0039_alter_historicalsubjectlocator_revision_and_more"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="historicalsubjectlocator",
+            name="action_identifier",
+            field=models.CharField(
+                blank=True, db_index=True, default="", max_length=50
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectlocator",
+            name="action_item_reason",
+            field=models.TextField(default="", editable=False),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectlocator",
+            name="consent_model",
+            field=models.CharField(blank=True, default="", max_length=50),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectlocator",
+            name="consent_version",
+            field=models.CharField(blank=True, default="", max_length=10),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectlocator",
+            name="device_created",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device created"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectlocator",
+            name="device_modified",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device modified"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectlocator",
+            name="locale_created",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale created",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectlocator",
+            name="locale_modified",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale modified",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectlocator",
+            name="may_sms",
+            field=models.CharField(
+                choices=[("Yes", "Yes"), ("No", "No")],
+                default="",
+                max_length=25,
+                verbose_name="Has the participant given permission <b>to be contacted by SMS</b> by study staff for follow-up purposes during the study?",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectlocator",
+            name="parent_action_identifier",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="action identifier that links to parent reference model instance.",
+                max_length=30,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectlocator",
+            name="related_action_identifier",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="action identifier that links to related reference model instance.",
+                max_length=30,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="subjectlocator",
+            name="action_identifier",
+            field=models.CharField(blank=True, default="", max_length=50, unique=True),
+        ),
+        migrations.AlterField(
+            model_name="subjectlocator",
+            name="action_item_reason",
+            field=models.TextField(default="", editable=False),
+        ),
+        migrations.AlterField(
+            model_name="subjectlocator",
+            name="consent_model",
+            field=models.CharField(blank=True, default="", max_length=50),
+        ),
+        migrations.AlterField(
+            model_name="subjectlocator",
+            name="consent_version",
+            field=models.CharField(blank=True, default="", max_length=10),
+        ),
+        migrations.AlterField(
+            model_name="subjectlocator",
+            name="device_created",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device created"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="subjectlocator",
+            name="device_modified",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device modified"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="subjectlocator",
+            name="locale_created",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale created",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="subjectlocator",
+            name="locale_modified",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale modified",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="subjectlocator",
+            name="may_sms",
+            field=models.CharField(
+                choices=[("Yes", "Yes"), ("No", "No")],
+                default="",
+                max_length=25,
+                verbose_name="Has the participant given permission <b>to be contacted by SMS</b> by study staff for follow-up purposes during the study?",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="subjectlocator",
+            name="parent_action_identifier",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="action identifier that links to parent reference model instance.",
+                max_length=30,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="subjectlocator",
+            name="related_action_identifier",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="action identifier that links to related reference model instance.",
+                max_length=30,
+            ),
+        ),
+    ]

edc_locator/migrations/0041_alter_historicalsubjectlocator_report_datetime_and_more.py

@@ -0,0 +1,27 @@
+# Generated by Django 5.2.6 on 2025-09-18 00:24
+
+import django.utils.timezone
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        (
+            "edc_locator",
+            "0040_alter_historicalsubjectlocator_action_identifier_and_more",
+        ),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="historicalsubjectlocator",
+            name="report_datetime",
+            field=models.DateTimeField(default=django.utils.timezone.now),
+        ),
+        migrations.AlterField(
+            model_name="subjectlocator",
+            name="report_datetime",
+            field=models.DateTimeField(default=django.utils.timezone.now),
+        ),
+    ]

edc_locator/model_mixins/locator_model_mixin.py

@@ -1,7 +1,7 @@
+import django.utils.timezone
 from django.db import models
 
 from edc_identifier.model_mixins import UniqueSubjectIdentifierFieldMixin
-from edc_utils import get_utcnow
 
 from .locator_methods_model_mixin import LocatorMethodsModelMixin
 from .subject_contact_fields_mixin import SubjectContactFieldsMixin
@@ -30,7 +30,7 @@ class LocatorModelMixin(
     This model is used in ListboardViews.
     """
 
