claude-mpm 3.4.10__py3-none-any.whl → 5.4.85__py3-none-any.whl

claude_mpm/services/{memory_builder.py → memory/builder.py}

@@ -23,326 +23,356 @@ while preserving essential information.
 """
 
 import re
-import os
+from datetime import datetime, timezone
 from pathlib import Path
-from typing import Dict, List, Optional, Any, Tuple
-from datetime import datetime
+from typing import Any, Dict, List, Optional
 
-from claude_mpm.core import LoggerMixin
 from claude_mpm.core.config import Config
-from claude_mpm.utils.paths import PathResolver
-from claude_mpm.services.memory_router import MemoryRouter
-from claude_mpm.services.project_analyzer import ProjectAnalyzer
+from claude_mpm.core.mixins import LoggerMixin
+from claude_mpm.core.shared.config_loader import ConfigLoader
+from claude_mpm.core.unified_paths import get_path_manager
+from claude_mpm.services.memory.router import MemoryRouter
+from claude_mpm.services.project.analyzer import ProjectAnalyzer
 
 
 class MemoryBuilder(LoggerMixin):
     """Builds agent memories from project documentation.
-    
+
     WHY: Documentation contains patterns and guidelines that agents should know
     about. Manual memory creation is time-consuming and prone to inconsistency.
     This service automates the extraction and assignment process.
-    
+
     DESIGN DECISION: Uses pattern matching and content analysis to extract
     actionable insights rather than copying raw documentation. Focuses on
     creating learnings that will actually be useful to agents.
     """
-    
+
     # Documentation files to process
     DOC_FILES = {
-        'CLAUDE.md': {
-            'priority': 'high',
-            'sections': ['development guidelines', 'key components', 'common issues'],
-            'agents': ['pm', 'engineer']
+        "CLAUDE.md": {
+            "priority": "high",
+            "sections": ["development guidelines", "key components", "common issues"],
+            "agents": ["pm", "engineer"],
         },
-        'docs/STRUCTURE.md': {
-            'priority': 'high', 
-            'sections': ['file placement', 'design patterns', 'directory structure'],
-            'agents': ['engineer', 'documentation']
+        "docs/STRUCTURE.md": {
+            "priority": "high",
+            "sections": ["file placement", "design patterns", "directory structure"],
+            "agents": ["engineer", "documentation"],
         },
-        'docs/QA.md': {
-            'priority': 'high',
-            'sections': ['testing', 'quality assurance', 'validation'],
-            'agents': ['qa', 'engineer']
+        "docs/QA.md": {
+            "priority": "high",
+            "sections": ["testing", "quality assurance", "validation"],
+            "agents": ["qa", "engineer"],
         },
-        'docs/DEPLOY.md': {
-            'priority': 'medium',
-            'sections': ['deployment', 'versioning', 'release'],
-            'agents': ['engineer', 'pm']
+        "docs/DEPLOY.md": {
+            "priority": "medium",
+            "sections": ["deployment", "versioning", "release"],
+            "agents": ["engineer", "pm"],
+        },
+        "docs/VERSIONING.md": {
+            "priority": "medium",
+            "sections": ["version management", "semantic versioning"],
+            "agents": ["engineer", "pm"],
         },
-        'docs/VERSIONING.md': {
-            'priority': 'medium',
-            'sections': ['version management', 'semantic versioning'],
-            'agents': ['engineer', 'pm']
-        }
     }
-    
+
     # Patterns for extracting actionable content
