clinicedc 2.0.38__py3-none-any.whl → 2.0.40__py3-none-any.whl
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- {clinicedc-2.0.38.dist-info → clinicedc-2.0.40.dist-info}/METADATA +3 -12
- {clinicedc-2.0.38.dist-info → clinicedc-2.0.40.dist-info}/RECORD +146 -153
- {clinicedc-2.0.38.dist-info → clinicedc-2.0.40.dist-info}/WHEEL +1 -1
- edc_adverse_event/dashboard_urls.py +2 -0
- edc_adverse_event/middleware.py +7 -6
- edc_adverse_event/navbars.py +4 -8
- edc_adverse_event/templates/edc_adverse_event/tmg/tmg_ae_listboard_result.html +27 -23
- edc_adverse_event/templatetags/edc_adverse_event_extras.py +21 -34
- edc_adverse_event/urls.py +14 -6
- edc_adverse_event/view_mixins/ae/ae_listboard_view_mixin.py +6 -8
- edc_adverse_event/view_mixins/ae/death_report_listboard_view_mixin.py +2 -4
- edc_adverse_event/view_mixins/tmg/tmg_ae_listboard_view_mixin.py +9 -7
- edc_adverse_event/views/home_view.py +1 -2
- edc_adverse_event/views/tmg/death_listboard_view.py +8 -6
- edc_adverse_event/views/tmg/home_view.py +4 -3
- edc_adverse_event/views/tmg/summary_listboard_view.py +4 -4
- edc_appointment/utils.py +3 -6
- edc_appointment/views/unscheduled_appointment_view.py +1 -1
- edc_consent/form_validators/consent_definition_form_validator_mixin.py +5 -2
- edc_consent/model_mixins/consent_version_model_mixin.py +1 -1
- edc_consent/navbars.py +2 -1
- edc_crf/model_mixins/crf_model_mixin.py +5 -1
- edc_crf/model_mixins/crf_no_manager_model_mixin.py +2 -2
- edc_crf/model_mixins/singleton_crf_model_mixin.py +1 -1
- edc_dashboard/middleware.py +10 -16
- edc_dashboard/middleware_mixins.py +10 -0
- edc_dashboard/navbars.py +1 -1
- edc_dashboard/url_config.py +50 -31
- edc_dashboard/url_names.py +23 -17
- edc_dashboard/utils.py +4 -4
- edc_dashboard/view_mixins/template_request_context_mixin.py +5 -8
- edc_dashboard/view_mixins/url_request_context_mixin.py +38 -26
- edc_dashboard/views/administration_view.py +2 -2
- edc_dashboard/views/dashboard_view.py +5 -10
- edc_data_manager/handlers/handlers.py +17 -5
- edc_data_manager/models/query_rule.py +7 -7
- edc_data_manager/navbar_item.py +1 -1
- edc_data_manager/rule/query_rule_wrapper.py +1 -1
- edc_data_manager/rule/rule_runner.py +6 -6
- edc_device/navbars.py +1 -1
- edc_export/navbars.py +2 -2
- edc_glucose/model_mixin_factories/fasting_model_mixin_factory.py +1 -1
- edc_identifier/identifier.py +6 -9
- edc_lab_dashboard/dashboard_urls.py +7 -5
- edc_lab_dashboard/middleware.py +10 -17
- edc_lab_dashboard/navbars.py +9 -9
- edc_lab_dashboard/templates/edc_lab_dashboard/listboard/tags/status_column.html +7 -0
- edc_lab_dashboard/urls.py +2 -5
- edc_lab_dashboard/view_mixins/form_action_view_mixin.py +1 -2
- edc_lab_dashboard/views/action_views/action_view.py +6 -6
- edc_lab_dashboard/views/action_views/aliquot_view.py +1 -1
- edc_lab_dashboard/views/action_views/manage_box_item_view.py +2 -3
- edc_lab_dashboard/views/action_views/manage_manifest_view.py +1 -1
- edc_lab_dashboard/views/action_views/manifest_view.py +2 -2
- edc_lab_dashboard/views/action_views/pack_view.py +2 -2
- edc_lab_dashboard/views/action_views/process_view.py +1 -1
- edc_lab_dashboard/views/action_views/receive_view.py +1 -1
- edc_lab_dashboard/views/action_views/requisition_view.py +1 -1
- edc_lab_dashboard/views/action_views/verify_box_item_view.py +1 -1
- edc_lab_dashboard/views/listboard_views/manage_box_listboard_view.py +4 -5
- edc_lab_dashboard/views/listboard_views/manifest_listboard_view.py +5 -6
- edc_lab_dashboard/views/listboard_views/process_listboard_view.py +4 -5
- edc_lab_dashboard/views/listboard_views/receive_listboard_view.py +5 -6
- edc_lab_dashboard/views/listboard_views/verify_box_listboard_view.py +5 -6
- edc_label/navbars.py +1 -1
- edc_list_data/admin.py +3 -3
- edc_list_data/load_model_data.py +1 -1
- edc_list_data/management/commands/load_list_data.py +2 -2
- edc_list_data/site_list_data.py +4 -4
- edc_listboard/middleware.py +9 -8
- edc_listboard/templates/edc_listboard/listboard.html +1 -1
- edc_listboard/view_mixins/listboard_filter_view_mixin.py +1 -1
- edc_listboard/view_mixins/search_form_view_mixin.py +1 -1
- edc_listboard/views/listboard_view.py +16 -25
- edc_listboard/views/screen/screening_listboard_view.py +2 -2
- edc_listboard/views/subject/subject_listboard_view.py +2 -2
- edc_locator/forms/subject_locator_form_validator.py +2 -2
- edc_ltfu/action_items.py +1 -2
- edc_ltfu/forms/ltfu_form_validator_mixin.py +3 -3
- edc_ltfu/modeladmin_mixin.py +1 -1
- edc_ltfu/modelform_mixins.py +2 -2
- edc_metadata/admin/modeladmin_mixins.py +11 -9
- edc_metadata/management/commands/update_metadata.py +1 -1
- edc_metadata/management/commands/update_metadata_schedule_names.py +7 -7
- edc_metadata/management/commands/validate_entry_status.py +1 -1
- edc_metadata/management/commands/validate_rule_groups.py +1 -1
- edc_metadata/metadata/metadata_getter.py +3 -5
- edc_metadata/metadata_handler.py +5 -5
- edc_metadata/metadata_mixins/source_model_metadata_mixin.py +1 -1
- edc_metadata/metadata_refresher.py +1 -1
- edc_metadata/metadata_rules/crf/crf_rule.py +1 -1
- edc_metadata/metadata_rules/logic.py +3 -3
- edc_metadata/metadata_rules/persistant_singleton_mixin.py +2 -4
- edc_metadata/metadata_rules/requisition/requisition_rule_group.py +1 -1
- edc_metadata/metadata_rules/rule.py +4 -3
- edc_metadata/metadata_rules/rule_group.py +2 -2
- edc_metadata/metadata_rules/rule_group_meta_options.py +2 -2
- edc_metadata/metadata_rules/rule_group_metaclass.py +21 -22
- edc_metadata/metadata_rules/site.py +1 -1
- edc_metadata/metadata_updater.py +4 -3
- edc_metadata/model_mixins/creates/creates_metadata_model_mixin.py +3 -5
- edc_metadata/model_mixins/updates/updates_metadata_model_mixin.py +1 -1
- edc_metadata/next_form_getter.py +15 -19
- edc_metadata/offline_models.py +1 -1