-    report_datetime = models.DateTimeField(default=get_utcnow)
+    report_datetime = models.DateTimeField(default=django.utils.timezone.now)
 
     objects = LocatorManager()
 

edc_locator/model_mixins/subject_contact_fields_mixin.py

@@ -30,7 +30,7 @@ class SubjectContactFieldsMixin(models.Model):
     may_sms = models.CharField(
         max_length=25,
         choices=YES_NO,
-        null=True,
+        default="",
         blank=False,
         verbose_name=format_html(
             "Has the participant given permission <b>{text}</b> "

edc_locator/modeladmin_mixins.py

@@ -1,12 +1,13 @@
 from django.contrib import admin
 from django.template.loader import render_to_string
+from django.utils import timezone
 from django_audit_fields.admin import audit_fieldset_tuple
 
 from edc_consent import site_consents
 from edc_constants.constants import NO, YES
 from edc_model_admin.mixins import ModelAdminProtectPiiMixin
 from edc_sites import site_sites
-from edc_utils import age, get_utcnow
+from edc_utils.age import age
 
 from .fieldsets import (
     indirect_contacts_fieldset,
@@ -19,7 +20,7 @@ from .forms import SubjectLocatorForm
 class SubjectLocatorModelAdminMixin(ModelAdminProtectPiiMixin):
     form = SubjectLocatorForm
 
-    extra_pii_attrs: list[str] = ["contacts"]
+    extra_pii_attrs: list[str] = ("contacts",)
 
     fieldsets = (
         (None, {"fields": ("subject_identifier",)}),
@@ -29,7 +30,7 @@ class SubjectLocatorModelAdminMixin(ModelAdminProtectPiiMixin):
         audit_fieldset_tuple,
     )
 
-    radio_fields = {
+    radio_fields = {  # noqa: RUF012
         "may_visit_home": admin.VERTICAL,
         "may_call": admin.VERTICAL,
         "may_sms": admin.VERTICAL,
@@ -74,7 +75,7 @@ class SubjectLocatorModelAdminMixin(ModelAdminProtectPiiMixin):
         context = dict(
             subject_identifier=obj.subject_identifier,
             gender=consent.gender.upper(),
-            age_in_years=age(born=consent.dob, reference_dt=get_utcnow()).years,
+            age_in_years=age(born=consent.dob, reference_dt=timezone.now()).years,
             initials=consent.initials,
         )
         return render_to_string("edc_locator/changelist_locator_subject.html", context=context)

edc_ltfu/model_mixins.py

@@ -1,10 +1,10 @@
 from django.core.validators import MinValueValidator
 from django.db import models
+from django.utils import timezone
 
 from edc_constants.choices import YES_NO
 from edc_model import models as edc_models
 from edc_protocol.validators import date_not_before_study_start
-from edc_utils.date import get_utcnow
 
 from .choices import LTFU_CHOICES
 
@@ -12,7 +12,7 @@ from .choices import LTFU_CHOICES
 class LtfuModelMixin(models.Model):
     report_datetime = models.DateTimeField(
         verbose_name="Report Date and Time",
-        default=get_utcnow,
+        default=timezone.now,
         validators=[date_not_before_study_start],
     )
 
@@ -33,7 +33,7 @@ class LtfuModelMixin(models.Model):
 
     ltfu_date = models.DateField(
         verbose_name="Date participant considered lost to follow up",
-        default=get_utcnow,
+        default=timezone.now,
         null=True,
         blank=False,
     )
@@ -42,12 +42,12 @@ class LtfuModelMixin(models.Model):
         verbose_name="Was contact by phone attempted",
         max_length=15,
         choices=YES_NO,
-        null=True,
+        default="",
         blank=False,
     )
     phone_attempts = models.IntegerField(
         verbose_name=(
-            "If YES, how many attempts were made to contact the participant by phone",
+            "If YES, how many attempts were made to contact the participant by phone"
         ),
         validators=[MinValueValidator(0)],
         default=0,
@@ -60,6 +60,7 @@ class LtfuModelMixin(models.Model):
     home_visit_detail = models.TextField(
         verbose_name="If YES, provide any further details of the home visit",
         blank=True,
+        default="",
     )
 
     ltfu_category = models.CharField(
@@ -76,6 +77,7 @@ class LtfuModelMixin(models.Model):
             "circumstances that led to this decision."
         ),
         blank=True,
+        default="",
     )
 
     class Meta:

edc_metadata/auths.py

@@ -1,12 +1,16 @@
 from django.apps import apps as django_apps
 
 from edc_auth.site_auths import site_auths
+from edc_export.constants import EXPORT
 
-if django_apps.is_installed("edc_export"):
-    from edc_export.constants import EXPORT
 