     EXTRACTION_PATTERNS = {
-        'guidelines': [
-            r'(?:must|should|always|never|avoid|ensure|remember to)\s+(.+?)(?:\.|$)',
-            r'(?:important|note|warning|tip):\s*(.+?)(?:\.|$)',
-            r'(?:do not|don\'t)\s+(.+?)(?:\.|$)'
+        "guidelines": [
+            r"(?:must|should|always|never|avoid|ensure|remember to)\s+(.+?)(?:\.|$)",
+            r"(?:important|note|warning|tip):\s*(.+?)(?:\.|$)",
+            r"(?:do not|don\'t)\s+(.+?)(?:\.|$)",
         ],
-        'patterns': [
-            r'(?:pattern|approach|strategy|method):\s*(.+?)(?:\.|$)',
-            r'(?:use|implement|follow)\s+(.+?)\s+(?:pattern|approach|for)',
-            r'(?:follows|uses|implements)\s+(.+?)\s+(?:pattern|architecture)'
+        "patterns": [
+            r"(?:pattern|approach|strategy|method):\s*(.+?)(?:\.|$)",
+            r"(?:use|implement|follow)\s+(.+?)\s+(?:pattern|approach|for)",
+            r"(?:follows|uses|implements)\s+(.+?)\s+(?:pattern|architecture)",
         ],
-        'mistakes': [
-            r'(?:common\s+)?(?:mistake|error|issue|problem):\s*(.+?)(?:\.|$)',
-            r'(?:avoid|never|don\'t)\s+(.+?)(?:\.|$)',
-            r'(?:pitfall|gotcha|warning):\s*(.+?)(?:\.|$)'
+        "mistakes": [
+            r"(?:common\s+)?(?:mistake|error|issue|problem):\s*(.+?)(?:\.|$)",
+            r"(?:avoid|never|don\'t)\s+(.+?)(?:\.|$)",
+            r"(?:pitfall|gotcha|warning):\s*(.+?)(?:\.|$)",
+        ],
+        "architecture": [
+            r"(?:architecture|structure|design):\s*(.+?)(?:\.|$)",
+            r"(?:component|service|module)\s+(.+?)\s+(?:provides|handles|manages)",
+            r"(?:uses|implements|follows)\s+(.+?)\s+(?:architecture|pattern)",
         ],
-        'architecture': [
-            r'(?:architecture|structure|design):\s*(.+?)(?:\.|$)',
-            r'(?:component|service|module)\s+(.+?)\s+(?:provides|handles|manages)',
-            r'(?:uses|implements|follows)\s+(.+?)\s+(?:architecture|pattern)'
-        ]
     }
-    
-    def __init__(self, config: Optional[Config] = None, working_directory: Optional[Path] = None):
+
+    def __init__(
+        self, config: Optional[Config] = None, working_directory: Optional[Path] = None
+    ):
         """Initialize the memory builder.
-        
+
         Args:
             config: Optional Config object
             working_directory: Optional working directory for project-specific analysis
         """
         super().__init__()
-        self.config = config or Config()
-        self.project_root = PathResolver.get_project_root()
+        if config:
+            self.config = config
+        else:
+            config_loader = ConfigLoader()
+            self.config = config_loader.load_main_config()
+        self.project_root = get_path_manager().project_root
         # Use current working directory by default, not project root
-        self.working_directory = working_directory or Path(os.getcwd())
+        self.working_directory = working_directory or Path(Path.cwd())
         self.memories_dir = self.working_directory / ".claude-mpm" / "memories"
         self.router = MemoryRouter(config)
         self.project_analyzer = ProjectAnalyzer(config, self.working_directory)
-    
+
     def _get_dynamic_doc_files(self) -> Dict[str, Dict[str, Any]]:
         """Get documentation files to process based on project analysis.
-        
+
         WHY: Instead of hardcoded file list, dynamically discover important files
         based on actual project structure and characteristics.
