claude-mpm 4.15.6__py3-none-any.whl → 4.21.0__py3-none-any.whl

claude_mpm/cli/commands/mpm_init.py

@@ -1,2008 +0,0 @@
-"""
-MPM-Init Command - Initialize projects for optimal Claude Code and Claude MPM success.
-
-This command delegates to the Agentic Coder Optimizer agent to establish clear,
-single-path project standards for documentation, tooling, and workflows.
-
-Enhanced with AST inspection capabilities for generating comprehensive developer
-documentation with code structure analysis.
-"""
-
-import contextlib
-import subprocess
-import sys
-from pathlib import Path
-from typing import Any, Dict, List, Optional
-
-import click
-from rich.console import Console
-from rich.panel import Panel
-from rich.progress import Progress, SpinnerColumn, TextColumn
-from rich.prompt import Prompt
-
-from claude_mpm.core.enums import OperationResult
-from claude_mpm.core.logging_utils import get_logger
-
-# Import new services
-from claude_mpm.services.project.archive_manager import ArchiveManager
-from claude_mpm.services.project.documentation_manager import DocumentationManager
-from claude_mpm.services.project.enhanced_analyzer import EnhancedProjectAnalyzer
-from claude_mpm.services.project.project_organizer import ProjectOrganizer
-from claude_mpm.utils.display_helper import DisplayHelper
-
-logger = get_logger(__name__)
-console = Console()
-
-
-class MPMInitCommand:
-    """Initialize projects for optimal Claude Code and Claude MPM usage."""
-
-    def __init__(self, project_path: Optional[Path] = None):
-        """Initialize the MPM-Init command."""
-        self.project_path = project_path or Path.cwd()
-        self.claude_mpm_script = self._find_claude_mpm_script()
-
-        # Initialize service components
-        self.doc_manager = DocumentationManager(self.project_path)
-        self.organizer = ProjectOrganizer(self.project_path)
-        self.archive_manager = ArchiveManager(self.project_path)
-        self.analyzer = EnhancedProjectAnalyzer(self.project_path)
-        self.display = DisplayHelper(console)
-
-    def initialize_project(
-        self,
-        project_type: Optional[str] = None,
-        framework: Optional[str] = None,
-        force: bool = False,
-        verbose: bool = False,
-        ast_analysis: bool = True,
-        update_mode: bool = False,
-        review_only: bool = False,
-        organize_files: bool = False,
-        preserve_custom: bool = True,
-        skip_archive: bool = False,
-        dry_run: bool = False,
-        quick_update: bool = False,
-        catchup: bool = False,
-        non_interactive: bool = False,
-        days: int = 30,
-        export: Optional[str] = None,
-    ) -> Dict:
-        """
-        Initialize project with Agentic Coder Optimizer standards.
-
-        Args:
-            project_type: Type of project (web, api, cli, library, etc.)
-            framework: Specific framework if applicable
-            force: Force initialization even if project already configured
-            verbose: Show detailed output
-            ast_analysis: Enable AST analysis for enhanced documentation
-            update_mode: Update existing CLAUDE.md instead of recreating
-            review_only: Review project state without making changes
-            organize_files: Organize misplaced files into proper directories
-            preserve_custom: Preserve custom sections when updating
-            skip_archive: Skip archiving existing files
-            dry_run: Show what would be done without making changes
-            quick_update: Perform lightweight update based on recent git activity
-            catchup: Show recent commit history from all branches for PM context
-            non_interactive: Non-interactive mode - display report only without prompting
-            days: Number of days for git history analysis (7, 14, 30, 60, or 90)
-            export: Export report to file (path or "auto" for default location)
-
-        Returns:
-            Dict containing initialization results
-        """
-        try:
-            # Determine initialization mode
-            claude_md = self.project_path / "CLAUDE.md"
-            has_existing = claude_md.exists()
-
-            if review_only:
-                return self._run_review_mode()
-
-            if catchup:
-                data = self._catchup()
-                self._display_catchup(data)
-                return {
-                    "status": OperationResult.SUCCESS,
-                    "mode": "catchup",
-                    "catchup_data": data,
-                }
-
-            if quick_update:
-                return self._run_quick_update_mode(
-                    days=days,
-                    non_interactive=non_interactive,
-                    export=export,
-                )
-
-            if has_existing and not force and not update_mode:
-                # Auto-select update mode if organize_files or dry_run is specified
-                if organize_files or dry_run:
-                    update_mode = True
-                    console.print(
-                        "[cyan]Auto-selecting update mode for organization tasks.[/cyan]\n"
-                    )
-                else:
-                    # Offer update mode
-                    console.print(
-                        "[yellow]⚠️  Project already has CLAUDE.md file.[/yellow]\n"
-                    )
-
-                    # Show current documentation analysis
-                    doc_analysis = self.doc_manager.analyze_existing_content()
-                    self._display_documentation_status(doc_analysis)
-
-                    # Ask user what to do
-                    action = self._prompt_update_action()
-
-                    if action == "update":
-                        update_mode = True
-                    elif action == "recreate":
-                        force = True
-                    elif action == "review":
-                        return self._run_review_mode()
-                    else:
-                        return {
-                            "status": OperationResult.CANCELLED,
-                            "message": "Initialization cancelled",
-                        }
-
-            # Handle dry-run mode
-            if dry_run:
-                return self._run_dry_run_mode(organize_files, has_existing)
-
-            # Run pre-initialization checks
-            if not review_only:
-                pre_check_result = self._run_pre_initialization_checks(
-                    organize_files, skip_archive, has_existing
-                )
-                if pre_check_result.get("status") == OperationResult.ERROR:
-                    return pre_check_result
-
-            # Build the delegation prompt
-            if update_mode:
-                prompt = self._build_update_prompt(
-                    project_type, framework, ast_analysis, preserve_custom
-                )
-            else:
-                prompt = self._build_initialization_prompt(
-                    project_type, framework, ast_analysis
-                )
-
-            # Show appropriate plan based on mode
-            if update_mode:
-                self._show_update_plan(ast_analysis, preserve_custom)
-            else:
-                self._show_initialization_plan(ast_analysis)
-
-            # Execute via claude-mpm run command
-            with Progress(
-                SpinnerColumn(),
-                TextColumn("[progress.description]{task.description}"),
-                console=console,
-            ) as progress:
-                task_desc = (
-                    "[cyan]Updating documentation..."
-                    if update_mode
-                    else "[cyan]Delegating to Agentic Coder Optimizer..."
-                )
-                task = progress.add_task(task_desc, total=None)
-
-                # Run the initialization through subprocess
-                result = self._run_initialization(prompt, verbose, update_mode)
-
-                complete_desc = (
-                    "[green]✓ Update complete"
-                    if update_mode
-                    else "[green]✓ Initialization complete"
-                )
-                progress.update(task, description=complete_desc)
-
-            # Post-processing for update mode
-            if update_mode and result.get("status") == OperationResult.SUCCESS:
-                self._handle_update_post_processing()
-
-            return result
-
-        except Exception as e:
-            logger.error(f"Failed to initialize project: {e}")
-            console.print(f"[red]❌ Error: {e}[/red]")
-            return {"status": OperationResult.ERROR, "message": str(e)}
-
-    def _find_claude_mpm_script(self) -> Path:
-        """Find the claude-mpm script location."""
-        # Try to find claude-mpm in the project scripts directory first
-        project_root = Path(__file__).parent.parent.parent.parent.parent
-        script_path = project_root / "scripts" / "claude-mpm"
-        if script_path.exists():
-            return script_path
-        # Otherwise assume it's in PATH
-        return Path("claude-mpm")
-
-    def _build_initialization_prompt(
-        self,
-        project_type: Optional[str] = None,
-        framework: Optional[str] = None,
-        ast_analysis: bool = True,
-    ) -> str:
-        """Build the initialization prompt for the agent."""
-        base_prompt = f"""Please delegate this task to the Agentic Coder Optimizer agent:
-
-Initialize this project for optimal use with Claude Code and Claude MPM.
-
-Project Path: {self.project_path}
-"""
-
-        if project_type:
-            base_prompt += f"Project Type: {project_type}\n"
-
-        if framework:
-            base_prompt += f"Framework: {framework}\n"
-
-        base_prompt += """
-Please perform the following initialization tasks:
-
-1. **Analyze Current State**:
-   - Scan project structure and existing configurations
-   - Identify project type, language, and frameworks
-   - Check for existing documentation and tooling
-
-2. **Create/Update CLAUDE.md**:
-   - Project overview and purpose
-   - Architecture and key components
-   - Development guidelines
-   - ONE clear way to: build, test, deploy, lint, format
-   - Links to all relevant documentation
-   - Common tasks and workflows
-
-3. **Establish Single-Path Standards**:
-   - ONE command for each operation (build, test, lint, etc.)