-    site_auths.update_group(
-        "edc_metadata.export_crfmetadata",
-        "edc_metadata.export_requisitionmetadata",
-        name=EXPORT,
-    )
+def update_site_auths():
+    if django_apps.is_installed("edc_export"):
+        site_auths.update_group(
+            "edc_metadata.export_crfmetadata",
+            "edc_metadata.export_requisitionmetadata",
+            name=EXPORT,
+        )
+
+
+update_site_auths()

edc_metadata/metadata/metadata.py

@@ -110,7 +110,7 @@ class CrfCreator(SourceModelMetadataMixin):
                             metadata_obj = self.metadata_model_cls.objects.create(**opts)
                         except IntegrityError as e:
                             msg = f"Integrity error creating. Tried with {opts}. Got {e}."
-                            raise CreatesMetadataError(msg)
+                            raise CreatesMetadataError(msg) from e
             else:
                 if not registered:
                     metadata_obj.delete()

edc_metadata/metadata_rules/crf/crf_rule.py

@@ -14,7 +14,7 @@ if TYPE_CHECKING:
         pass
 
 
-class CrfRuleModelConflict(Exception):
+class CrfRuleModelConflict(Exception):  # noqa: N818
     pass
 
 

edc_metadata/metadata_rules/decorators.py

@@ -9,7 +9,7 @@ class RegisterRuleGroupError(Exception):
     pass
 
 
-def register(site=None, **kwargs) -> Any:  # noqa
+def register(site=None, **kwargs) -> Any:
     """Registers a rule group."""
     site = site or site_metadata_rules
 

edc_metadata/metadata_rules/metadata_rule_evaluator.py

@@ -29,9 +29,11 @@ class MetadataRuleEvaluator:
         if not self.app_labels:
             for rule_groups in site_metadata_rules.registry.values():
                 for rule_group in rule_groups:
-                    if rule_group._meta.related_visit_model == self.related_visit_model:
-                        if rule_group._meta.app_label not in self.app_labels:
-                            self.app_labels.append(rule_group._meta.app_label)
+                    if (
+                        rule_group._meta.related_visit_model == self.related_visit_model
+                        and rule_group._meta.app_label not in self.app_labels
+                    ):
+                        self.app_labels.append(rule_group._meta.app_label)
 
     def evaluate_rules(self) -> None:
         for app_label in self.app_labels:

edc_metadata/metadata_rules/rule.py

@@ -1,5 +1,6 @@
 from __future__ import annotations
 
+import contextlib
 from typing import TYPE_CHECKING
 
 from edc_appointment.constants import MISSED_APPT
@@ -91,8 +92,6 @@ class Rule:
         try:
             field_names = [self.predicate.attr]
         except AttributeError:
-            try:
+            with contextlib.suppress(AttributeError):
                 field_names = self.predicate.attrs
-            except AttributeError:
-                pass
         return field_names

edc_metadata/metadata_rules/rule_evaluator.py

@@ -77,5 +77,5 @@ class RuleEvaluator:
                     f"Registered subject required for rule {self!r}. "
                     f"subject_identifier='{self.related_visit.subject_identifier}'. "
                     f"Got {e}."
-                )
+                ) from e
         return self._registered_subject

edc_metadata/migrations/0002_auto_20161127_2226.py

@@ -4,7 +4,7 @@ from __future__ import unicode_literals
 
 from django.db import migrations, models
 
-import edc_utils
+import django.utils.timezone
 
 
 class Migration(migrations.Migration):
@@ -14,21 +14,21 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="crfmetadata",
             name="created",
-            field=models.DateTimeField(default=edc_utils.date.get_utcnow, editable=False),
+            field=models.DateTimeField(default=django.utils.timezone.now, editable=False),
         ),
         migrations.AlterField(
             model_name="crfmetadata",
             name="modified",
-            field=models.DateTimeField(default=edc_utils.date.get_utcnow, editable=False),
+            field=models.DateTimeField(default=django.utils.timezone.now, editable=False),
         ),
         migrations.AlterField(
             model_name="requisitionmetadata",
             name="created",
-            field=models.DateTimeField(default=edc_utils.date.get_utcnow, editable=False),
+            field=models.DateTimeField(default=django.utils.timezone.now, editable=False),
         ),
         migrations.AlterField(
             model_name="requisitionmetadata",
             name="modified",
-            field=models.DateTimeField(default=edc_utils.date.get_utcnow, editable=False),
+            field=models.DateTimeField(default=django.utils.timezone.now, editable=False),
         ),
     ]