-        
+
         Returns:
             Dict mapping file paths to processing configuration
         """
         dynamic_files = {}
-        
+
         # Start with static important files
         static_files = self.DOC_FILES.copy()
-        
+
         # Get project-specific important files
         try:
             important_files = self.project_analyzer.get_important_files_for_context()
             project_characteristics = self.project_analyzer.analyze_project()
-            
+
             # Add configuration files
             for config_file in project_characteristics.important_configs:
                 if config_file not in static_files:
                     file_ext = Path(config_file).suffix.lower()
-                    
-                    if file_ext in ['.json', '.toml', '.yaml', '.yml']:
+
+                    if file_ext in [".json", ".toml", ".yaml", ".yml"]:
                         dynamic_files[config_file] = {
-                            'priority': 'medium',
-                            'sections': ['configuration', 'setup', 'dependencies'],
-                            'agents': ['engineer', 'pm'],
-                            'file_type': 'config'
+                            "priority": "medium",
+                            "sections": ["configuration", "setup", "dependencies"],
+                            "agents": ["engineer", "pm"],
+                            "file_type": "config",
                         }
-            
+
             # Add project-specific documentation
             for doc_file in important_files:
                 if doc_file not in static_files and doc_file not in dynamic_files:
                     file_path = Path(doc_file)
-                    
+
                     # Determine processing config based on file name/path
-                    if 'api' in doc_file.lower() or 'endpoint' in doc_file.lower():
+                    if "api" in doc_file.lower() or "endpoint" in doc_file.lower():
                         dynamic_files[doc_file] = {
-                            'priority': 'high',
-                            'sections': ['api', 'endpoints', 'integration'],
-                            'agents': ['engineer', 'integration'],
-                            'file_type': 'api_doc'
+                            "priority": "high",
+                            "sections": ["api", "endpoints", "integration"],
+                            "agents": ["engineer", "integration"],
+                            "file_type": "api_doc",
                         }
-                    elif 'architecture' in doc_file.lower() or 'design' in doc_file.lower():
+                    elif (
+                        "architecture" in doc_file.lower()
+                        or "design" in doc_file.lower()
+                    ):
                         dynamic_files[doc_file] = {
-                            'priority': 'high',
-                            'sections': ['architecture', 'design', 'patterns'],
-                            'agents': ['engineer', 'architect'],
-                            'file_type': 'architecture'
+                            "priority": "high",
+                            "sections": ["architecture", "design", "patterns"],
+                            "agents": ["engineer", "architect"],
+                            "file_type": "architecture",
                         }
-                    elif 'test' in doc_file.lower():
+                    elif "test" in doc_file.lower():
                         dynamic_files[doc_file] = {
-                            'priority': 'medium',
-                            'sections': ['testing', 'quality'],
-                            'agents': ['qa', 'engineer'],
-                            'file_type': 'test_doc'
+                            "priority": "medium",
+                            "sections": ["testing", "quality"],
+                            "agents": ["qa", "engineer"],
+                            "file_type": "test_doc",
                         }
-                    elif file_path.suffix.lower() == '.md':
+                    elif file_path.suffix.lower() == ".md":
                         # Generic markdown file
                         dynamic_files[doc_file] = {
-                            'priority': 'low',
-                            'sections': ['documentation', 'guidelines'],
-                            'agents': ['pm', 'engineer'],
-                            'file_type': 'markdown'
+                            "priority": "low",
+                            "sections": ["documentation", "guidelines"],
+                            "agents": ["pm", "engineer"],
+                            "file_type": "markdown",
                         }
-            
+
             # Add key source files for pattern analysis (limited selection)
             if project_characteristics.entry_points:
-                for entry_point in project_characteristics.entry_points[:2]:  # Only first 2
+                for entry_point in project_characteristics.entry_points[
+                    :2
+                ]:  # Only first 2
                     if entry_point not in dynamic_files:
                         dynamic_files[entry_point] = {
-                            'priority': 'low',
-                            'sections': ['patterns', 'implementation'],
-                            'agents': ['engineer'],
-                            'file_type': 'source',
-                            'extract_patterns_only': True  # Only extract patterns, not full content
+                            "priority": "low",
+                            "sections": ["patterns", "implementation"],
+                            "agents": ["engineer"],
+                            "file_type": "source",
+                            "extract_patterns_only": True,  # Only extract patterns, not full content
                         }
-                        
+
         except Exception as e:
             self.logger.warning(f"Error getting dynamic doc files: {e}")
-        
+
         # Merge static and dynamic files
         all_files = {**static_files, **dynamic_files}
-        
-        self.logger.debug(f"Processing {len(all_files)} documentation files ({len(static_files)} static, {len(dynamic_files)} dynamic)")
+
+        self.logger.debug(
+            f"Processing {len(all_files)} documentation files ({len(static_files)} static, {len(dynamic_files)} dynamic)"
+        )
         return all_files
-    
+
     def build_from_documentation(self, force_rebuild: bool = False) -> Dict[str, Any]:
         """Build agent memories from project documentation.
-        
+
         WHY: Documentation contains project-specific knowledge that agents need.
         This method extracts and assigns relevant information to appropriate agents.