-   - Clear documentation of THE way to do things
-   - Remove ambiguity in workflows
-
-4. **Configure Development Tools**:
-   - Set up or verify linting configuration
-   - Configure code formatting standards
-   - Establish testing framework
-   - Add pre-commit hooks if needed
-
-5. **Create Project Structure Documentation**:
-   - Document folder organization
-   - Explain where different file types belong
-   - Provide examples of proper file placement
-
-6. **Set Up GitHub Integration** (if applicable):
-   - Create/update .github/workflows
-   - Add issue and PR templates
-   - Configure branch protection rules documentation
-
-7. **Initialize Memory System**:
-   - Create .claude-mpm/memories/ directory
-   - Add initial memory files for key project knowledge
-   - Document memory usage patterns
-
-8. **Generate Quick Start Guide**:
-   - Step-by-step setup instructions
-   - Common commands reference
-   - Troubleshooting guide
-"""
-
-        if ast_analysis:
-            base_prompt += """
-9. **Perform AST Analysis** (using Code Analyzer agent if needed):
-   - Parse code files to extract structure (classes, functions, methods)
-   - Generate comprehensive API documentation
-   - Create code architecture diagrams
-   - Document function signatures and dependencies
-   - Extract docstrings and inline comments
-   - Map code relationships and inheritance hierarchies
-   - Generate developer documentation with:
-     * Module overview and purpose
-     * Class hierarchies and relationships
-     * Function/method documentation
-     * Type annotations and parameter descriptions
-     * Code complexity metrics
-     * Dependency graphs
-   - Create DEVELOPER.md with technical architecture details
-   - Add CODE_STRUCTURE.md with AST-derived insights
-"""
-
-        base_prompt += """
-
-10. **Holistic CLAUDE.md Organization** (CRITICAL - Do this LAST):
-   After completing all initialization tasks, take a holistic look at the CLAUDE.md file and:
-
-   a) **Reorganize Content by Priority**:
-      - CRITICAL instructions (security, data handling, core business rules) at the TOP
-      - Project overview and purpose
-      - Key architectural decisions and constraints
-      - Development guidelines and standards
-      - Common tasks and workflows
-      - Links to additional documentation
-      - Nice-to-have or optional information at the BOTTOM
-
-   b) **Rank Instructions by Importance**:
-      - Use clear markers:
-        * 🔴 CRITICAL: Security, data handling, breaking changes, core business rules
-        * 🟡 IMPORTANT: Key workflows, architecture decisions, performance requirements
-        * 🟢 STANDARD: Common operations, coding standards, best practices
-        * ⚪ OPTIONAL: Nice-to-have features, experimental code, future considerations
-      - Group related instructions together
-      - Ensure no contradictory instructions exist
-      - Remove redundant or outdated information
-      - Add a "Priority Index" at the top listing all CRITICAL and IMPORTANT items
-
-   c) **Optimize for AI Agent Understanding**:
-      - Use consistent formatting and structure
-      - Provide clear examples for complex instructions
-      - Include "WHY" explanations for critical rules
-      - Add quick reference sections for common operations
-      - Ensure instructions are actionable and unambiguous
-
-   d) **Validate Completeness**:
-      - Ensure ALL critical project knowledge is captured
-      - Verify single-path principle (ONE way to do each task)
-      - Check that all referenced documentation exists
-      - Confirm all tools and dependencies are documented
-      - Test that a new AI agent could understand the project from CLAUDE.md alone
-
-   e) **Add Meta-Instructions Section**:
-      - Include a section about how to maintain CLAUDE.md
-      - Document when and how to update instructions
-      - Provide guidelines for instruction priority levels
-      - Add a changelog or last-updated timestamp
-
-   f) **Follow This CLAUDE.md Template Structure**:
-      ```markdown
-      # Project Name - CLAUDE.md
-
-      ## 🎯 Priority Index
-      ### 🔴 CRITICAL Instructions
-      - [List all critical items with links to their sections]
-
-      ### 🟡 IMPORTANT Instructions
-      - [List all important items with links to their sections]
-
-      ## 📋 Project Overview
-      [Brief description and purpose]
-
-      ## 🔴 CRITICAL: Security & Data Handling
-      [Critical security rules and data handling requirements]
-
-      ## 🔴 CRITICAL: Core Business Rules
-      [Non-negotiable business logic and constraints]
-
-      ## 🟡 IMPORTANT: Architecture & Design
-      [Key architectural decisions and patterns]
-
-      ## 🟡 IMPORTANT: Development Workflow
-      ### ONE Way to Build
-      ### ONE Way to Test
-      ### ONE Way to Deploy
-
-      ## 🟢 STANDARD: Coding Guidelines
-      [Standard practices and conventions]
-
-      ## 🟢 STANDARD: Common Tasks
-      [How to perform routine operations]
-
-      ## 📚 Documentation Links
-      [Links to additional resources]
-
-      ## ⚪ OPTIONAL: Future Enhancements
-      [Nice-to-have features and ideas]
-
-      ## 📝 Meta: Maintaining This Document
-      - Last Updated: [timestamp]
-      - Update Frequency: [when to update]
-      - Priority Guidelines: [how to assign priorities]
-      ```
-
-Please ensure all documentation is clear, concise, and optimized for AI agents to understand and follow.
-Focus on establishing ONE clear way to do ANYTHING in the project.
-The final CLAUDE.md should be a comprehensive, well-organized guide that any AI agent can follow to work effectively on this project.
-"""
-
-        return base_prompt
-
-    def _build_claude_mpm_command(self, verbose: bool) -> List[str]:
-        """Build the claude-mpm run command with appropriate arguments."""
-        cmd = [str(self.claude_mpm_script)]
-
-        # Add top-level flags that go before 'run' subcommand
-        cmd.append("--no-check-dependencies")
-
-        # Now add the run subcommand
-        cmd.append("run")
-
-        # Add non-interactive mode
-        # We'll pass the prompt via stdin instead of -i flag
-        cmd.append("--non-interactive")
-
-        # Add verbose flag if requested (run subcommand argument)
-        if verbose:
-            cmd.append("--verbose")
-
-        return cmd
-
-    def _display_documentation_status(self, analysis: Dict) -> None:
-        """Display current documentation status."""
-        self.display.display_documentation_status(analysis)
-
-    def _prompt_update_action(self) -> str:
-        """Prompt user for update action."""
-        console.print("\n[bold]How would you like to proceed?[/bold]\n")
-
-        choices = {
-            "1": ("update", "Update existing CLAUDE.md (preserves custom content)"),
-            "2": ("recreate", "Recreate CLAUDE.md from scratch"),
-            "3": ("review", "Review project state without changes"),
-            "4": ("cancel", "Cancel operation"),
-        }
-
-        for key, (_, desc) in choices.items():
-            console.print(f"  [{key}] {desc}")
-
-        choice = Prompt.ask(
-            "\nSelect option", choices=list(choices.keys()), default="1"
-        )
-        return choices[choice][0]
-
-    def _run_review_mode(self) -> Dict:
-        """Run review mode to analyze project without changes."""
-        console.print("\n[bold cyan]🔍 Project Review Mode[/bold cyan]\n")
-
-        with Progress(
-            SpinnerColumn(),
-            TextColumn("[progress.description]{task.description}"),
-            console=console,
-        ) as progress:
-            # Analyze project structure
-            task = progress.add_task("[cyan]Analyzing project structure...", total=None)
-            structure_report = self.organizer.verify_structure()
-            progress.update(task, description="[green]✓ Structure analysis complete")
-
-            # Analyze documentation
-            task = progress.add_task("[cyan]Analyzing documentation...", total=None)
-            doc_analysis = self.doc_manager.analyze_existing_content()
-            progress.update(
-                task, description="[green]✓ Documentation analysis complete"
-            )
-
-            # Analyze git history
-            if self.analyzer.is_git_repo:
-                task = progress.add_task("[cyan]Analyzing git history...", total=None)
-                git_analysis = self.analyzer.analyze_git_history()
-                progress.update(task, description="[green]✓ Git analysis complete")
-            else:
-                git_analysis = None
-
-            # Detect project state
-            task = progress.add_task("[cyan]Detecting project state...", total=None)
-            project_state = self.analyzer.detect_project_state()
-            progress.update(task, description="[green]✓ State detection complete")
-
-        # Display comprehensive report
-        self._display_review_report(
-            structure_report, doc_analysis, git_analysis, project_state
-        )
-
-        return {
-            "status": OperationResult.SUCCESS,
-            "mode": "review",
-            "structure_report": structure_report,
-            "documentation_analysis": doc_analysis,
-            "git_analysis": git_analysis,
-            "project_state": project_state,
-        }
-
-    def _display_review_report(
-        self, structure: Dict, docs: Dict, git: Optional[Dict], state: Dict
-    ) -> None:
-        """Display comprehensive review report."""
