clinicedc 2.0.0__py3-none-any.whl → 2.0.1__py3-none-any.whl

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  1. {clinicedc-2.0.0.dist-info → clinicedc-2.0.1.dist-info}/METADATA +1 -1
  2. {clinicedc-2.0.0.dist-info → clinicedc-2.0.1.dist-info}/RECORD +72 -36
  3. {clinicedc-2.0.0.dist-info → clinicedc-2.0.1.dist-info}/WHEEL +1 -1
  4. edc_action_item/action.py +3 -2
  5. edc_action_item/data_fixers.py +1 -0
  6. edc_action_item/migrations/0038_alter_actionitem_revision_alter_actiontype_revision_and_more.py +86 -0
  7. edc_action_item/site_action_items.py +3 -1
  8. edc_adverse_event/migrations/0015_alter_aeactionclassification_revision_and_more.py +74 -0
  9. edc_appconfig/apps.py +3 -2
  10. edc_appointment/creators/appointments_creator.py +3 -2
  11. edc_appointment/migrations/0049_alter_appointment_revision_and_more.py +38 -0
  12. edc_appointment/model_mixins/appointment_model_mixin.py +5 -4
  13. edc_auth/auth_updater/group_updater.py +9 -3
  14. edc_auth/migrations/0034_alter_edcpermissions_revision_alter_role_revision.py +38 -0
  15. edc_consent/consent_definition.py +3 -2
  16. edc_consent/form_validators/subject_consent_form_validator.py +2 -1
  17. edc_consent/migrations/0005_alter_edcpermissions_revision.py +26 -0
  18. edc_consent/model_mixins/consent_extension_model_mixin.py +1 -0
  19. edc_consent/modelform_mixins/consent_modelform_mixin/consent_modelform_validation_mixin.py +3 -2
  20. edc_consent/models/signals.py +1 -0
  21. edc_consent/site_consents.py +1 -0
  22. edc_crf/crf_form_validator.py +2 -1
  23. edc_crf/migrations/0008_alter_crfstatus_revision.py +26 -0
  24. edc_dashboard/migrations/0005_alter_edcpermissions_revision.py +26 -0
  25. edc_data_manager/migrations/0039_alter_datadictionary_revision_and_more.py +101 -0
  26. edc_export/migrations/0021_alter_datarequest_revision_and_more.py +173 -0
  27. edc_facility/migrations/0015_alter_healthfacility_revision_and_more.py +38 -0
  28. edc_form_runners/migrations/0004_alter_issue_revision.py +26 -0
  29. edc_identifier/migrations/0010_alter_identifiermodel_revision.py +26 -0
  30. edc_lab/migrations/0035_alter_aliquot_revision_alter_box_revision_and_more.py +266 -0
  31. edc_lab_dashboard/migrations/0004_alter_edcpermissions_revision.py +26 -0
  32. edc_lab_results/model_mixins/insulin_model_mixin.py +1 -0
  33. edc_label/migrations/0006_alter_zpllabeltemplates_revision.py +29 -0
  34. edc_listboard/migrations/0006_alter_listboard_revision.py +29 -0
  35. edc_locator/migrations/0039_alter_historicalsubjectlocator_revision_and_more.py +38 -0
  36. edc_metadata/migrations/0030_alter_crfmetadata_revision_and_more.py +38 -0
  37. edc_navbar/migrations/0008_alter_edcpermissions_revision.py +26 -0
  38. edc_notification/migrations/0010_alter_notification_revision.py +26 -0
  39. edc_offstudy/migrations/0022_alter_historicalsubjectoffstudy_revision_and_more.py +41 -0
  40. edc_pharmacy/admin/stock/stock_request_admin.py +5 -4
  41. edc_pharmacy/admin/stock/stock_request_item_admin.py +5 -4
  42. edc_pharmacy/analytics/dataframes/get_next_scheduled_visit_for_subjects_df.py +10 -4
  43. edc_pharmacy/forms/stock/stock_request_form.py +15 -5
  44. edc_pharmacy/migrations/0088_alter_allocation_revision_alter_assignment_revision_and_more.py +794 -0
  45. edc_pharmacy/pdf_reports/stock_pdf_report.py +3 -2
  46. edc_protocol_incident/migrations/0023_alter_historicalprotocoldeviationviolation_revision_and_more.py +65 -0
  47. edc_pylabels/migrations/0012_alter_labelconfiguration_revision.py +26 -0
  48. edc_qareports/migrations/0018_alter_edcpermissions_revision_alter_note_revision.py +38 -0
  49. edc_qareports/utils.py +2 -1
  50. edc_randomization/migrations/0013_alter_edcpermissions_revision_and_more.py +50 -0
  51. edc_randomization/randomizer.py +2 -1
  52. edc_refusal/migrations/0011_alter_historicalsubjectrefusal_revision_and_more.py +38 -0
  53. edc_registration/migrations/0032_alter_historicalregisteredsubject_revision_and_more.py +38 -0
  54. edc_reportable/forms/reportables_form_validator_mixin.py +5 -4
  55. edc_reportable/migrations/0006_alter_gradingdata_revision_and_more.py +381 -0
  56. edc_reportable/utils/convert_units.py +2 -1
  57. edc_reportable/utils/molecular_weight_model_cls.py +1 -1
  58. edc_review_dashboard/migrations/0005_alter_edcpermissions_revision.py +26 -0
  59. edc_screening/migrations/0004_alter_edcpermissions_revision.py +26 -0
  60. edc_screening/screening_eligibility.py +1 -0
  61. edc_sites/migrations/0009_alter_edcpermissions_revision.py +26 -0
  62. edc_sites/single_site/single_site.py +1 -1
  63. edc_sites/site.py +2 -1
  64. edc_sites/utils/add_or_update_django_sites.py +1 -1
  65. edc_subject_dashboard/migrations/0004_alter_edcpermissions_revision.py +26 -0
  66. edc_unblinding/migrations/0013_alter_historicalunblindingrequest_revision_and_more.py +62 -0
  67. edc_visit_schedule/migrations/0018_alter_historicalonschedule_revision_and_more.py +86 -0
  68. edc_visit_schedule/schedule/schedule.py +4 -3
  69. edc_visit_schedule/site_visit_schedules.py +1 -1
  70. edc_visit_schedule/subject_schedule.py +2 -1
  71. edc_visit_tracking/migrations/0008_alter_historicalsubjectvisit_revision_and_more.py +65 -0
  72. {clinicedc-2.0.0.dist-info → clinicedc-2.0.1.dist-info}/licenses/LICENSE +0 -0
@@ -1,7 +1,5 @@
1
1
  from django.db.models import QuerySet, Sum
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  from django.utils.translation import gettext as _