- edc_metadata/requisition/requisition_metadata_handler.py +5 -5
- edc_metadata/update_metadata_on_schedule_change.py +2 -4
- edc_metadata/utils.py +1 -1
- edc_model/models/signals.py +7 -2
- edc_model_admin/mixins/model_admin_redirect_on_delete_mixin.py +4 -3
- edc_navbar/apps.py +0 -2
- edc_navbar/navbar.py +1 -1
- edc_navbar/navbar_item.py +29 -16
- edc_navbar/navbars.py +6 -19
- edc_navbar/site_navbars.py +6 -7
- edc_navbar/system_checks.py +3 -10
- edc_navbar/utils.py +14 -0
- edc_navbar/view_mixin.py +6 -9
- edc_pharmacy/navbars.py +1 -1
- edc_pharmacy/views/confirm_stock_from_queryset_view.py +3 -3
- edc_protocol/middleware.py +9 -13
- edc_protocol/navbars.py +1 -1
- edc_refusal/forms.py +1 -3
- edc_reportable/utils/convert_units.py +1 -1
- edc_review_dashboard/middleware.py +6 -3
- edc_review_dashboard/navbars.py +1 -2
- edc_review_dashboard/urls.py +3 -2
- edc_review_dashboard/views/subject_review_listboard_view.py +4 -2
- edc_subject_dashboard/dashboard_templates.py +1 -3
- edc_subject_dashboard/dashboard_urls.py +8 -0
- edc_subject_dashboard/middleware.py +10 -7
- edc_subject_dashboard/templates/edc_subject_dashboard/buttons/refresh_appointments_button.html +1 -1
- edc_subject_dashboard/templates/edc_subject_dashboard/dashboard.html +1 -1
- edc_subject_dashboard/templatetags/edc_subject_dashboard_extras.py +3 -1
- edc_subject_dashboard/urls.py +13 -4
- edc_subject_dashboard/views/base_requisition_view.py +2 -1
- edc_subject_dashboard/views/subject_dashboard_view.py +1 -2
- edc_timepoint/__init__.py +0 -2
- edc_timepoint/model_mixins.py +1 -2
- edc_timepoint/utils.py +1 -1
- edc_timepoint/visit_timepoint_lookup.py +6 -0
- edc_visit_schedule/admin/subject_schedule_history_admin.py +1 -2
- edc_visit_schedule/navbars.py +3 -4
- edc_visit_schedule/visit/visit.py +15 -0
- edc_visit_tracking/model_mixins/visit_model_mixin/visit_model_mixin.py +5 -0
- edc_visit_tracking/models/subject_visit.py +5 -0
- edc_lab_dashboard/model_wrappers/__init__.py +0 -8
- edc_lab_dashboard/model_wrappers/aliquot_model_wrapper.py +0 -31
- edc_lab_dashboard/model_wrappers/base_box_item_model_wrapper.py +0 -21
- edc_lab_dashboard/model_wrappers/box_model_wrapper.py +0 -12
- edc_lab_dashboard/model_wrappers/manage_box_item_model_wrapper.py +0 -6
- edc_lab_dashboard/model_wrappers/manifest_item_model_wrapper.py +0 -21
- edc_lab_dashboard/model_wrappers/manifest_model_wrapper.py +0 -11
- edc_lab_dashboard/model_wrappers/requisition_model_wrapper.py +0 -25
- edc_lab_dashboard/model_wrappers/result_model_wrapper.py +0 -8
- edc_lab_dashboard/model_wrappers/verify_box_model_wrapper.py +0 -10
- edc_navbar/get_default_navbar.py +0 -9
- {clinicedc-2.0.38.dist-info → clinicedc-2.0.40.dist-info}/licenses/LICENSE +0 -0
edc_adverse_event/middleware.py
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from edc_dashboard.middleware_mixins import EdcTemplateMiddlewareMixin
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from .dashboard_templates import dashboard_templates
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from .dashboard_urls import dashboard_urls
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class DashboardMiddleware:
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class DashboardMiddleware(EdcTemplateMiddlewareMixin):
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def __init__(self, get_response):
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self.get_response = get_response
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def __call__(self, request):
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return
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self.check_for_required_request_attrs(request)
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return self.get_response(request)
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def process_view(self, request, *args):
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request.url_name_data.update(**dashboard_urls)
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template_data
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request.template_data.update(**template_data)
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request.template_data.update(**dashboard_templates)
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def process_template_response(self, request, response):
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if response
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if getattr(response, "context_data", None):
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response.context_data.update(**request.url_name_data)
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response.context_data.update(**request.template_data)
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return response
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edc_adverse_event/navbars.py
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from django.conf import settings
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from edc_navbar import Navbar, NavbarItem, site_navbars
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no_url_namespace = True if settings.APP_NAME == "edc_adverse_event" else False
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ae_navbar_item = NavbarItem(
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name="ae_home",
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title="Adverse Events",
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label="AE",
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codename="edc_adverse_event.nav_ae_section",
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url_names_key="ae_home_url",
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url_with_namespace="edc_adverse_event:ae_home_url",
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)
