climate-ref 0.6.6__py3-none-any.whl → 0.7.0__py3-none-any.whl

climate_ref/models/mixins.py

@@ -0,0 +1,144 @@
+"""Model mixins for shared functionality"""
+
+import datetime
+from typing import TYPE_CHECKING, ClassVar
+
+from loguru import logger
+from sqlalchemy import Column, Text, func
+from sqlalchemy.orm import Mapped, mapped_column
+
+if TYPE_CHECKING:
+    from climate_ref_core.pycmec.controlled_vocabulary import CV, Dimension
+
+
+class CreatedUpdatedMixin:
+    """
+    Mixin for models that have a created_at and updated_at fields
+    """
+
+    created_at: Mapped[datetime.datetime] = mapped_column(server_default=func.now())
+    """
+    When the dataset was added to the database
+    """
+
+    updated_at: Mapped[datetime.datetime] = mapped_column(
+        server_default=func.now(), onupdate=func.now(), index=True
+    )
+    """
+    When the dataset was updated.
+    """
+
+
+class DimensionMixin:
+    """
+    Mixin that adds controlled vocabulary dimension support to a model
+
+    This mixin provides methods and properties for managing CV dimensions
+    on database models. Dimensions are stored as individual indexed columns
+    that are registered at runtime based on the controlled vocabulary.
+
+    Classes using this mixin must:
+    - Define _cv_dimensions as a ClassVar[list[str]] = []
+    - Have a __tablename__ attribute (SQLAlchemy requirement)
+    """
+
+    _cv_dimensions: ClassVar[list[str]]
+
+    @property
+    def dimensions(self) -> dict[str, str]:
+        """
+        Get the non-null dimensions and their values
+
+        Any changes to the resulting dictionary are not reflected in the object
+
+        Returns
+        -------
+            Collection of dimension names and their values
+        """
+        dims = {}
+        for key in self._cv_dimensions:
+            value = getattr(self, key)
+            if value is not None:
+                dims[key] = value
+        return dims
+
+    @staticmethod
+    def build_dimension_column(dimension: "Dimension") -> Column[str]:
+        """
+        Create a column representing a CV dimension
+
+        These columns are not automatically generated with alembic revisions.
+        Any changes to this functionality likely require a manual database migration
+        of the existing columns.
+
+        Parameters
+        ----------
+        dimension
+            Dimension definition to create the column for.
+            Currently only the "name" field is being used.
+
+        Returns
+        -------
+            An instance of a sqlalchemy Column
+
+            This doesn't create the column in the database,
+            but enables the ORM to access it.
+        """
+        return Column(
+            dimension.name,
+            Text,
+            index=True,
+            nullable=True,
+            info={"skip_autogenerate": True},
+        )
+
+    @classmethod
+    def register_cv_dimensions(cls, cv: "CV") -> None:
+        """
+        Register the dimensions supplied in the controlled vocabulary
+
+        This has to be done at run-time to support custom CVs.
+        Any extra columns already in the database, but not in the CV are ignored.
+
+        Parameters
+        ----------
+        cv
+            Controlled vocabulary being used by the application.
+            This controlled vocabulary contains the definitions of the dimensions that can be used.
+        """
+        model_name = cls.__name__
+
+        for dimension in cv.dimensions:
+            target_attribute = dimension.name
+            if target_attribute in cls._cv_dimensions:
+                continue
+
+            cls._cv_dimensions.append(target_attribute)
+            logger.debug(f"Registered {model_name} dimension: {target_attribute}")
+
+            if hasattr(cls, target_attribute):
+                # This should only occur in test suite as we don't support removing dimensions at runtime
+                logger.warning(f"Column attribute already exists on {model_name}. Ignoring")
+            else:
+                setattr(cls, target_attribute, cls.build_dimension_column(dimension))
+
+    @classmethod
+    def _reset_cv_dimensions(cls) -> None:
+        """
+        Remove any previously registered dimensions
+
+        Used by the test suite and should not be called at runtime.
+
+        This doesn't remove any previous column definitions due to a limitation that columns in
+        declarative classes cannot be removed.
+        This means that `hasattr(cls, "old_attribute")`
+        will still return True after resetting, but the values will not be included in any executions.
+        """
+        model_name = cls.__name__
+        logger.warning(f"Removing {model_name} dimensions: {cls._cv_dimensions}")
+
+        keys = list(cls._cv_dimensions)
+        for key in keys:
+            cls._cv_dimensions.remove(key)
+
+        assert not len(cls._cv_dimensions)