-        self.display.display_header("PROJECT REVIEW REPORT")
-
-        # Project State
-        state_data = {"Phase": state.get("phase", "unknown")}
-        if state.get("indicators"):
-            state_data["Indicators"] = state["indicators"][:5]
-        self.display.display_report_section("📊 Project State", state_data)
-
-        # Structure Report
-        structure_data = {
-            "Existing directories": len(structure.get("exists", [])),
-            "Missing directories": len(structure.get("missing", [])),
-        }
-        if structure.get("issues"):
-            structure_data["Issues found"] = len(structure["issues"])
-            structure_data["Issues"] = structure["issues"][:3]
-        self.display.display_report_section("📁 Project Structure", structure_data)
-
-        # Documentation Report
-        self.display.display_section_title("📚 Documentation Status")
-        if docs.get("exists"):
-            console.print(f"  CLAUDE.md: Found ({docs.get('size', 0):,} chars)")
-            console.print(f"  Sections: {len(docs.get('sections', []))}")
-            console.print(
-                f"  Priority markers: {'Yes' if docs.get('has_priority_markers') else 'No'}"
-            )
-        else:
-            console.print("  CLAUDE.md: Not found")
-
-        # Git Analysis
-        if git and git.get("git_available"):
-            git_metrics = {
-                "Commits": len(git.get("recent_commits", [])),
-                "Authors": git.get("authors", {}).get("total_authors", 0),
-                "Changed files": git.get("changed_files", {}).get("total_files", 0),
-            }
-
-            if git.get("branch_info"):
-                branch_info = git["branch_info"]
-                git_metrics["Current branch"] = branch_info.get(
-                    "current_branch", "unknown"
-                )
-
-            self.display.display_metrics_section(
-                "📈 Recent Activity (30 days)", git_metrics
-            )
-
-            if git.get("branch_info", {}).get("has_uncommitted_changes"):
-                self.display.display_metric_row(
-                    "⚠️  Uncommitted changes",
-                    f"{git['branch_info'].get('uncommitted_files', 0)} files",
-                    warning=True,
-                )
-
-        # Recommendations
-        if state.get("recommendations"):
-            self.display.display_recommendations(state["recommendations"])
-
-        self.display.display_separator()
-
-    def _run_quick_update_mode(
-        self,
-        days: int = 30,
-        non_interactive: bool = False,
-        export: Optional[str] = None,
-    ) -> Dict:
-        """Run quick update mode - lightweight update based on recent git activity."""
-        console.print("\n[bold cyan]⚡ Quick Update Mode[/bold cyan]\n")
-        console.print(
-            f"[dim]Analyzing recent git activity ({days} days) for lightweight documentation update...[/dim]\n"
-        )
-
-        if not self.analyzer.is_git_repo:
-            console.print(
-                "[yellow]⚠️  Not a git repository. Quick update requires git.[/yellow]"
-            )
-            console.print(
-                "[dim]Tip: Use `/mpm-init --review` for non-git projects.[/dim]\n"
-            )
-            return {
-                "status": OperationResult.ERROR,
-                "message": "Quick update requires a git repository",
-            }
-
-        claude_md = self.project_path / "CLAUDE.md"
-        if not claude_md.exists():
-            console.print(
-                "[yellow]⚠️  CLAUDE.md not found. Quick update requires existing documentation.[/yellow]"
-            )
-            console.print(
-                "[dim]Tip: Use `/mpm-init` to create initial documentation.[/dim]\n"
-            )
-            return {
-                "status": OperationResult.ERROR,
-                "message": "Quick update requires existing CLAUDE.md",
-            }
-
-        with Progress(
-            SpinnerColumn(),
-            TextColumn("[progress.description]{task.description}"),
-            console=console,
-        ) as progress:
-            # Analyze git history
-            task = progress.add_task(
-                f"[cyan]Analyzing git history ({days} days)...", total=None
-            )
-            git_analysis = self.analyzer.analyze_git_history(days_back=days)
-            progress.update(task, description="[green]✓ Git analysis complete")
-
-            # Analyze current documentation
-            task = progress.add_task(
-                "[cyan]Checking documentation status...", total=None
-            )
-            doc_analysis = self.doc_manager.analyze_existing_content()
-            progress.update(task, description="[green]✓ Documentation analyzed")
-
-        # Generate activity report
-        activity_report = self._generate_activity_report(
-            git_analysis, doc_analysis, days
-        )
-
-        # Display the report
-        self._display_activity_report(activity_report)
-
-        # Export report if requested
-        if export:
-            export_path = self._export_activity_report(activity_report, export)
-            console.print(f"\n[green]✅ Report exported to: {export_path}[/green]")
-
-        # Handle non-interactive mode
-        if non_interactive:
-            console.print(
-                "\n[cyan]ℹ️  Non-interactive mode: Report displayed, no changes made.[/cyan]"
-            )
-            return {
-                "status": OperationResult.SUCCESS,
-                "mode": "quick_update",
-                "activity_report": activity_report,
-                "changes_made": False,
-                "non_interactive": True,
-            }
-
-        # Offer to append activity notes to CLAUDE.md
-        console.print("\n[bold]Update Options:[/bold]")
-        console.print("  [1] Append activity summary to CLAUDE.md")
-        console.print("  [2] Display report only (no changes)")
-        console.print("  [3] Cancel")
-
-        from rich.prompt import Prompt
-
-        choice = Prompt.ask("\nSelect option", choices=["1", "2", "3"], default="2")
-
-        if choice == "1":
-            # Append activity notes
-            self._append_activity_notes(claude_md, activity_report)
-            console.print("\n[green]✅ Activity notes appended to CLAUDE.md[/green]")
-
-            # Archive the update
-            self.archive_manager.auto_archive_before_update(
-                claude_md, update_reason="Quick update - recent activity summary"
-            )
-
-            return {
-                "status": OperationResult.SUCCESS,
-                "mode": "quick_update",
-                "activity_report": activity_report,
-                "changes_made": True,
-            }
-        if choice == "2":
-            console.print("\n[cyan]Report generated - no changes made[/cyan]")
-            return {
-                "status": OperationResult.SUCCESS,
-                "mode": "quick_update",
-                "activity_report": activity_report,
-                "changes_made": False,
-            }
-        console.print("\n[yellow]Quick update cancelled[/yellow]")
-        return {
-            "status": OperationResult.CANCELLED,
-            "message": "Quick update cancelled",
-        }
-
-    def _catchup(self) -> Dict[str, Any]:
-        """Get recent commit history for PM context.
-
-        Returns:
-            Dict containing commit history and contributor stats
-        """
-        from collections import Counter
-        from datetime import datetime
-        from subprocess import run
-
-        try:
-            # Get last 25 commits from all branches with author info
-            result = run(
-                ["git", "log", "--all", "--format=%h|%an|%ai|%s", "-25"],
-                capture_output=True,
-                text=True,
-                check=True,
-                cwd=str(self.project_path),
-            )
-
-            commits = []
-            authors = []
-
-            for line in result.stdout.strip().split("\n"):
-                if not line:
-                    continue
-
-                parts = line.split("|", 3)
-                if len(parts) == 4:
-                    hash_val, author, date_str, message = parts
-
-                    # Parse date
-                    try:
-                        dt = datetime.fromisoformat(date_str.replace(" ", "T", 1))
-                        date_display = dt.strftime("%Y-%m-%d %H:%M")
-                    except Exception:
-                        date_display = date_str[:16]
-
-                    commits.append(
-                        {
-                            "hash": hash_val,
-                            "author": author,
-                            "date": date_display,
-                            "message": message,
-                        }
-                    )
-                    authors.append(author)
-
-            # Calculate contributor stats
-            author_counts = Counter(authors)
-
-            return {
-                "commits": commits,
-                "total_commits": len(commits),
-                "contributors": dict(author_counts),
-                "contributor_count": len(author_counts),
-            }
-
-        except Exception as e:
-            console.print(f"[yellow]Could not retrieve commit history: {e}[/yellow]")
-            return {
-                "commits": [],
-                "total_commits": 0,
-                "contributors": {},
-                "contributor_count": 0,
-                "error": str(e),
-            }
-
-    def _display_catchup(self, data: Dict[str, Any]) -> None:
-        """Display catchup information to console.