-        
+
         Args:
             force_rebuild: If True, rebuilds even if docs haven't changed
-            
+
         Returns:
             Dict containing build results and statistics
         """
         try:
             results = {
                 "success": True,
-                "timestamp": datetime.now().isoformat(),
+                "timestamp": datetime.now(timezone.utc).isoformat(),
                 "files_processed": 0,
                 "memories_created": 0,
                 "memories_updated": 0,
                 "agents_affected": set(),
                 "files": {},
-                "errors": []
+                "errors": [],
             }
-            
+
             # Get dynamic list of files to process
             doc_files = self._get_dynamic_doc_files()
-            
+
             # Process each documentation file
             for doc_path, doc_config in doc_files.items():
                 file_path = self.project_root / doc_path
-                
+
                 if not file_path.exists():
                     self.logger.debug(f"Documentation file not found: {doc_path}")
                     continue
-                
+
                 # Check if rebuild is needed
                 if not force_rebuild and not self._needs_rebuild(file_path):
                     self.logger.debug(f"Skipping {doc_path} - no changes detected")
                     continue
-                
+
                 file_result = self._process_documentation_file(file_path, doc_config)
                 results["files"][doc_path] = file_result
-                
+
                 # Aggregate results
                 if file_result.get("success"):
                     results["files_processed"] += 1
-                    results["memories_created"] += file_result.get("memories_created", 0)
-                    results["memories_updated"] += file_result.get("memories_updated", 0)
-                    results["agents_affected"].update(file_result.get("agents_affected", []))
+                    results["memories_created"] += file_result.get(
+                        "memories_created", 0
+                    )
+                    results["memories_updated"] += file_result.get(
+                        "memories_updated", 0
+                    )
+                    results["agents_affected"].update(
+                        file_result.get("agents_affected", [])
+                    )
                 else:
-                    results["errors"].append(f"{doc_path}: {file_result.get('error', 'Unknown error')}")
-            
+                    results["errors"].append(
+                        f"{doc_path}: {file_result.get('error', 'Unknown error')}"
+                    )
+
             # Convert set to list for JSON serialization
             results["agents_affected"] = list(results["agents_affected"])
             results["total_agents_affected"] = len(results["agents_affected"])
-            
-            self.logger.info(f"Built memories from documentation: {results['files_processed']} files, {results['memories_created']} memories created")
+
+            self.logger.info(
+                f"Built memories from documentation: {results['files_processed']} files, {results['memories_created']} memories created"
+            )
             return results
-            
+
         except Exception as e:
             self.logger.error(f"Error building memories from documentation: {e}")
             return {
                 "success": False,
                 "error": str(e),
-                "timestamp": datetime.now().isoformat()
+                "timestamp": datetime.now(timezone.utc).isoformat(),
             }
-    
+
     def extract_from_text(self, text: str, source: str) -> List[Dict[str, Any]]:
         """Extract memory-worthy content from text.
-        
+
         WHY: Provides reusable text extraction logic that can be used for
         custom documentation or other text sources beyond standard files.
-        
+
         Args:
             text: Text content to analyze
             source: Source identifier for context
-            
+
         Returns:
             List of extracted memory items with metadata
         """
         try:
             extracted_items = []
-            
+
             # Process each extraction pattern type
             for pattern_type, patterns in self.EXTRACTION_PATTERNS.items():
                 for pattern in patterns:
                     matches = re.finditer(pattern, text, re.IGNORECASE | re.MULTILINE)
-                    
+
                     for match in matches:
                         content = match.group(1).strip()
-                        
+
                         # Clean and validate content
                         content = self._clean_extracted_content(content)
                         if not self._is_valid_memory_content(content):
                             continue
-                        
+
                         # Route to appropriate agent
                         routing_result = self.router.analyze_and_route(content)
-                        
+
                         extracted_item = {
                             "content": content,
                             "type": pattern_type,
                             "source": source,
                             "target_agent": routing_result.get("target_agent", "pm"),
-                            "section": routing_result.get("section", "Recent Learnings"),
+                            "section": routing_result.get(
+                                "section", "Recent Learnings"
+                            ),
                             "confidence": routing_result.get("confidence", 0.5),
-                            "pattern_matched": pattern
+                            "pattern_matched": pattern,
                         }
-                        
+
                         extracted_items.append(extracted_item)
-            
+
             # Remove near-duplicates
             unique_items = self._deduplicate_extracted_items(extracted_items)
-            
-            self.logger.debug(f"Extracted {len(unique_items)} unique items from {source}")
+
+            self.logger.debug(
+                f"Extracted {len(unique_items)} unique items from {source}"
+            )
             return unique_items
-            
+
         except Exception as e:
             self.logger.error(f"Error extracting content from text: {e}")
             return []
-    
-    def build_agent_memory_from_items(self, agent_id: str, items: List[Dict[str, Any]]) -> Dict[str, Any]:
+
+    def build_agent_memory_from_items(
+        self, agent_id: str, items: List[Dict[str, Any]]
+    ) -> Dict[str, Any]:
         """Build or update agent memory from extracted items.