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- from edc_pdf_reports import Report
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- from edc_protocol.research_protocol_config import ResearchProtocolConfig
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  from reportlab.graphics.barcode import code128
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  from reportlab.lib import colors
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  from reportlab.lib.enums import TA_CENTER, TA_LEFT, TA_RIGHT
@@ -10,6 +8,9 @@ from reportlab.lib.units import cm, mm
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  from reportlab.pdfbase.pdfmetrics import stringWidth
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  from reportlab.platypus import Paragraph, SimpleDocTemplate, Spacer, Table, TableStyle
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+ from edc_pdf_reports import Report
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+ from edc_protocol.research_protocol_config import ResearchProtocolConfig
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+
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  from ..models import Stock
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  from ..utils import get_related_or_none
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@@ -0,0 +1,65 @@
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+ # Generated by Django 5.2.4 on 2025-09-10 03:24
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+
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+ import django_revision.revision_field
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+ from django.db import migrations
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+
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+
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+ class Migration(migrations.Migration):
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+
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+ dependencies = [
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+ (
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+ "edc_protocol_incident",
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+ "0022_alter_historicalprotocoldeviationviolation_site_and_more",
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+ ),
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+ ]
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+
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+ operations = [
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+ migrations.AlterField(
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+ model_name="historicalprotocoldeviationviolation",
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+ name="revision",
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+ field=django_revision.revision_field.RevisionField(
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+ blank=True,
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+ editable=False,
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+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
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+ max_length=75,
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+ null=True,
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+ verbose_name="Revision",
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+ ),
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+ ),
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+ migrations.AlterField(
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+ model_name="historicalprotocolincident",
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+ name="revision",
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+ field=django_revision.revision_field.RevisionField(
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+ blank=True,
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+ editable=False,
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+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
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+ max_length=75,
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+ null=True,
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+ verbose_name="Revision",
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+ ),
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+ ),
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+ migrations.AlterField(
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+ model_name="protocoldeviationviolation",
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+ name="revision",
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+ field=django_revision.revision_field.RevisionField(
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+ blank=True,
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+ editable=False,
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+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
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+ max_length=75,
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+ null=True,
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+ verbose_name="Revision",
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+ ),
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+ ),
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+ migrations.AlterField(