-
-        Args:
-            data: Commit history data from _catchup()
-        """
-        from rich.panel import Panel
-        from rich.table import Table
-
-        if data.get("error"):
-            console.print(
-                Panel(
-                    "[yellow]Not a git repository or no commits found[/yellow]",
-                    title="⚠️ Catchup Status",
-                    border_style="yellow",
-                )
-            )
-            return
-
-        # Display contributor summary
-        if data["contributors"]:
-            console.print("\n[bold cyan]👥 Active Contributors[/bold cyan]")
-            for author, count in sorted(
-                data["contributors"].items(), key=lambda x: x[1], reverse=True
-            ):
-                console.print(
-                    f"  • [green]{author}[/green]: {count} commit{'s' if count != 1 else ''}"
-                )
-
-        # Display commit history table
-        if data["commits"]:
-            console.print(
-                f"\n[bold cyan]📝 Last {data['total_commits']} Commits[/bold cyan]"
-            )
-
-            table = Table(
-                show_header=True, header_style="bold magenta", border_style="dim"
-            )
-            table.add_column("#", style="dim", width=3)
-            table.add_column("Hash", style="yellow", width=8)
-            table.add_column("Author", style="green", width=20)
-            table.add_column("Date", style="cyan", width=16)
-            table.add_column("Message", style="white")
-
-            for idx, commit in enumerate(data["commits"], 1):
-                # Truncate message if too long
-                msg = commit["message"]
-                if len(msg) > 80:
-                    msg = msg[:77] + "..."
-
-                # Truncate author if too long
-                author = commit["author"]
-                if len(author) > 18:
-                    author = author[:18] + "..."
-
-                table.add_row(str(idx), commit["hash"], author, commit["date"], msg)
-
-            console.print(table)
-
-        # Display PM recommendations
-        console.print("\n[bold cyan]💡 PM Recommendations[/bold cyan]")
-        console.print(
-            f"  • Total activity: {data['total_commits']} commits from {data['contributor_count']} contributor{'s' if data['contributor_count'] != 1 else ''}"
-        )
-        console.print("  • Review commit messages for recent project context")
-        console.print("  • Identify development patterns and focus areas")
-        console.print("  • Use this context to inform current work priorities\n")
-
-    def _generate_activity_report(
-        self, git_analysis: Dict, doc_analysis: Dict, days: int = 30
-    ) -> Dict:
-        """Generate activity report from git analysis and documentation status."""
-        from datetime import datetime, timezone
-
-        report = {
-            "period": f"Last {days} days",
-            "generated_at": datetime.now(timezone.utc).isoformat(),
-            "summary": {},
-            "recommendations": [],
-        }
-
-        # Git activity summary
-        if git_analysis.get("git_available"):
-            recent_commits = git_analysis.get("recent_commits", [])
-            changed_files = git_analysis.get("changed_files", {})
-            authors = git_analysis.get("authors", {})
-            branch_info = git_analysis.get("branch_info", {})
-
-            report["summary"] = {
-                "total_commits": len(recent_commits),
-                "total_authors": authors.get("total_authors", 0),
-                "files_changed": changed_files.get("total_files", 0),
-                "current_branch": branch_info.get("current_branch", "unknown"),
-                "has_uncommitted": branch_info.get("has_uncommitted_changes", False),
-                "uncommitted_count": branch_info.get("uncommitted_files", 0),
-            }
-
-            # Recent commits (last 10)
-            report["recent_commits"] = recent_commits[:10]
-
-            # Most changed files
-            most_changed = changed_files.get("most_changed", {})
-            report["hot_files"] = list(most_changed.items())[:10]
-
-            # Active branches
-            branches = branch_info.get("branches", [])
-            report["active_branches"] = [
-                b for b in branches if not b.startswith("remotes/")
-            ][:5]
-
-            # Generate recommendations
-            if len(recent_commits) > 20:
-                report["recommendations"].append(
-                    "High activity detected - consider updating architecture docs"
-                )
-
-            if changed_files.get("total_files", 0) > 50:
-                report["recommendations"].append(
-                    "Many files changed - review CLAUDE.md for accuracy"
-                )
-
-            if branch_info.get("has_uncommitted_changes"):
-                report["recommendations"].append(
-                    "Uncommitted changes detected - commit before updating docs"
-                )
-
-            # Check for documentation changes
-            doc_changes = git_analysis.get("documentation_changes", {})
-            if not doc_changes.get("has_recent_doc_changes"):
-                report["recommendations"].append(
-                    "No recent doc updates - CLAUDE.md may be outdated"
-                )
-
-        # Documentation freshness
-        if doc_analysis.get("exists"):
-            report["doc_status"] = {
-                "size": doc_analysis.get("size", 0),
-                "lines": doc_analysis.get("lines", 0),
-                "has_priority_index": doc_analysis.get("has_priority_index", False),
-                "has_priority_markers": doc_analysis.get("has_priority_markers", False),
-                "last_modified": doc_analysis.get("last_modified", "unknown"),
-            }
-
-            if not doc_analysis.get("has_priority_markers"):
-                report["recommendations"].append(
-                    "Add priority markers (🔴🟡🟢⚪) to CLAUDE.md"
-                )
-
-        return report
-
-    def _export_activity_report(self, report: Dict, export_path: str) -> Path:
-        """Export activity report to a markdown file."""
-        from datetime import datetime, timezone
-        from pathlib import Path
-
-        # Determine export path
-        if export_path == "auto":
-            # Generate default path with timestamp
-            timestamp = datetime.now(timezone.utc).strftime("%Y%m%d-%H%M%S")
-            reports_dir = self.project_path / "docs" / "reports"
-            reports_dir.mkdir(parents=True, exist_ok=True)
-            file_path = reports_dir / f"activity-report-{timestamp}.md"
-        else:
-            # Use provided path
-            file_path = Path(export_path)
-            if not file_path.is_absolute():
-                file_path = self.project_path / file_path
-            # Create parent directory if needed
-            file_path.parent.mkdir(parents=True, exist_ok=True)
-
-        # Generate markdown content
-        summary = report.get("summary", {})
-        timestamp = datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S")
-
-        content = f"""# Activity Report
-
-**Generated**: {timestamp}
-**Analysis Period**: {report.get('period', 'Last 30 days')}
-
-## Summary
-
-- **Total Commits**: {summary.get('total_commits', 0)}
-- **Active Contributors**: {summary.get('total_authors', 0)}
-- **Files Modified**: {summary.get('files_changed', 0)}
-- **Current Branch**: {summary.get('current_branch', 'unknown')}
-"""
-
-        if summary.get("has_uncommitted"):
-            content += f"- **⚠️  Uncommitted Changes**: {summary.get('uncommitted_count', 0)} files\n"
-
-        # Recent commits
-        recent_commits = report.get("recent_commits", [])
-        if recent_commits:
-            content += "\n## Recent Commits\n\n"
-            for commit in recent_commits[:10]:
-                content += (
-                    f"- `{commit['hash']}` {commit['message']} - {commit['author']}\n"
-                )
-
-        # Hot files
-        hot_files = report.get("hot_files", [])
-        if hot_files:
-            content += "\n## Most Changed Files\n\n"
-            for hot_file_path, changes in hot_files[:10]:
-                content += f"- `{hot_file_path}`: {changes} changes\n"
-
-        # Active branches
-        branches = report.get("active_branches", [])
-        if branches:
-            content += "\n## Active Branches\n\n"
-            for branch in branches:
-                marker = "→" if branch == summary.get("current_branch") else " "
-                content += f"{marker} {branch}\n"
-
-        # Documentation status
-        doc_status = report.get("doc_status", {})
-        if doc_status:
-            content += "\n## CLAUDE.md Status\n\n"
-            content += f"- **Size**: {doc_status.get('size', 0):,} characters\n"
-            content += f"- **Lines**: {doc_status.get('lines', 0)}\n"
-            content += f"- **Priority Markers**: {'✓' if doc_status.get('has_priority_markers') else '✗'}\n"
-            content += (
-                f"- **Last Modified**: {doc_status.get('last_modified', 'unknown')}\n"
-            )
-
-        # Recommendations
-        recommendations = report.get("recommendations", [])
-        if recommendations:
-            content += "\n## Recommendations\n\n"
-            for rec in recommendations:
-                content += f"- {rec}\n"
-
-        content += (
-            "\n---\n\n*Generated by Claude MPM `/mpm-init --quick-update --export`*\n"
-        )
-
-        # Write to file
-        file_path.write_text(content, encoding="utf-8")
-
-        return file_path
-
-    def _display_activity_report(self, report: Dict) -> None:
-        """Display the activity report in a formatted manner."""