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tmg_navbar_item = NavbarItem(
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name="tmg_home",
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label="TMG",
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codename="edc_adverse_event.nav_tmg_section",
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url_names_key="tmg_home_url",
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url_with_namespace="edc_adverse_event:tmg_home_url",
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)
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ae_navbar = Navbar(name="edc_adverse_event")
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{% has_perms_for_tmg_role as may_access_page %}
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{% if may_access_page %}
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{% for result in results %}
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{% with results_loop=forloop %}
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<div class="panel panel-default">
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<div class="panel-heading clearfix">
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<span class="badge">{{
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<span class="badge">{{ results_loop.counter }}</span> <span class="text text-uppercase">{{ result.subject_identifier }}</span> {% copy_string_to_clipboard_button result.subject_identifier %} <span class="text text-muted small">{{ utc_date|timeuntil:result.report_datetime.date }} ago</span>
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<span class="pull-right">
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<div class="btn-group">
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{% if result.identifier %}
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<a class="btn btn-sm btn-default" role="button" title="Go to action item" href="{{ result.get_absolute_url }}?next={{ listboard_filter_url }},subject_identifier&subject_identifier={{ result.subject_identifier }}">{{ result.identifier }}</a>
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{% endif %}
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<a class="btn btn-sm btn-primary" role="button" title="go to list of reported visits for this subject" href="{% url subject_review_listboard_url|default:"subject_review_listboard_url_cannot_be_none" subject_identifier=result.subject_identifier %}?q={{ result.subject_identifier }}">Subject Review <i class="fas fa-share fa-fw"></i></a>
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</div>
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</span>
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<div class="list-group">
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<div class="list-group-item list-group-item-default"><i class="fa-solid fa-folder-tree fa-fw"></i> TMG documents in workflow </div>
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{# {% render_tmg_panel action_item=result by_user_created_only=True counter=
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{# {% render_tmg_panel action_item=result by_user_created_only=True counter=results_loop.counter report_status=result.reference_obj.report_status next_url_name=listboard_filter_url %} #}
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{# AE TMG #}
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{% ae_tmg_action_item
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{% endfor %}
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{% ae_tmg_action_item_queryset result.subject_identifier status as ae_tmg_action_item_qs %}
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{% for ae_tmg_action_item in ae_tmg_action_item_qs %}
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{% render_tmg_panel action_item=ae_tmg_action_item by_user_created_only=True counter=results_loop.counter report_status=result.reference_obj.report_status next_url_name=listboard_filter_url %}
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{% endfor %}
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{% if status != NEW %}
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{% ae_tmg_queryset subject_identifier=result.subject_identifier as ae_tmg_qs %}
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{% for ae_tmg in ae_tmg_qs %}
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{% render_tmg_panel reference_obj=ae_tmg by_user_created_only=True counter=results_loop.counter next_url_name=listboard_filter_url %}
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{% endfor %}
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{% endif %}
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{# DEATH REPORT TMG #}
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{% death_report_tmg_action_item subject_identifier=result.subject_identifier as tmg_action_item %}
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{% if tmg_action_item %}
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{% render_tmg_panel action_item=tmg_action_item by_user_created_only=True counter=
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{% render_tmg_panel action_item=tmg_action_item by_user_created_only=True counter=results_loop.counter report_status=result.reference_obj.report_status next_url_name=listboard_filter_url %}
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{% endif %}
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{% else %}
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{% for death_report_tmg in qs %}
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{% render_tmg_panel reference_obj=death_report_tmg by_user_created_only=True counter=