-        
+
         WHY: Extracted items need to be properly integrated into agent memory
         files while respecting existing content and size limits.
-        
+
         Args:
             agent_id: Target agent identifier
             items: List of extracted memory items
-            
+
         Returns:
             Dict containing update results
         """
         try:
-            from claude_mpm.services.agent_memory_manager import get_memory_manager
+            from claude_mpm.services.agents.memory import get_memory_manager
+
             memory_manager = get_memory_manager(self.config)
-            
+
             result = {
                 "success": True,
                 "agent_id": agent_id,
@@ -350,299 +380,340 @@ class MemoryBuilder(LoggerMixin):
                 "items_added": 0,
                 "items_skipped": 0,
                 "sections_updated": set(),
-                "errors": []
+                "errors": [],
             }
-            
+
             # Filter items for this agent
-            agent_items = [item for item in items if item.get("target_agent") == agent_id]
-            
+            agent_items = [
+                item for item in items if item.get("target_agent") == agent_id
+            ]
+
             for item in agent_items:
                 result["items_processed"] += 1
-                
+
                 try:
                     # Add to memory
                     section = item.get("section", "Recent Learnings")
                     content = item.get("content", "")
-                    
-                    success = memory_manager.update_agent_memory(agent_id, section, content)
-                    
+
+                    success = memory_manager.update_agent_memory(
+                        agent_id, section, content
+                    )
+
                     if success:
                         result["items_added"] += 1
                         result["sections_updated"].add(section)
                     else:
                         result["items_skipped"] += 1
                         result["errors"].append(f"Failed to add: {content[:50]}...")
-                        
+
                 except Exception as e:
                     result["items_skipped"] += 1
-                    result["errors"].append(f"Error processing item: {str(e)}")
-            
+                    result["errors"].append(f"Error processing item: {e!s}")
+
             # Convert set to list
             result["sections_updated"] = list(result["sections_updated"])
-            
+
             return result
-            
+
         except Exception as e:
             self.logger.error(f"Error building memory for {agent_id}: {e}")
-            return {
-                "success": False,
-                "agent_id": agent_id,
-                "error": str(e)
-            }
-    
-    def _extract_from_config_file(self, content: str, file_path: Path, doc_config: Dict[str, Any]) -> List[Dict[str, Any]]:
+            return {"success": False, "agent_id": agent_id, "error": str(e)}
+
+    def _extract_from_config_file(
+        self, content: str, file_path: Path, doc_config: Dict[str, Any]
+    ) -> List[Dict[str, Any]]:
         """Extract memory-worthy information from configuration files.
-        
+
         WHY: Configuration files contain important setup patterns, dependencies,
         and architectural decisions that agents should understand.