-        self.display.display_header("RECENT ACTIVITY SUMMARY")
-
-        summary = report.get("summary", {})
-        period = report.get("period", "Last 30 days")
-
-        # Summary statistics
-        self.display.display_activity_summary(summary, period)
-
-        # Recent commits
-        recent_commits = report.get("recent_commits", [])
-        if recent_commits:
-            self.display.display_commit_list(recent_commits)
-
-        # Hot files
-        hot_files = report.get("hot_files", [])
-        if hot_files:
-            self.display.display_file_change_list(hot_files)
-
-        # Active branches
-        branches = report.get("active_branches", [])
-        current_branch = summary.get("current_branch", "unknown")
-        if branches:
-            self.display.display_branch_list(branches, current_branch)
-
-        # Documentation status
-        doc_status = report.get("doc_status", {})
-        if doc_status:
-            doc_metrics = {
-                "Size": f"{doc_status.get('size', 0):,} characters",
-                "Lines": doc_status.get("lines", 0),
-                "Priority markers": (
-                    "✓" if doc_status.get("has_priority_markers") else "✗"
-                ),
-                "Last modified": doc_status.get("last_modified", "unknown"),
-            }
-            self.display.display_metrics_section("📚 CLAUDE.md Status", doc_metrics)
-
-        # Recommendations
-        recommendations = report.get("recommendations", [])
-        if recommendations:
-            self.display.display_recommendations(recommendations)
-
-        self.display.display_separator()
-
-    def _append_activity_notes(self, claude_md_path: Path, report: Dict) -> None:
-        """Append activity notes to CLAUDE.md."""
-        from datetime import datetime, timezone
-
-        # Generate activity summary section
-        summary = report.get("summary", {})
-        timestamp = datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S")
-
-        activity_section = f"""
-
----
-
-## 📈 Recent Activity Summary
-
-**Last Updated**: {timestamp}
-**Analysis Period**: {report.get('period', 'Last 30 days')}
-
-### Activity Metrics
-- **Commits**: {summary.get('total_commits', 0)}
-- **Contributors**: {summary.get('total_authors', 0)}
-- **Files Changed**: {summary.get('files_changed', 0)}
-- **Current Branch**: {summary.get('current_branch', 'unknown')}
-"""
-
-        if summary.get("has_uncommitted"):
-            activity_section += f"- **⚠️  Uncommitted Changes**: {summary.get('uncommitted_count', 0)} files\n"
-
-        # Add recent commits
-        recent_commits = report.get("recent_commits", [])
-        if recent_commits:
-            activity_section += "\n### Recent Commits\n"
-            for commit in recent_commits[:5]:
-                activity_section += f"- `{commit['hash']}` {commit['message'][:60]} ({commit['author']})\n"
-
-        # Add hot files
-        hot_files = report.get("hot_files", [])
-        if hot_files:
-            activity_section += "\n### Most Active Files\n"
-            for file_path, changes in hot_files[:5]:
-                activity_section += f"- `{file_path}`: {changes} changes\n"
-
-        # Add recommendations
-        recommendations = report.get("recommendations", [])
-        if recommendations:
-            activity_section += "\n### 💡 Recommendations\n"
-            for rec in recommendations:
-                activity_section += f"- {rec}\n"
-
-        activity_section += "\n---\n"
-
-        # Append to file
-        with open(claude_md_path, "a", encoding="utf-8") as f:
-            f.write(activity_section)
-
-    def _run_dry_run_mode(self, organize_files: bool, has_existing: bool) -> Dict:
-        """Run dry-run mode to show what would be done without making changes."""
-        console.print("\n[bold cyan]🔍 Dry Run Mode - Preview Changes[/bold cyan]\n")
-
-        actions_planned = []
-
-        # Check what organization would do
-        if organize_files:
-            console.print("[bold]📁 File Organization Analysis:[/bold]")
-
-            # Get structure validation without making changes
-            validation = self.organizer.validate_structure()
-            if validation.get("issues"):
-                console.print("  [yellow]Files that would be organized:[/yellow]")
-                for issue in validation["issues"][:10]:
-                    actions_planned.append(
-                        f"Organize: {issue.get('description', 'Unknown')}"
-                    )
-                    console.print(f"    • {issue.get('description', 'Unknown')}")
-            else:
-                console.print("  ✅ Project structure is already well-organized")
-
-        # Check what documentation updates would occur
-        if has_existing:
-            console.print("\n[bold]📚 Documentation Updates:[/bold]")
-            doc_analysis = self.doc_manager.analyze_existing_content()
-
-            if not doc_analysis.get("has_priority_markers"):
-                actions_planned.append("Add priority markers (🔴🟡🟢⚪)")
-                console.print("  • Add priority markers (🔴🟡🟢⚪)")
-
-            if doc_analysis.get("outdated_patterns"):
-                actions_planned.append("Update outdated patterns")
-                console.print("  • Update outdated patterns")
-
-            if not doc_analysis.get("has_priority_index"):
-                actions_planned.append("Add priority index section")
-                console.print("  • Add priority index section")
-
-            # Archive would be created
-            actions_planned.append("Archive current CLAUDE.md to docs/_archive/")
-            console.print("  • Archive current CLAUDE.md to docs/_archive/")
-        else:
-            console.print("\n[bold]📚 Documentation Creation:[/bold]")
-            actions_planned.append("Create new CLAUDE.md with priority structure")
-            console.print("  • Create new CLAUDE.md with priority structure")
-
-        # General improvements
-        console.print("\n[bold]🔧 General Improvements:[/bold]")
-        actions_planned.extend(
-            [
-                "Update/create .gitignore if needed",
-                "Verify project structure compliance",
-                "Add memory system initialization",
-                "Set up single-path workflows",
-            ]
-        )
-        for action in actions_planned[-4:]:
-            console.print(f"  • {action}")
-
-        console.print(
-            f"\n[bold cyan]Summary: {len(actions_planned)} actions would be performed[/bold cyan]"
-        )
-        console.print("\n[dim]Run without --dry-run to execute these changes.[/dim]\n")
-
-        return {
-            "status": OperationResult.SUCCESS,
-            "mode": "dry_run",
-            "actions_planned": actions_planned,
-            "message": "Dry run completed - no changes made",
-        }
-
-    def _run_pre_initialization_checks(
-        self, organize_files: bool, skip_archive: bool, has_existing: bool
-    ) -> Dict:
-        """Run pre-initialization checks and preparations."""
-        checks_passed = []
-        warnings = []
-
-        # Run comprehensive project readiness check
-        ready, actions = self.organizer.ensure_project_ready(
-            auto_organize=organize_files,
-            safe_mode=True,  # Only perform safe operations by default
-        )
-
-        if actions:
-            checks_passed.extend(actions)
-
-        # Get structure validation report
-        validation = self.organizer.validate_structure()
-        if validation["warnings"]:
-            warnings.extend(validation["warnings"])
-        if validation["errors"]:
-            warnings.extend(validation["errors"])
-
-        # Show structure grade
-        if validation.get("grade"):
-            checks_passed.append(f"Structure validation: {validation['grade']}")
-
-        # Archive existing documentation if needed
-        if has_existing and not skip_archive:
-            if self.archive_manager.auto_archive_before_update(
-                self.project_path / "CLAUDE.md", update_reason="Before mpm-init update"
-            ):
-                checks_passed.append("Archived existing CLAUDE.md")
-
-        # Check for issues in validation report
-        if validation.get("issues"):
-            for issue in validation["issues"]:
-                warnings.append(issue["description"])
-
-        if warnings:
-            console.print("\n[yellow]⚠️  Project issues detected:[/yellow]")
-            for warning in warnings[:5]:
-                console.print(f"  • {warning}")
-            console.print()
-
-        if checks_passed:
-            console.print("[green]✅ Pre-initialization checks:[/green]")
-            for check in checks_passed:
-                console.print(f"  • {check}")
-            console.print()
-
-        return {
-            "status": OperationResult.SUCCESS,
-            "checks_passed": checks_passed,
-            "warnings": warnings,
-        }
-
-    def _show_update_plan(self, ast_analysis: bool, preserve_custom: bool) -> None:
-        """Show update mode plan."""
-        console.print(
-            Panel(
-                "[bold cyan]🔄 Claude MPM Documentation Update[/bold cyan]\n\n"
-                "This will update your existing CLAUDE.md with:\n"
-                "• Smart merging of new and existing content\n"
-                + ("• Preservation of custom sections\n" if preserve_custom else "")
-                + "• Priority-based reorganization (🔴🟡🟢⚪)\n"
-                "• Updated single-path workflows\n"
-                "• Refreshed tool configurations\n"
-                + (
-                    "• AST analysis for enhanced documentation\n"
-                    if ast_analysis
-                    else ""
-                )
-                + "• Automatic archival of previous version\n"
-                + "• Holistic review and optimization\n"
-                + "\n[dim]Previous version will be archived in docs/_archive/[/dim]",
-                title="Update Mode",
-                border_style="blue",
-            )
-        )
-
-    def _show_initialization_plan(self, ast_analysis: bool) -> None:
-        """Show standard initialization plan."""