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{% render_tmg_panel reference_obj=death_report_tmg by_user_created_only=True counter=results_loop.counter next_url_name=listboard_filter_url %}
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{% endfor %}
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{% endif %}
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{% death_report_tmg_second_action_item subject_identifier=result.subject_identifier as tmg_action_item %}
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{% if tmg_action_item %}
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{% render_tmg_panel action_item=tmg_action_item by_user_created_only=True counter=
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{% render_tmg_panel action_item=tmg_action_item by_user_created_only=True counter=results_loop.counter report_status=result.reference_obj.report_status next_url_name=listboard_filter_url %}
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{% endif %}
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{% else %}
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{% for death_report_tmg in qs %}
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{% render_tmg_panel reference_obj=death_report_tmg by_user_created_only=True counter=results_loop.counter next_url_name=listboard_filter_url %}
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{% endfor %}
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{% endif %}
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<div class="list-group">
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{# AE INTIAL #}
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<div class="list-group-item"><i class="fa-regular fa-file fa-fw"></i> First document in workflow</div>
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{% ae_tmg_action_item_queryset result.subject_identifier status as ae_tmg_action_item_qs %}
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{% for ae_tmg_action_item in ae_tmg_action_item_qs %}
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{% render_tmg_panel action_item=ae_tmg_action_item.parent_action_item counter=results_loop.counter next_url_name=listboard_filter_url %}
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{% endfor %}
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{% if result.related_action_item and result.parent_action_item.reference_obj.action_identifier != result.related_action_item.reference_obj.action_identifier %}
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{% render_tmg_panel action_item=result.related_action_item counter=
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+
{% render_tmg_panel action_item=result.related_action_item counter=results_loop.counter next_url_name=listboard_filter_url %}
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{% endif %}
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{% endif %}
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{% ae_followup_queryset ae_initial=result.parent_action_item.reference_obj as qs %}
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{% render_tmg_panel reference_obj=ae_followup counter=
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{% render_tmg_panel reference_obj=ae_followup counter=results_loop.counter next_url_name=listboard_filter_url %}
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{% endfor %}
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{% death_report_queryset subject_identifier=result.subject_identifier as qs %}
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{% for death_report in qs %}
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{% render_tmg_panel reference_obj=death_report counter=
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{% render_tmg_panel reference_obj=death_report counter=results_loop.counter next_url_name=listboard_filter_url %}
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{% endfor %}
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</div>
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</div>
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</div>
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{% endwith %}
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{% else %}
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context["YES"] = YES
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try:
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context["sae_reason"] =
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mark_safe(wrapx(escape_braces(ae_initial.sae_reason.name), wrap_length)), # nosec B703, B308
|
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context["sae_reason"] = mark_safe( # noqa: S308
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wrapx(escape_braces(ae_initial.sae_reason.name), wrap_length)
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)
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except AttributeError:
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|
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context["ae_description"] =
|
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mark_safe(wrapx(escape_braces(ae_initial.ae_description), wrap_length)), # nosec B703, B308
|
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context["ae_description"] = mark_safe(
|
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wrapx(escape_braces(ae_initial.ae_description), wrap_length)
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)
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@@ -111,11 +109,8 @@ def format_ae_followup_description(context, ae_followup, wrap_length):
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try:
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|
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|