-        
+
         Args:
             content: File content
             file_path: Path to the file
             doc_config: Processing configuration
-            
+
         Returns:
             List of extracted memory items
         """
         extracted_items = []
         source = str(file_path.relative_to(self.project_root))
-        
+
         try:
             file_ext = file_path.suffix.lower()
-            
-            if file_ext == '.json':
+
+            if file_ext == ".json":
                 # Parse JSON configuration
                 import json
+
                 config_data = json.loads(content)
                 items = self._extract_from_json_config(config_data, source)
                 extracted_items.extend(items)
-                
-            elif file_ext in ['.toml']:
+
+            elif file_ext in [".toml"]:
                 # Parse TOML configuration
                 try:
                     try:
                         import tomllib
                     except ImportError:
                         import tomli as tomllib
-                    with open(file_path, 'rb') as f:
+                    with file_path.open("rb") as f:
                         config_data = tomllib.load(f)
                     items = self._extract_from_toml_config(config_data, source)
                     extracted_items.extend(items)
                 except ImportError:
                     self.logger.warning(f"TOML parsing not available for {source}")
-                    
-            elif file_ext in ['.yaml', '.yml']:
+
+            elif file_ext in [".yaml", ".yml"]:
                 # For YAML, fall back to text-based extraction for now
                 items = self.extract_from_text(content, source)
                 extracted_items.extend(items)
-            
+
             # Also extract text patterns for comments and documentation
             text_items = self.extract_from_text(content, source)
             extracted_items.extend(text_items)
-            
+
         except Exception as e:
             self.logger.warning(f"Error parsing config file {source}: {e}")
             # Fall back to text extraction
             extracted_items = self.extract_from_text(content, source)
-        
+
         return extracted_items
-    
-    def _extract_from_json_config(self, config_data: dict, source: str) -> List[Dict[str, Any]]:
+
+    def _extract_from_json_config(
+        self, config_data: dict, source: str
+    ) -> List[Dict[str, Any]]:
         """Extract patterns from JSON configuration."""
         items = []
-        
+
         # Extract dependencies information
-        if 'dependencies' in config_data:
-            deps = config_data['dependencies']
+        if "dependencies" in config_data:
+            deps = config_data["dependencies"]
             if isinstance(deps, dict) and deps:
                 dep_names = list(deps.keys())[:5]  # Limit to prevent overwhelming
                 deps_str = ", ".join(dep_names)
-                items.append({
-                    "content": f"Key dependencies: {deps_str}",
-                    "type": "dependency_info",
-                    "source": source,
-                    "target_agent": "engineer",
-                    "section": "Current Technical Context",
-                    "confidence": 0.8
-                })
-        
-        # Extract scripts (for package.json)
-        if 'scripts' in config_data:
-            scripts = config_data['scripts']
-            if isinstance(scripts, dict):
-                for script_name, script_cmd in list(scripts.items())[:3]:  # Limit to first 3
-                    items.append({
-                        "content": f"Build script '{script_name}': {script_cmd[:50]}{'...' if len(script_cmd) > 50 else ''}",
-                        "type": "build_pattern",
+                items.append(
+                    {
+                        "content": f"Key dependencies: {deps_str}",
+                        "type": "dependency_info",
                         "source": source,
                         "target_agent": "engineer",
-                        "section": "Implementation Guidelines",
-                        "confidence": 0.7
-                    })
-        
+                        "section": "Current Technical Context",
+                        "confidence": 0.8,
+                    }
+                )
+
+        # Extract scripts (for package.json)
+        if "scripts" in config_data:
+            scripts = config_data["scripts"]
+            if isinstance(scripts, dict):
+                for script_name, script_cmd in list(scripts.items())[
+                    :3
+                ]:  # Limit to first 3
+                    items.append(
+                        {
+                            "content": f"Build script '{script_name}': {script_cmd[:50]}{'...' if len(script_cmd) > 50 else ''}",
+                            "type": "build_pattern",
+                            "source": source,
+                            "target_agent": "engineer",
+                            "section": "Implementation Guidelines",
+                            "confidence": 0.7,
+                        }
+                    )
+
         return items
-    
-    def _extract_from_toml_config(self, config_data: dict, source: str) -> List[Dict[str, Any]]:
+
+    def _extract_from_toml_config(
+        self, config_data: dict, source: str
+    ) -> List[Dict[str, Any]]:
         """Extract patterns from TOML configuration."""