-        console.print(
-            Panel(
-                "[bold cyan]🤖👥 Claude MPM Project Initialization[/bold cyan]\n\n"
-                "This will set up your project with:\n"
-                "• Clear CLAUDE.md documentation for AI agents\n"
-                "• Single-path workflows (ONE way to do ANYTHING)\n"
-                "• Optimized project structure\n"
-                "• Tool configurations (linting, formatting, testing)\n"
-                "• GitHub workflows and CI/CD setup\n"
-                "• Memory system initialization\n"
-                + (
-                    "• AST analysis for comprehensive code documentation\n"
-                    if ast_analysis
-                    else ""
-                )
-                + "• Holistic CLAUDE.md organization with ranked instructions\n"
-                + "• Priority-based content structure (🔴🟡🟢⚪)\n"
-                + "\n[dim]Powered by Agentic Coder Optimizer Agent[/dim]",
-                title="MPM-Init",
-                border_style="cyan",
-            )
-        )
-
-    def _build_update_prompt(
-        self,
-        project_type: Optional[str],
-        framework: Optional[str],
-        ast_analysis: bool,
-        preserve_custom: bool,
-    ) -> str:
-        """Build prompt for update mode."""
-        # Get existing content analysis
-        doc_analysis = self.doc_manager.analyze_existing_content()
-
-        prompt = f"""Please delegate this task to the Agentic Coder Optimizer agent:
-
-UPDATE existing CLAUDE.md documentation for this project.
-
-Project Path: {self.project_path}
-Update Mode: Smart merge with existing content
-"""
-        if project_type:
-            prompt += f"Project Type: {project_type}\n"
-        if framework:
-            prompt += f"Framework: {framework}\n"
-
-        prompt += f"""
-Existing Documentation Analysis:
-- Current CLAUDE.md: {doc_analysis.get('size', 0):,} characters, {doc_analysis.get('lines', 0)} lines
-- Has Priority Index: {'Yes' if doc_analysis.get('has_priority_index') else 'No'}
-- Custom Sections: {len(doc_analysis.get('custom_sections', []))} found
-"""
-        if preserve_custom and doc_analysis.get("custom_sections"):
-            prompt += f"- Preserve Custom Sections: {', '.join(doc_analysis['custom_sections'][:5])}\n"
-
-        prompt += """
-Please perform the following UPDATE tasks:
-
-1. **Review Existing Content**:
-   - Analyze current CLAUDE.md structure and content
-   - Identify outdated or missing information
-   - Preserve valuable custom sections and project-specific knowledge
-
-2. **Smart Content Merge**:
-   - Update project overview if needed
-   - Refresh architecture documentation
-   - Update development workflows to ensure single-path principle
-   - Merge new standard sections while preserving custom content
-   - Remove duplicate or contradictory information
-
-3. **Update Priority Organization**:
-   - Reorganize content with priority markers (🔴🟡🟢⚪)
-   - Ensure critical instructions are at the top
-   - Update priority index with all important items
-   - Validate instruction clarity and completeness
-
-4. **Refresh Technical Content**:
-   - Update build/test/deploy commands
-   - Verify tool configurations are current
-   - Update dependency information
-   - Refresh API documentation if applicable
-"""
-        if ast_analysis:
-            prompt += """
-5. **Update Code Documentation** (using Code Analyzer agent):
-   - Re-analyze code structure for changes
-   - Update API documentation
-   - Refresh architecture diagrams
-   - Update function/class documentation
-"""
-        prompt += """
-6. **Final Optimization**:
-   - Ensure single-path principle throughout
-   - Validate all links and references
-   - Add/update timestamp in meta section
-   - Verify AI agent readability
-
-IMPORTANT: This is an UPDATE operation. Intelligently merge new content with existing,
-preserving valuable project-specific information while refreshing standard sections.
-"""
-        return prompt
-
-    def _handle_update_post_processing(self) -> None:
-        """Handle post-processing after successful update."""
-        # Generate update report
-        if self.doc_manager.has_existing_documentation():
-            latest_archive = self.archive_manager.get_latest_archive("CLAUDE.md")
-            if latest_archive:
-                comparison = self.archive_manager.compare_with_archive(
-                    self.project_path / "CLAUDE.md", latest_archive.name
-                )
-
-                if not comparison.get("identical"):
-                    console.print("\n[bold cyan]📊 Update Summary[/bold cyan]")
-                    console.print(
-                        f"  Lines changed: {comparison.get('lines_added', 0):+d}"
-                    )
-                    console.print(
-                        f"  Size change: {comparison.get('size_change', 0):+,} characters"
-                    )
-                    console.print(f"  Previous version: {latest_archive.name}")
-
-    def _run_initialization(
-        self,
-        prompt: str,
-        verbose: bool,
-        update_mode: bool = False,
-    ) -> Dict:
-        """Run the initialization through subprocess calling claude-mpm."""
-        import tempfile
-
-        try:
-            # Write prompt to temporary file
-            with tempfile.NamedTemporaryFile(
-                mode="w", suffix=".txt", delete=False
-            ) as tmp_file:
-                tmp_file.write(prompt)
-                prompt_file = tmp_file.name
-
-            try:
-                # Build the command
-                cmd = self._build_claude_mpm_command(verbose)
-                # Add the input file flag
-                cmd.extend(["-i", prompt_file])
-
-                # Log the command if verbose
-                if verbose:
-                    console.print(f"[dim]Running: {' '.join(cmd)}[/dim]")
-                    console.print(f"[dim]Prompt file: {prompt_file}[/dim]")
-
-                # Execute the command
-                result = subprocess.run(
-                    cmd,
-                    capture_output=True,
-                    text=True,
-                    cwd=str(self.project_path),
-                    check=False,
-                )
-            finally:
-                # Clean up temporary file
-
-                with contextlib.suppress(Exception):
-                    Path(prompt_file).unlink()
-
-            # Display output if verbose
-            if verbose and result.stdout:
-                console.print(result.stdout)
-            if verbose and result.stderr:
-                console.print(f"[yellow]{result.stderr}[/yellow]")
-
-            # Check result - be more lenient with return codes
-            if result.returncode == 0 or (self.project_path / "CLAUDE.md").exists():
-                response = {
-                    "status": OperationResult.SUCCESS,
-                    "message": "Project initialized successfully",
-                    "files_created": [],
-                    "files_updated": [],
-                    "next_steps": [],
-                }
-
-                # Check if CLAUDE.md was created
-                claude_md = self.project_path / "CLAUDE.md"
-                if claude_md.exists():
-                    response["files_created"].append("CLAUDE.md")
-
-                # Check for other common files
-                for file_name in ["CODE.md", "DEVELOPER.md", "STRUCTURE.md", "OPS.md"]:
-                    file_path = self.project_path / file_name
-                    if file_path.exists():
-                        response["files_created"].append(file_name)
-
-                # Add next steps
-                response["next_steps"] = [
-                    "Review the generated CLAUDE.md documentation",
-                    "Verify the project structure meets your needs",
-                    "Run 'claude-mpm run' to start using the optimized setup",
-                ]
-
-                # Display results
-                self._display_results(response, verbose)
-
-                return response
-            # Extract meaningful error message
-            error_msg = (
-                result.stderr
-                if result.stderr
-                else result.stdout if result.stdout else "Unknown error occurred"
-            )
-
-            logger.error(f"claude-mpm run failed: {error_msg}")
-            return {
-                "status": OperationResult.ERROR,
-                "message": f"Initialization failed: {error_msg}",
-            }
-
-        except FileNotFoundError:
-            logger.error("claude-mpm command not found")
-            console.print(
-                "[red]Error: claude-mpm command not found. Ensure Claude MPM is properly installed.[/red]"
-            )
-            return {"status": OperationResult.ERROR, "message": "claude-mpm not found"}
-        except Exception as e:
-            logger.error(f"Initialization failed: {e}")
-            return {"status": OperationResult.ERROR, "message": str(e)}
-
-    def handle_context(
-        self,
-        session_id: Optional[str] = None,
-        list_sessions: bool = False,
-        days: int = 7,
-    ) -> Dict[str, Any]:
-        """
-        Provide intelligent context for resuming work based on git history.