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mark_safe(
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wrapx(escape_braces(ae_followup.ae_initial.sae_reason.name), wrap_length)
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-
), # nosec B703, B308
|
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+
context["sae_reason"] = mark_safe( # noqa: S308
|
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wrapx(escape_braces(ae_followup.ae_initial.sae_reason.name), wrap_length)
|
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)
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except AttributeError:
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context["sae_reason"] = ""
|
|
@@ -177,55 +172,47 @@ def render_death_report_tmg_panel(context, action_item: ActionItem = None):
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@register.simple_tag
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def ae_tmg_queryset(subject_identifier
|
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+
def ae_tmg_queryset(subject_identifier) -> QuerySet[DeathReportTmgModel]:
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return get_ae_model("aetmg").objects.filter(subject_identifier=subject_identifier)
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@register.simple_tag
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def death_report_tmg_queryset(
|
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-
subject_identifier: str = None,
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-
) -> QuerySet[DeathReportTmgModel]:
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+
def death_report_tmg_queryset(subject_identifier: str) -> QuerySet[DeathReportTmgModel]:
|
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return get_ae_model("deathreporttmg").objects.filter(subject_identifier=subject_identifier)
|
|
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182
|
|
|
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|
@register.simple_tag
|
|
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|
-
def death_report_tmg2_queryset(
|
|
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|
-
subject_identifier: str = None,
|
|
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-
) -> QuerySet[DeathReportTmgSecondModel]:
|
|
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+
def death_report_tmg2_queryset(subject_identifier: str) -> QuerySet[DeathReportTmgSecondModel]:
|
|
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|
return get_ae_model("deathreporttmgsecond").objects.filter(
|
|
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|
subject_identifier=subject_identifier
|
|
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|
)
|
|
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189
|
|
|
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190
|
|
|
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191
|
@register.simple_tag
|
|
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|
-
def death_report_queryset(
|
|
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|
-
subject_identifier: str = None,
|
|
203
|
-
) -> QuerySet[DeathReportTmgSecondModel]:
|
|
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|
+
def death_report_queryset(subject_identifier: str) -> QuerySet[DeathReportTmgSecondModel]:
|
|
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193
|
return get_ae_model("deathreport").objects.filter(subject_identifier=subject_identifier)
|
|
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194
|
|
|
206
195
|
|
|
207
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|
@register.simple_tag
|
|
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197
|
def ae_followup_queryset(
|
|
209
198
|
ae_initial: AeInitialModel = None,
|
|
210
|
-
) -> QuerySet[AeFollowupModel]
|
|
199
|
+
) -> QuerySet[AeFollowupModel]:
|
|
211
200
|
if ae_initial:
|
|
212
201
|
return get_ae_model("aefollowup").objects.filter(ae_initial_id=ae_initial.id)
|
|
213
|
-
return
|
|
202
|
+
return get_ae_model("aefollowup").objects.none()
|
|
214
203
|
|
|
215
204
|
|
|
216
205
|
@register.simple_tag
|
|
217
|
-
def
|
|
218
|
-
|
|
219
|
-
|
|
220
|
-
|
|
221
|
-
|
|
222
|
-
|
|
223
|
-
obj = None
|
|
224
|
-
return obj
|
|
206
|
+
def ae_tmg_action_item_queryset(subject_identifier: str, *status) -> QuerySet[ActionItem]:
|
|
207
|
+
return django_apps.get_model("edc_action_item.actionitem").objects.filter(
|
|
208
|
+
subject_identifier=subject_identifier,
|
|
209
|
+
action_type__name=AE_TMG_ACTION,
|
|
210
|
+
status__in=status,
|
|
211
|
+
)
|
|
225
212
|
|
|
226
213
|
|
|
227
214
|
@register.simple_tag
|
|
228
|
-
def death_report_tmg_action_item(subject_identifier: str
|
|
215
|
+
def death_report_tmg_action_item(subject_identifier: str) -> ActionItem:
|
|
229
216
|
try:
|
|
230
217
|
obj = django_apps.get_model("edc_action_item.actionitem").objects.get(
|
|
231
218
|
subject_identifier=subject_identifier,
|
|
@@ -237,7 +224,7 @@ def death_report_tmg_action_item(subject_identifier: str = None) -> ActionItem:
|
|
|
237
224
|
|
|
238
225
|
|
|
239
226
|
@register.simple_tag
|
|
240
|
-
def death_report_tmg_second_action_item(subject_identifier: str
|
|
227
|
+
def death_report_tmg_second_action_item(subject_identifier: str) -> ActionItem:
|
|
241
228
|
try:
|
|
242
229
|
obj = django_apps.get_model("edc_action_item.actionitem").objects.get(
|
|
243
230
|
subject_identifier=subject_identifier,
|
|
@@ -265,7 +252,7 @@ def render_tmg_panel(
|
|
|
265
252
|
reference_obj = reference_obj or get_reference_obj(action_item)
|
|
266
253
|
if not action_item and reference_obj:
|
|
267
254
|
action_item = reference_obj.action_item
|
|
268
|
-
disable_all =
|
|
255
|
+
disable_all = bool(not has_valid_tmg_perms(request=context["request"]))
|
|
269
256
|