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+ model_name="protocolincident",
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+ name="revision",
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+ field=django_revision.revision_field.RevisionField(
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+ blank=True,
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+ editable=False,
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+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
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+ max_length=75,
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+ null=True,
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+ verbose_name="Revision",
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+ ),
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+ ),
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+ ]
@@ -0,0 +1,26 @@
1
+ # Generated by Django 5.2.4 on 2025-09-10 03:24
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+
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+ import django_revision.revision_field
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+ from django.db import migrations
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+
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+
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+ class Migration(migrations.Migration):
8
+
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+ dependencies = [
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+ ("edc_pylabels", "0011_alter_labelconfiguration_name"),
11
+ ]
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+
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+ operations = [
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+ migrations.AlterField(
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+ model_name="labelconfiguration",
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+ name="revision",
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+ field=django_revision.revision_field.RevisionField(
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+ blank=True,
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+ editable=False,
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+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
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+ max_length=75,
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+ null=True,
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+ verbose_name="Revision",
24
+ ),
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+ ),
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+ ]
@@ -0,0 +1,38 @@
1
+ # Generated by Django 5.2.4 on 2025-09-10 03:24
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+
3
+ import django_revision.revision_field
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+ from django.db import migrations
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+
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+
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+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ("edc_qareports", "0017_auto_20240816_0256"),
11
+ ]
12
+
13
+ operations = [
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+ migrations.AlterField(
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+ model_name="edcpermissions",
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+ name="revision",
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+ field=django_revision.revision_field.RevisionField(
18
+ blank=True,
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+ editable=False,
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+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
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+ max_length=75,
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+ null=True,
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+ verbose_name="Revision",
24
+ ),
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+ ),
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+ migrations.AlterField(
27
+ model_name="note",
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+ name="revision",
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+ field=django_revision.revision_field.RevisionField(
30
+ blank=True,
31
+ editable=False,
32
+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
33
+ max_length=75,
34
+ null=True,
35
+ verbose_name="Revision",
36
+ ),
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+ ),
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+ ]
edc_qareports/utils.py CHANGED
@@ -4,7 +4,8 @@ from warnings import warn
4
4
 
5
5
  from django.apps import apps as django_apps
6
6
  from django.conf import settings
7
- from django.db import connection, OperationalError
7
+ from django.db import OperationalError, connection
8
+
8
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  from edc_auth.get_app_codenames import get_app_codenames
9
10
 
10
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@@ -0,0 +1,50 @@
1
+ # Generated by Django 5.2.4 on 2025-09-10 03:24
2
+
3
+ import django_revision.revision_field
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+ from django.db import migrations
5
+
6
+
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+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