-
-        Analyzes recent commits to identify:
-        - Active work streams (what was being worked on)
-        - Intent and motivation (why this work)
-        - Risks and blockers
-        - Recommended next actions
-
-        This delegates to Research agent for deep analysis.
-
-        Args:
-            session_id: Unused parameter (for compatibility)
-            list_sessions: Unused parameter (for compatibility)
-            days: Number of days of git history to analyze (default: 7)
-
-        Returns:
-            Dict containing context result
-        """
-        from claude_mpm.utils.git_analyzer import analyze_recent_activity
-
-        # 1. Analyze git history with adaptive window
-        console.print(f"\n🔍 Analyzing last {days} days of git history...\n")
-        git_analysis = analyze_recent_activity(
-            repo_path=str(self.project_path), days=days, max_commits=50, min_commits=25
-        )
-
-        # Show adaptive behavior to user
-        if git_analysis.get("adaptive_mode"):
-            console.print(
-                f"[cyan]ℹ️  Note: Analyzed {git_analysis.get('actual_time_span', 'extended period')} "
-                f"to get meaningful context[/cyan]"
-            )
-            if git_analysis.get("reason"):
-                console.print(f"[dim]    Reason: {git_analysis['reason']}[/dim]\n")
-            else:
-                console.print()
-
-        if git_analysis.get("error"):
-            console.print(
-                f"[yellow]⚠️  Could not analyze git history: {git_analysis['error']}[/yellow]"
-            )
-            console.print(
-                "[dim]Ensure this is a git repository with commit history.[/dim]\n"
-            )
-            return {
-                "status": OperationResult.ERROR,
-                "message": git_analysis["error"],
-            }
-
-        if not git_analysis.get("has_activity"):
-            console.print(
-                f"[yellow]⚠️  No git activity found in the last {days} days.[/yellow]"
-            )
-            console.print("[dim]Try increasing the --days parameter.[/dim]\n")
-            return {
-                "status": OperationResult.ERROR,
-                "message": f"No git activity in last {days} days",
-            }
-
-        # 2. Build Research delegation prompt
-        research_prompt = self._build_research_context_prompt(git_analysis, days)
-
-        # 3. Display prompt for PM to delegate
-        console.print("\n" + "=" * 80)
-        console.print("📋 DELEGATE TO RESEARCH AGENT:")
-        console.print("=" * 80 + "\n")
-        console.print(research_prompt)
-        console.print("\n" + "=" * 80 + "\n")
-
-        return {
-            "status": OperationResult.CONTEXT_READY,
-            "git_analysis": git_analysis,
-            "research_prompt": research_prompt,
-            "recommendation": "PM should delegate this prompt to Research agent",
-        }
-
-    def _build_research_context_prompt(
-        self, git_analysis: Dict[str, Any], days: int
-    ) -> str:
-        """Build structured Research agent delegation prompt from git analysis."""
-
-        # Extract key data
-        commits = git_analysis.get("commits", [])
-        branches = git_analysis.get("branches", [])
-        contributors = git_analysis.get("contributors", {})
-        file_changes = git_analysis.get("file_changes", {})
-
-        # Build prompt following Prompt Engineer's template
-        prompt = f"""# Project Context Analysis Mission
-
-You are Research agent analyzing git history to provide PM with intelligent project context for resuming work.
-
-## Analysis Scope
-- **Time Range**: Last {days} days"""
-
-        # Add adaptive mode note if applicable
-        if git_analysis.get("adaptive_mode"):
-            actual_days = git_analysis.get("actual_time_span", "extended period")
-            prompt += f""" (adaptive: {actual_days} days analyzed)
-- **Note**: {git_analysis.get('reason', 'Analysis window adjusted to ensure meaningful context')}"""
-
-        prompt += f"""
-- **Commits Analyzed**: {len(commits)} commits
-- **Branches**: {', '.join(branches[:5]) if branches else 'main'}
-- **Contributors**: {', '.join(contributors.keys()) if contributors else 'Unknown'}
-
-## Your Mission
-
-Analyze git history to answer these questions for PM:
-
-1. **What was being worked on?** (Active work streams)
-2. **Why was this work happening?** (Intent and motivation)
-3. **What's the natural next step?** (Continuation recommendations)
-4. **What needs attention?** (Risks, stalls, conflicts)
-
-## Git Data Provided
-
-### Recent Commits ({min(len(commits), 10)} most recent):
-"""
-
-        # Add recent commits
-        for commit in commits[:10]:
-            author = commit.get("author", "Unknown")
-            timestamp = commit.get("timestamp", "Unknown date")
-            message = commit.get("message", "No message")
-            files = commit.get("files", [])
-
-            prompt += f"\n- **{timestamp}** by {author}"
-            prompt += f"\n  {message}"
-            prompt += f"\n  Files changed: {len(files)}\n"
-
-        # Add file change summary
-        if file_changes:
-            # Sort by modifications count
-            sorted_files = sorted(
-                file_changes.items(),
-                key=lambda x: x[1].get("modifications", 0),
-                reverse=True,
-            )
-            prompt += "\n### Most Changed Files:\n"
-            for file_path, file_data in sorted_files[:10]:
-                modifications = file_data.get("modifications", 0)
-                file_contributors = file_data.get("contributors", [])
-                prompt += f"- {file_path}: {modifications} changes ({len(file_contributors)} contributor{'s' if len(file_contributors) != 1 else ''})\n"
-
-        # Add contributor summary
-        if contributors:
-            prompt += "\n### Contributors:\n"
-            sorted_contributors = sorted(
-                contributors.items(),
-                key=lambda x: x[1].get("commits", 0),
-                reverse=True,
-            )
-            for name, info in sorted_contributors[:5]:
-                commit_count = info.get("commits", 0)
-                prompt += f"- {name}: {commit_count} commit{'s' if commit_count != 1 else ''}\n"
-
-        # Add analysis instructions
-        prompt += """
-
-## Analysis Instructions
-
-### Phase 1: Work Stream Identification
-Group related commits into thematic work streams. For each stream:
-- **Name**: Infer from commit messages (e.g., "Authentication refactor")
-- **Status**: ongoing/completed/stalled
-- **Commits**: Count of commits in this stream
-- **Intent**: WHY this work (from commit bodies/messages)
-- **Key Files**: Most changed files in this stream
-
-### Phase 2: Risk Detection
-Identify:
-- **Stalled Work**: Work streams with no activity >3 days
-- **Anti-Patterns**: WIP commits, temp commits, debug commits
-- **Documentation Lag**: Code changes without doc updates
-- **Conflicts**: Merge conflicts or divergent branches
-
-### Phase 3: Recommendations
-Based on analysis:
-1. **Primary Focus**: Most active/recent work to continue
-2. **Quick Wins**: Small tasks that could be finished
-3. **Blockers**: Issues preventing progress
-4. **Next Steps**: Logical continuation points
-
-## Output Format
-
-Provide a clear markdown summary with:
-
-1. **Active Work Streams** (What was being worked on)
-2. **Intent Summary** (Why this work matters)
-3. **Risks Detected** (What needs attention)
-4. **Recommended Next Actions** (What to work on)
-
-Keep it concise (<1000 words) but actionable.
-
-## Success Criteria
-- Work streams accurately reflect development themes
-- Intent captures the "why" not just "what"
-- Recommendations are specific and actionable
-- Risks are prioritized by impact
-"""
-
-        return prompt
-
-    def _display_results(self, result: Dict, verbose: bool):
-        """Display initialization results."""