if action_item:
|
|
270
257
|
params = dict(
|
|
271
258
|
user=context["request"].user,
|
edc_adverse_event/urls.py
CHANGED
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
from django.urls.conf import path
|
|
2
|
-
|
|
2
|
+
from edc_dashboard.url_names import url_names
|
|
3
3
|
from edc_protocol.research_protocol_config import ResearchProtocolConfig
|
|
4
4
|
|
|
5
5
|
from .admin_site import edc_adverse_event_admin
|
|
@@ -18,27 +18,32 @@ app_name = "edc_adverse_event"
|
|
|
18
18
|
|
|
19
19
|
urlpatterns = NewTmgAeListboardView.urls(
|
|
20
20
|
namespace=app_name,
|
|
21
|
-
|
|
21
|
+
url_names_key="new_tmg_ae_listboard_url",
|
|
22
|
+
identifier_label="subject_identifier",
|
|
22
23
|
identifier_pattern=ResearchProtocolConfig().subject_identifier_pattern,
|
|
23
24
|
)
|
|
24
25
|
urlpatterns += OpenTmgAeListboardView.urls(
|
|
25
26
|
namespace=app_name,
|
|
26
|
-
|
|
27
|
+
url_names_key="open_tmg_ae_listboard_url",
|
|
28
|
+
identifier_label="subject_identifier",
|
|
27
29
|
identifier_pattern=ResearchProtocolConfig().subject_identifier_pattern,
|
|
28
30
|
)
|
|
29
31
|
urlpatterns += ClosedTmgAeListboardView.urls(
|
|
30
32
|
namespace=app_name,
|
|
31
|
-
|
|
33
|
+
url_names_key="closed_tmg_ae_listboard_url",
|
|
34
|
+
identifier_label="subject_identifier",
|
|
32
35
|
identifier_pattern=ResearchProtocolConfig().subject_identifier_pattern,
|
|
33
36
|
)
|
|
34
37
|
urlpatterns += TmgDeathListboardView.urls(
|
|
35
38
|
namespace=app_name,
|
|
36
|
-
|
|
39
|
+
url_names_key="tmg_death_listboard_url",
|
|
40
|
+
identifier_label="subject_identifier",
|
|
37
41
|
identifier_pattern=ResearchProtocolConfig().subject_identifier_pattern,
|
|
38
42
|
)
|
|
39
43
|
urlpatterns += TmgSummaryListboardView.urls(
|
|
40
44
|
namespace=app_name,
|
|
41
|
-
|
|
45
|
+
url_names_key="tmg_summary_listboard_url",
|
|
46
|
+
identifier_label="subject_identifier",
|
|
42
47
|
identifier_pattern=ResearchProtocolConfig().subject_identifier_pattern,
|
|
43
48
|
)
|
|
44
49
|
urlpatterns += [
|
|
@@ -47,3 +52,6 @@ urlpatterns += [
|
|
|
47
52
|
path("admin/", edc_adverse_event_admin.urls),
|
|
48
53
|
path("", AeHomeView.as_view(), name="home_url"),
|
|
49
54
|
]
|
|
55
|
+
|
|
56
|
+
url_names.register(key="tmg_home_url", url_with_namespace=f"{app_name}:tmg_home_url")
|
|
57
|
+
url_names.register(key="ae_home_url", url_with_namespace=f"{app_name}:ae_home_url")
|
|
@@ -9,6 +9,7 @@ from django.utils.html import format_html
|
|
|
9
9
|
from django.utils.safestring import mark_safe
|
|
10
10
|
|
|
11
11
|
from edc_constants.constants import CLOSED, NEW, OPEN
|
|
12
|
+
from edc_dashboard.url_names import url_names
|
|
12
13
|
from edc_dashboard.view_mixins import EdcViewMixin
|
|
13
14
|
from edc_listboard.view_mixins import ListboardFilterViewMixin, SearchFormViewMixin
|
|
14
15
|
from edc_listboard.views import ListboardView as BaseListboardView
|
|
@@ -49,16 +50,16 @@ class AeListboardViewMixin(
|
|
|
49
50
|
ordering = "-report_datetime"
|
|
50
51
|
paginate_by = 25
|
|
51
52
|
search_form_url = "ae_listboard_url"
|
|
52
|
-
action_type_names =
|
|
53
|
+
action_type_names = (AE_INITIAL_ACTION, )
|
|
53
54
|
|
|
54
|
-
search_fields =
|
|
55
|
+
search_fields = (
|
|
55
56
|
"subject_identifier",
|
|
56
57
|
"action_identifier",
|
|
57
58
|
"parent_action_item__action_identifier",
|
|
58
59
|
"related_action_item__action_identifier",
|
|
59
60
|
"user_created",
|
|
60
61
|
"user_modified",
|
|
61
|
-
|
|
62
|
+
)
|
|
62
63
|
|
|
63
64
|
@property
|
|
64
65
|
def ae_initial_model_cls(self):
|
|
@@ -77,10 +78,7 @@ class AeListboardViewMixin(
|
|
|
77
78
|
kwargs.update(
|
|
78
79
|
AE_INITIAL_ACTION=AE_INITIAL_ACTION,
|
|
79
80
|
utc_date=timezone.now().date(),
|
|
80
|
-
**self.
|
|
81
|
-
new_key="ae_home_url",
|
|
82
|
-
existing_key=self.home_url,
|
|
83
|
-
),
|
|
81
|
+
**{"ae_home_url": url_names.get(self.home_url)},
|
|
84
82
|
)
|
|
85
83
|
return super().get_context_data(**kwargs)
|
|
86
84
|
|
|
@@ -98,7 +96,7 @@ class AeListboardViewMixin(
|
|
|
98
96
|
pks = []
|
|
99
97
|
for obj in queryset:
|
|
100
98
|
try:
|
|
101
|
-
obj.reference_obj
|
|
99
|
+
obj.reference_obj # noqa: B018
|
|
102
100
|
except ObjectDoesNotExist:
|
|
103
101
|
pks.append(obj.pk)
|
|
104
102
|
return queryset.exclude(pk__in=pks)
|
|
@@ -8,6 +8,7 @@ from django.utils.html import format_html
|
|
|
8
8
|
from django.utils.safestring import mark_safe
|
|
9
9
|
|
|
10
10
|
from edc_constants.constants import CLOSED, NEW, OPEN
|
|
11
|
+
from edc_dashboard.url_names import url_names
|
|
11
12
|
from edc_dashboard.view_mixins import EdcViewMixin
|
|
12
13
|
from edc_listboard.view_mixins import ListboardFilterViewMixin, SearchFormViewMixin
|
|
13
14
|
from edc_listboard.views import ListboardView as BaseListboardView
|
|
@@ -70,10 +71,7 @@ class DeathReportListboardViewMixin(
|
|
|
70
71
|
kwargs.update(
|
|
71
72
|
DEATH_REPORT_ACTION=DEATH_REPORT_ACTION,
|
|
72
73
|
utc_date=timezone.now().date(),
|
|
73
|
-
**self.
|
|
74
|
-
new_key="ae_home_url",
|
|
75
|
-
existing_key=self.home_url,
|
|
76
|
-
),
|
|
74
|
+
**{"ae_home_url": url_names.get(self.home_url)},
|
|
77
75
|
)
|
|
78
76
|
return super().get_context_data(**kwargs)
|
|
79
77
|
|
|
@@ -4,13 +4,13 @@ from typing import TYPE_CHECKING, Any
|
|
|
4
4
|
|
|
5
5
|
from django.db.models import Min
|
|
6
6
|
from django.utils import timezone
|
|
7
|
-
|
|
8
7
|
from edc_constants.constants import CLOSED, NEW, OPEN
|
|
9
8
|
from edc_dashboard.view_mixins import EdcViewMixin
|
|
9
|
+
from edc_export.constants import CANCELLED
|
|
10
10
|
from edc_listboard.view_mixins import ListboardFilterViewMixin, SearchFormViewMixin
|
|
11
11
|
from edc_listboard.views import ListboardView as BaseListboardView
|
|
12
12
|
from edc_navbar import NavbarViewMixin
|
|
13
|
-
from edc_navbar.