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+ ("edc_randomization", "0012_alter_randomizationlist_options_and_more"),
11
+ ]
12
+
13
+ operations = [
14
+ migrations.AlterField(
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+ model_name="edcpermissions",
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+ name="revision",
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+ field=django_revision.revision_field.RevisionField(
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+ blank=True,
19
+ editable=False,
20
+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
21
+ max_length=75,
22
+ null=True,
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+ verbose_name="Revision",
24
+ ),
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+ ),
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+ migrations.AlterField(
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+ model_name="historicalrandomizationlist",
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+ name="revision",
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+ field=django_revision.revision_field.RevisionField(
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+ blank=True,
31
+ editable=False,
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+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
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+ max_length=75,
34
+ null=True,
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+ verbose_name="Revision",
36
+ ),
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+ ),
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+ migrations.AlterField(
39
+ model_name="randomizationlist",
40
+ name="revision",
41
+ field=django_revision.revision_field.RevisionField(
42
+ blank=True,
43
+ editable=False,
44
+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
45
+ max_length=75,
46
+ null=True,
47
+ verbose_name="Revision",
48
+ ),
49
+ ),
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+ ]
@@ -3,13 +3,14 @@ from __future__ import annotations
3
3
  import warnings
4
4
  from datetime import datetime
5
5
  from pathlib import Path
6
- from typing import Any, Type, TYPE_CHECKING
6
+ from typing import TYPE_CHECKING, Any, Type
7
7
 
8
8
  from django.apps import apps as django_apps
9
9
  from django.conf import settings
10
10
  from django.core.exceptions import ObjectDoesNotExist, ValidationError
11
11
 
12
12
  from edc_registration.utils import get_registered_subject_model_cls
13
+
13
14
  from .constants import (
14
15
  DEFAULT_ASSIGNMENT_DESCRIPTION_MAP,
15
16
  DEFAULT_ASSIGNMENT_MAP,
@@ -0,0 +1,38 @@
1
+ # Generated by Django 5.2.4 on 2025-09-10 03:24
2
+
3
+ import django_revision.revision_field
4
+ from django.db import migrations
5
+
6
+
7
+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ("edc_refusal", "0010_alter_historicalsubjectrefusal_site_and_more"),
11
+ ]
12
+
13
+ operations = [
14
+ migrations.AlterField(
15
+ model_name="historicalsubjectrefusal",
16
+ name="revision",
17
+ field=django_revision.revision_field.RevisionField(
18
+ blank=True,
19
+ editable=False,
20
+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
21
+ max_length=75,
22
+ null=True,
23
+ verbose_name="Revision",
24
+ ),
25
+ ),
26
+ migrations.AlterField(
27
+ model_name="subjectrefusal",
28
+ name="revision",
29
+ field=django_revision.revision_field.RevisionField(
30
+ blank=True,
31
+ editable=False,
32
+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
33
+ max_length=75,
34
+ null=True,
35
+ verbose_name="Revision",
36
+ ),
37
+ ),
38
+ ]
@@ -0,0 +1,38 @@
1
+ # Generated by Django 5.2.4 on 2025-09-10 03:24
2
+
3
+ import django_revision.revision_field
4
+ from django.db import migrations
5
+
6
+
7
+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ("edc_registration", "0031_alter_historicalregisteredsubject_site_and_more"),
11
+ ]
12
+
13
+ operations = [
14
+ migrations.AlterField(
15
+ model_name="historicalregisteredsubject",
16
+ name="revision",
17
+ field=django_revision.revision_field.RevisionField(
18
+ blank=True,
19
+ editable=False,
20
+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
21
+ max_length=75,
22
+ null=True,
23
+ verbose_name="Revision",
24
+ ),
25
+ ),
26
+ migrations.AlterField(
27
+ model_name="registeredsubject",
28
+ name="revision",
29
+ field=django_revision.revision_field.RevisionField(
30
+ blank=True,
31
+ editable=False,
32
+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
33
+ max_length=75,
34
+ null=True,
35
+ verbose_name="Revision",
36
+ ),
37
+ ),
38
+ ]
@@ -40,15 +40,16 @@ class ReportablesFormValidatorMixin:
40
40
  subject_identifier=self.subject_identifier
41
41
  )
42
42
  # check normal ranges and grade result values
43
- reference_range_evaluator = self.reference_range_evaluator_cls(
44
- reference_range_collection_name,
43
+ options = dict(
45
44
  cleaned_data=deepcopy(cleaned_data),
46
45
  gender=registered_subject.gender,
47
46
  dob=registered_subject.dob,
48
47
  report_datetime=self.report_datetime,
49
48
  value_field_suffix=self.value_field_suffix,
50
- age_units=self.age_units,
51
- **reportables_evaluator_options,
49
+ )
50
+ options.update(**reportables_evaluator_options)
51
+ reference_range_evaluator = self.reference_range_evaluator_cls(
52
+ reference_range_collection_name, **options
52
53
  )
53
54
  try:
54
55
  reference_range_evaluator.validate_reportable_fields()