-        if result["status"] == OperationResult.SUCCESS:
-            console.print("\n[green]✅ Project Initialization Complete![/green]\n")
-
-            # Display files created
-            if result.get("files_created"):
-                self.display.display_files_list(
-                    "Files Created:", result["files_created"]
-                )
-
-            # Display files updated
-            if result.get("files_updated"):
-                self.display.display_files_list(
-                    "Files Updated:", result["files_updated"]
-                )
-
-            # Display next steps
-            if result.get("next_steps"):
-                self.display.display_next_steps(result["next_steps"])
-
-            # Display success panel
-            success_content = (
-                "[green]Your project is now optimized for Claude Code and Claude MPM![/green]\n\n"
-                "Key files:\n"
-                "• [cyan]CLAUDE.md[/cyan] - Main documentation for AI agents\n"
-                "  - Organized with priority rankings (🔴🟡🟢⚪)\n"
-                "  - Instructions ranked by importance for AI understanding\n"
-                "  - Holistic documentation review completed\n"
-                "• [cyan].claude-mpm/[/cyan] - Configuration and memories\n"
-                "• [cyan]CODE_STRUCTURE.md[/cyan] - AST-derived architecture documentation (if enabled)\n\n"
-                "[dim]Run 'claude-mpm run' to start using the optimized setup[/dim]"
-            )
-            self.display.display_success_panel("Success", success_content)
-
-
-@click.group(name="mpm-init", invoke_without_command=True)
-@click.option(
-    "--project-type",
-    type=click.Choice(
-        ["web", "api", "cli", "library", "mobile", "desktop", "fullstack"]
-    ),
-    help="Type of project to initialize",
-)
-@click.option(
-    "--framework",
-    type=str,
-    help="Specific framework (e.g., react, django, fastapi, express)",
-)
-@click.option(
-    "--force",
-    is_flag=True,
-    help="Force reinitialization even if project is already configured",
-)
-@click.option(
-    "--update",
-    is_flag=True,
-    help="Update existing CLAUDE.md instead of recreating",
-)
-@click.option(
-    "--review",
-    is_flag=True,
-    help="Review project state without making changes",
-)
-@click.option(
-    "--organize",
-    is_flag=True,
-    help="Automatically organize misplaced files into proper directories",
-)
-@click.option(
-    "--auto-safe/--no-auto-safe",
-    default=True,
-    help="Only move files with high confidence (default: safe mode on)",
-)
-@click.option(
-    "--preserve-custom/--no-preserve-custom",
-    default=True,
-    help="Preserve custom sections when updating (default: preserve)",
-)
-@click.option(
-    "--skip-archive",
-    is_flag=True,
-    help="Skip archiving existing files before updating",
-)
-@click.option(
-    "--verbose", is_flag=True, help="Show detailed output during initialization"
-)
-@click.option(
-    "--ast-analysis/--no-ast-analysis",
-    default=True,
-    help="Enable/disable AST analysis for enhanced documentation (default: enabled)",
-)
-@click.option(
-    "--quick-update",
-    is_flag=True,
-    help="Perform lightweight update based on recent git activity (default: 30 days)",
-)
-@click.option(
-    "--catchup",
-    is_flag=True,
-    help="Show recent commit history from all branches for PM context",
-)
-@click.option(
-    "--non-interactive",
-    is_flag=True,
-    help="Non-interactive mode - display report only without prompting (use with --quick-update)",
-)
-@click.option(
-    "--days",
-    type=int,
-    default=30,
-    help="Number of days for git history analysis in quick update mode (default: 30)",
-)
-@click.option(
-    "--export",
-    type=str,
-    default=None,
-    help="Export activity report to file (default: docs/reports/activity-report-{timestamp}.md)",
-)
-@click.argument(
-    "project_path",
-    type=click.Path(exists=True, file_okay=False, dir_okay=True),
-    required=False,
-    default=".",
-)
-@click.pass_context
-def mpm_init(
-    ctx,
-    project_type,
-    framework,
-    force,
-    update,
-    review,
-    organize,
-    auto_safe,
-    preserve_custom,
-    skip_archive,
-    verbose,
-    ast_analysis,
-    quick_update,
-    catchup,
-    non_interactive,
-    days,
-    export,
-    project_path,
-):
-    """
-    Initialize or update a project for optimal use with Claude Code and Claude MPM.
-
-    This command uses the Agentic Coder Optimizer agent to:
-    - Create or update comprehensive CLAUDE.md documentation
-    - Establish single-path workflows (ONE way to do ANYTHING)
-    - Configure development tools and standards
-    - Set up memory systems for project knowledge
-    - Optimize for AI agent understanding
-    - Perform AST analysis for enhanced developer documentation
-
-    Context Management:
-    - resume: Analyze git history to provide context for resuming work
-    - --catchup: Show recent commit history for PM context
-
-    Update Mode:
-    When CLAUDE.md exists, the command offers to update rather than recreate,
-    preserving custom content while refreshing standard sections.
-
-    Examples:
-        claude-mpm mpm-init                           # Initialize/update current directory
-        claude-mpm mpm-init --catchup                 # Show recent git history for context
-        claude-mpm mpm-init --review                  # Review project state without changes
-        claude-mpm mpm-init --update                  # Force update mode
-        claude-mpm mpm-init --organize                # Organize misplaced files
-        claude-mpm mpm-init --project-type web        # Initialize as web project
-        claude-mpm mpm-init /path/to/project --force  # Force reinitialize project
-    """
-    # If a subcommand is being invoked, don't run the main command
-    if ctx.invoked_subcommand is not None:
-        return
-
-    try:
-        # Create command instance
-        command = MPMInitCommand(Path(project_path))
-
-        # Run initialization (now synchronous)
-        result = command.initialize_project(
-            project_type=project_type,
-            framework=framework,
-            force=force,
-            verbose=verbose,
-            ast_analysis=ast_analysis,
-            update_mode=update,
-            review_only=review,
-            organize_files=organize,
-            preserve_custom=preserve_custom,
-            skip_archive=skip_archive,
-            quick_update=quick_update,
-            catchup=catchup,
-            non_interactive=non_interactive,
-            days=days,
-            export=export,
-        )
-
-        # Exit with appropriate code
-        if result["status"] == OperationResult.SUCCESS:
-            sys.exit(0)
-        else:
-            sys.exit(1)
-
-    except KeyboardInterrupt:
-        console.print("\n[yellow]Initialization cancelled by user[/yellow]")
-        sys.exit(130)
-    except Exception as e:
-        console.print(f"[red]Initialization failed: {e}[/red]")
-        sys.exit(1)
-
-
-@mpm_init.command(name="context")
-@click.option(
-    "--session-id",
-    "-i",
-    type=str,
-    help="Unused (for compatibility) - will be removed in future version",
-)
-@click.option(
-    "--days",
-    type=int,
-    default=7,
-    help="Number of days of git history to analyze (default: 7)",
-)
-@click.argument(
-    "project_path",
-    type=click.Path(exists=True, file_okay=False, dir_okay=True),
-    required=False,
-    default=".",
-)
-def context_command(session_id, days, project_path):
-    """
-    Provide intelligent context for resuming work based on git history.
-
-    Analyzes recent git history and generates a Research agent delegation
-    prompt for intelligent project context reconstruction.
-
-    Examples:
-        claude-mpm mpm-init context                  # Analyze last 7 days
-        claude-mpm mpm-init context --days 14        # Analyze last 14 days
-        claude-mpm mpm-init context --days 30        # Analyze last 30 days
-
-    Note: 'resume' is deprecated, use 'context' instead.
-    """
-    try:
-        command = MPMInitCommand(Path(project_path))
-
-        result = command.handle_context(session_id=session_id, days=days)
-
-        if (
-            result["status"] == OperationResult.SUCCESS
-            or result["status"] == OperationResult.CONTEXT_READY
-        ):
-            sys.exit(0)
-        else:
-            sys.exit(1)
-
-    except KeyboardInterrupt:
-        console.print("\n[yellow]Context analysis cancelled by user[/yellow]")
-        sys.exit(130)
-    except Exception as e:
-        console.print(f"[red]Context analysis failed: {e}[/red]")
-        sys.exit(1)
-
-
-# Add deprecated 'resume' alias for backward compatibility
-@mpm_init.command(name="resume", hidden=True)
-@click.option(
-    "--session-id",
-    "-i",
-    type=str,
-    help="Unused (for compatibility) - will be removed in future version",
-)
-@click.option(
-    "--days",
-    type=int,
-    default=7,
-    help="Number of days of git history to analyze (default: 7)",
-)
-@click.argument(
-    "project_path",
-    type=click.Path(exists=True, file_okay=False, dir_okay=True),
-    required=False,
-    default=".",
-)
-def resume_session(session_id, days, project_path):
-    """
-    [DEPRECATED] Use 'context' instead.
-
-    This command is deprecated and will be removed in a future version.
-    Please use 'claude-mpm mpm-init context' instead.
-    """
-    console.print(
-        "[yellow]⚠️  Warning: 'resume' is deprecated. Use 'context' instead.[/yellow]"
-    )
-    console.print("[dim]Run: claude-mpm mpm-init context[/dim]\n")
-
-    try:
-        command = MPMInitCommand(Path(project_path))
-        result = command.handle_context(session_id=session_id, days=days)
-
-        if (
-            result["status"] == OperationResult.SUCCESS
-            or result["status"] == OperationResult.CONTEXT_READY
-        ):
-            sys.exit(0)
-        else:
-            sys.exit(1)
-
-    except KeyboardInterrupt:
-        console.print("\n[yellow]Context analysis cancelled by user[/yellow]")
-        sys.exit(130)
-    except Exception as e:
-        console.print(f"[red]Context analysis failed: {e}[/red]")
-        sys.exit(1)
-
-
-# Export for CLI registration
-__all__ = ["mpm_init"]