|
|
13
|
+
from edc_navbar.utils import get_default_navbar_name
|
|
14
14
|
|
|
15
15
|
from ...constants import (
|
|
16
16
|
AE_TMG_ACTION,
|
|
@@ -46,29 +46,31 @@ class TmgAeListboardViewMixin(
|
|
|
46
46
|
listboard_panel_title = "TMG: AE Reports"
|
|
47
47
|
listboard_view_permission_codename = "edc_adverse_event.view_tmg_listboard"
|
|
48
48
|
|
|
49
|
-
navbar_name =
|
|
49
|
+
navbar_name = get_default_navbar_name()
|
|
50
50
|
navbar_selected_item = "tmg_home"
|
|
51
51
|
ordering = "-report_datetime"
|
|
52
52
|
paginate_by = 10
|
|
53
53
|
search_form_url = "tmg_ae_listboard_url"
|
|
54
|
-
action_type_names =
|
|
54
|
+
action_type_names = (
|
|
55
55
|
AE_TMG_ACTION,
|
|
56
56
|
DEATH_REPORT_TMG_ACTION,
|
|
57
57
|
DEATH_REPORT_TMG_SECOND_ACTION,
|
|
58
|
-
|
|
58
|
+
)
|
|
59
59
|
|
|
60
|
-
search_fields =
|
|
60
|
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search_fields = (
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"subject_identifier",
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"action_identifier",
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"parent_action_item__action_identifier",
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"related_action_item__action_identifier",
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"user_created",
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"user_modified",
|
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-
|
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+
)
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68
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69
|
def get_context_data(self, **kwargs) -> dict[str, Any]:
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kwargs.update(
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AE_TMG_ACTION=AE_TMG_ACTION,
|
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+
NEW=NEW,
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+
CANCELLED=CANCELLED,
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74
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utc_date=timezone.now().date(),
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subject_identifier=self.kwargs.get("subject_identifier"),
|
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76
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)
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@@ -2,7 +2,6 @@ from typing import Any
|
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2
2
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3
3
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from django.urls import reverse
|
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4
4
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from django.views.generic import TemplateView
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-
|
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5
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from edc_dashboard.url_names import url_names
|
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7
6
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from edc_dashboard.view_mixins import EdcViewMixin, UrlRequestContextMixin
|
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8
7
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from edc_navbar import NavbarViewMixin
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@@ -37,6 +36,6 @@ class AeHomeView(UrlRequestContextMixin, EdcViewMixin, NavbarViewMixin, Template
|
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37
36
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ae_initial_changelist_url=ae_initial_changelist_url,
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death_report_changelist_url=death_report_changelist_url,
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39
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death_report_listboard_url=death_report_listboard_url,
|
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40
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-
**self.
|
|
39
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+
**{self.url_name: url_names.get(self.url_name)},
|
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41
40
|
)
|
|
42
41
|
return super().get_context_data(**kwargs)
|
|
@@ -5,7 +5,6 @@ from typing import Any
|
|
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5
5
|
|
|
6
6
|
from django.db.models import Q
|
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7
7
|
|
|
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|
-
from edc_dashboard.url_names import url_names
|
|
9
8
|
from edc_dashboard.view_mixins import EdcViewMixin
|
|
10
9
|
from edc_listboard.view_mixins import ListboardFilterViewMixin, SearchFormViewMixin
|
|
11
10
|
from edc_listboard.views import ListboardView as BaseListboardView
|
|
@@ -21,10 +20,11 @@ class DeathListboardView(
|
|
|
21
20
|
SearchFormViewMixin,
|
|
22
21
|
BaseListboardView,
|
|
23
22
|
):
|
|
23
|
+
subject_dashboard_url_name = "subject_dashboard_url" # see url_names
|
|
24
24
|
listboard_back_url = "tmg_home_url"
|
|
25
25
|
|
|
26
26
|
listboard_template = "tmg_death_listboard_template"