climate_ref/models/provider.py

@@ -2,7 +2,8 @@ from typing import TYPE_CHECKING
 
 from sqlalchemy.orm import Mapped, mapped_column, relationship
 
-from climate_ref.models.base import Base, CreatedUpdatedMixin
+from .base import Base
+from .mixins import CreatedUpdatedMixin
 
 if TYPE_CHECKING:
     from climate_ref.models.diagnostic import Diagnostic

climate_ref/provider_registry.py

@@ -14,6 +14,8 @@ from loguru import logger
 
 from climate_ref.config import Config
 from climate_ref.database import Database
+from climate_ref.models import Diagnostic as DiagnosticModel
+from climate_ref.models import Provider as ProviderModel
 from climate_ref_core.diagnostics import Diagnostic
 from climate_ref_core.providers import DiagnosticProvider, import_provider
 
@@ -29,10 +31,8 @@ def _register_provider(db: Database, provider: DiagnosticProvider) -> None:
     provider
         DiagnosticProvider instance
     """
-    from climate_ref.models import Diagnostic, Provider
-
     provider_model, created = db.get_or_create(
-        Provider,
+        ProviderModel,
         slug=provider.slug,
         defaults={
             "name": provider.name,
@@ -46,7 +46,7 @@ def _register_provider(db: Database, provider: DiagnosticProvider) -> None:
 
     for diagnostic in provider.diagnostics():
         diagnostic_model, created = db.get_or_create(
-            Diagnostic,
+            DiagnosticModel,
             slug=diagnostic.slug,
             provider_id=provider_model.id,
             defaults={

climate_ref/slurm.py

@@ -10,14 +10,14 @@ class SlurmChecker:
 
     def __init__(self, intest: bool = False) -> None:
         if HAS_REAL_SLURM:
-            import pyslurm  # type: ignore
+            import pyslurm  # type: ignore # noqa: PLC0415
 
             self.slurm_association: dict[int, Any] | None = pyslurm.db.Associations.load()
             self.slurm_partition: dict[str, Any] | None = pyslurm.Partitions.load()
             self.slurm_qos: dict[str, Any] | None = pyslurm.qos().get()
             self.slurm_node: dict[str, Any] | None = pyslurm.Nodes.load()
         elif intest:
-            import pyslurm
+            import pyslurm  # noqa: PLC0415
 
             self.slurm_association = pyslurm.db.Associations.load()  # dict [num -> Association]
             self.slurm_partition = pyslurm.Partitions.load()  # collection

climate_ref/testing.py

@@ -27,7 +27,7 @@ def _determine_test_directory() -> Path | None:
 
 
 TEST_DATA_DIR = _determine_test_directory()
-SAMPLE_DATA_VERSION = "v0.7.2"
+SAMPLE_DATA_VERSION = "v0.7.4"
 
 
 def fetch_sample_data(force_cleanup: bool = False, symlink: bool = False) -> None:

{climate_ref-0.6.6.dist-info → climate_ref-0.7.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: climate-ref
-Version: 0.6.6
+Version: 0.7.0
 Summary: Application which runs the CMIP Rapid Evaluation Framework
 Author-email: Jared Lewis <jared.lewis@climate-resource.com>, Mika Pflueger <mika.pflueger@climate-resource.com>, Bouwe Andela <b.andela@esciencecenter.nl>, Jiwoo Lee <lee1043@llnl.gov>, Min Xu <xum1@ornl.gov>, Nathan Collier <collierno@ornl.gov>, Dora Hegedus <dora.hegedus@stfc.ac.uk>
 License-Expression: Apache-2.0

climate_ref-0.7.0.dist-info/RECORD

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climate_ref-0.6.6.dist-info/RECORD

@@ -1,55 +0,0 @@
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