|
|
27
|
-
listboard_url = "tmg_death_listboard_url"
|
|
27
|
+
listboard_url = "tmg_death_listboard_url" # url_name
|
|
28
28
|
listboard_panel_style = "warning"
|
|
29
29
|
listboard_model = f"{get_adverse_event_app_label()}.deathreport"
|
|
30
30
|
listboard_model_manager_name = "objects"
|
|
@@ -33,18 +33,20 @@ class DeathListboardView(
|
|
|
33
33
|
navbar_selected_item = "tmg_home"
|
|
34
34
|
ordering = "-created"
|
|
35
35
|
paginate_by = 25
|
|
36
|
-
search_form_url = "tmg_death_listboard_url"
|
|
37
|
-
search_fields =
|
|
36
|
+
search_form_url = "tmg_death_listboard_url" # url_name
|
|
37
|
+
search_fields = (
|
|
38
38
|
"subject_identifier",
|
|
39
39
|
"action_identifier",
|
|
40
40
|
"parent_action_item__action_identifier",
|
|
41
41
|
"related_action_item__action_identifier",
|
|
42
42
|
"user_created",
|
|
43
43
|
"user_modified",
|
|
44
|
-
|
|
44
|
+
)
|
|
45
45
|
|
|
46
46
|
def get_context_data(self, **kwargs) -> dict[str, Any]:
|
|
47
|
-
kwargs.update(
|
|
47
|
+
# kwargs.update(
|
|
48
|
+
# {"subject_dashboard_url": url_names.get(self.subject_dashboard_url_name)}
|
|
49
|
+
# )
|
|
48
50
|
if self.kwargs.get("subject_identifier"):
|
|
49
51
|
kwargs.update({"q": self.kwargs.get("subject_identifier")})
|
|
50
52
|
return super().get_context_data(**kwargs)
|
|
@@ -38,9 +38,10 @@ class TmgHomeView(EdcViewMixin, NavbarViewMixin, TemplateView):
|
|
|
38
38
|
.values("status", "site__name")
|
|
39
39
|
.annotate(items=Count("status"))
|
|
40
40
|
)
|
|
41
|
-
notices = [
|
|
42
|
-
|
|
43
|
-
|
|
41
|
+
notices = [
|
|
42
|
+
(item.get("site__name"), item.get("status"), item.get("items"))
|
|
43
|
+
for item in qs.order_by("status", "site__name")
|
|
44
|
+
]
|
|
44
45
|
new_count = ActionItem.objects.filter(
|
|
45
46
|
action_type__name=AE_TMG_ACTION,
|
|
46
47
|
site__name=get_current_site(request=self.request).name,
|
|
@@ -42,20 +42,20 @@ class SummaryListboardView(
|
|
|
42
42
|
ordering = "-report_datetime"
|
|
43
43
|
paginate_by = 25
|
|
44
44
|
search_form_url = "tmg_summary_listboard_url"
|
|
45
|
-
action_type_names =
|
|
45
|
+
action_type_names = (
|
|
46
46
|
AE_TMG_ACTION,
|
|
47
47
|
DEATH_REPORT_TMG_ACTION,
|
|
48
48
|
DEATH_REPORT_ACTION,
|
|
49
49
|
AE_FOLLOWUP_ACTION,
|
|
50
|
-
|
|
51
|
-
search_fields =
|
|
50
|
+
)
|
|
51
|
+
search_fields = (
|
|
52
52
|
"subject_identifier",
|
|
53
53
|
"action_identifier",
|
|
54
54
|
"parent_action_item__action_identifier",
|
|
55
55
|
"related_action_item__action_identifier",
|
|
56
56
|
"user_created",
|
|
57
57
|
"user_modified",
|
|
58
|
-
|
|
58
|
+
)
|
|
59
59
|
|
|
60
60
|
def get_context_data(self, **kwargs) -> dict[str, Any]:
|
|
61
61
|
kwargs.update(AE_TMG_ACTION=AE_TMG_ACTION, utc_date=timezone.now().date())
|
edc_appointment/utils.py
CHANGED
|
@@ -23,7 +23,6 @@ from django.db import transaction
|
|
|
23
23
|
from django.db.models import Count, ProtectedError
|
|
24
24
|
from django.urls import reverse
|
|
25
25
|
from django.utils.translation import gettext as _
|
|
26
|
-
|
|
27
26
|
from edc_constants.constants import CLINIC, NOT_APPLICABLE, OK
|
|
28
27
|
from edc_constants.constants import ERROR as ERROR_CODE
|
|
29
28
|
from edc_dashboard.url_names import url_names
|
|
@@ -67,7 +66,6 @@ if TYPE_CHECKING:
|
|
|
67
66
|
from decimal import Decimal
|
|
68
67
|
|
|
69
68
|
from django.db.models import QuerySet
|
|
70
|
-
|
|
71
69
|
from edc_crf.model_mixins import CrfModelMixin as Base
|
|
72
70
|
from edc_metadata.model_mixins.creates import CreatesMetadataModelMixin
|
|
73
71
|
|
|
@@ -709,9 +707,8 @@ def skip_appointment(appointment: Appointment, comment: str | None = None):
|
|
|
709
707
|
|
|
710
708
|
def get_unscheduled_appointment_url(appointment: Appointment = None) -> str:
|
|
711
709
|
"""Returns a url for the unscheduled appointment."""
|
|
712
|
-
|
|
713
|
-
|
|
714
|
-
unscheduled_appointment_url_name = "edc_appointment:unscheduled_appointment_url"
|
|
710
|
+
dashboard_url = url_names.get("subject_dashboard_url")
|
|
711
|
+
unscheduled_appointment_url = "edc_appointment:unscheduled_appointment_url"
|
|
715
712
|
kwargs = dict(
|
|
716
713
|
subject_identifier=appointment.subject_identifier,
|
|
717
714
|
visit_schedule_name=appointment.visit_schedule_name,
|
|
@@ -722,7 +719,7 @@ def get_unscheduled_appointment_url(appointment: Appointment = None) -> str:
|
|
|
722
719
|
)
|
|
723
720
|
kwargs.update(visit_code_sequence=str(appointment.visit_code_sequence + 1))
|
|
724
721
|
kwargs.update(redirect_url=dashboard_url)
|
|
725
|
-
return reverse(
|
|
722
|
+
return reverse(unscheduled_appointment_url, kwargs=kwargs)
|
|
726
723
|
|
|
727
724
|
|
|
728
725
|
def update_appt_status_for_timepoint(related_visit: RelatedVisitModel) -> None:
|
|
@@ -27,7 +27,7 @@ class UnscheduledAppointmentView(View):
|
|
|
27
27
|
"""
|
|
28
28
|
|
|
29
29
|
unscheduled_appointment_cls = UnscheduledAppointmentCreator
|
|
30
|
-
|
|
30
|
+
dashboard_template_name = "subject_dashboard_template"
|
|
31
31
|
|
|
32
32
|
def get(self, request, *args, **kwargs): # noqa: ARG002
|
|
33
33
|
kwargs["suggested_visit_code_sequence"] = int(kwargs["visit_code_sequence"])
|