         items = []
-        
+
         # Extract project metadata (for pyproject.toml)
-        if 'project' in config_data:
-            project_info = config_data['project']
-            if 'dependencies' in project_info:
-                deps = project_info['dependencies']
+        if "project" in config_data:
+            project_info = config_data["project"]
+            if "dependencies" in project_info:
+                deps = project_info["dependencies"]
                 if deps:
-                    items.append({
-                        "content": f"Python dependencies: {', '.join(deps[:5])}",
+                    items.append(
+                        {
+                            "content": f"Python dependencies: {', '.join(deps[:5])}",
+                            "type": "dependency_info",
+                            "source": source,
+                            "target_agent": "engineer",
+                            "section": "Current Technical Context",
+                            "confidence": 0.8,
+                        }
+                    )
+
+        # Extract Rust dependencies (for Cargo.toml)
+        if "dependencies" in config_data:
+            deps = config_data["dependencies"]
+            if isinstance(deps, dict) and deps:
+                dep_names = list(deps.keys())[:5]
+                items.append(
+                    {
+                        "content": f"Rust dependencies: {', '.join(dep_names)}",
                         "type": "dependency_info",
                         "source": source,
                         "target_agent": "engineer",
                         "section": "Current Technical Context",
-                        "confidence": 0.8
-                    })
-        
-        # Extract Rust dependencies (for Cargo.toml)
-        if 'dependencies' in config_data:
-            deps = config_data['dependencies']
-            if isinstance(deps, dict) and deps:
-                dep_names = list(deps.keys())[:5]
-                items.append({
-                    "content": f"Rust dependencies: {', '.join(dep_names)}",
-                    "type": "dependency_info",
-                    "source": source,
-                    "target_agent": "engineer",
-                    "section": "Current Technical Context",
-                    "confidence": 0.8
-                })
-        
+                        "confidence": 0.8,
+                    }
+                )
+
         return items
-    
-    def _extract_from_source_file(self, content: str, file_path: Path, doc_config: Dict[str, Any]) -> List[Dict[str, Any]]:
+
+    def _extract_from_source_file(
+        self, content: str, file_path: Path, doc_config: Dict[str, Any]
+    ) -> List[Dict[str, Any]]:
         """Extract patterns from source code files.
-        
+
         WHY: Source files contain implementation patterns and architectural
         decisions that agents should be aware of, but we only extract high-level
         patterns rather than detailed code analysis.
-        
+
         Args:
             content: File content
             file_path: Path to the file
             doc_config: Processing configuration
-            
+
         Returns:
             List of extracted memory items
         """
         extracted_items = []
         source = str(file_path.relative_to(self.project_root))
-        
+
         # Only extract patterns if specified
-        if not doc_config.get('extract_patterns_only', False):
+        if not doc_config.get("extract_patterns_only", False):
             return []
-        
+
         file_ext = file_path.suffix.lower()
-        
+
         # Language-specific pattern extraction
-        if file_ext == '.py':
+        if file_ext == ".py":
             items = self._extract_python_patterns(content, source)
             extracted_items.extend(items)
-        elif file_ext in ['.js', '.ts']:
+        elif file_ext in [".js", ".ts"]:
             items = self._extract_javascript_patterns(content, source)
             extracted_items.extend(items)
-        
+
         return extracted_items[:3]  # Limit to prevent overwhelming
-    
-    def _extract_python_patterns(self, content: str, source: str) -> List[Dict[str, Any]]:
+
+    def _extract_python_patterns(
+        self, content: str, source: str
+    ) -> List[Dict[str, Any]]:
         """Extract high-level patterns from Python source."""
         items = []
-        
+
         # Check for common patterns
         if 'if __name__ == "__main__"' in content:
-            items.append({
-                "content": "Uses if __name__ == '__main__' pattern for script execution",
-                "type": "pattern",
-                "source": source,
-                "target_agent": "engineer",
-                "section": "Coding Patterns Learned",
-                "confidence": 0.8
-            })
-        
-        if 'from pathlib import Path' in content:
-            items.append({
-                "content": "Uses pathlib.Path for file operations (recommended pattern)",
-                "type": "pattern",
-                "source": source,
-                "target_agent": "engineer",
-                "section": "Coding Patterns Learned",
-                "confidence": 0.7
-            })
-        
+            items.append(
+                {
+                    "content": "Uses if __name__ == '__main__' pattern for script execution",
+                    "type": "pattern",
+                    "source": source,
+                    "target_agent": "engineer",
+                    "section": "Coding Patterns Learned",
+                    "confidence": 0.8,
+                }
+            )
+
+        if "from pathlib import Path" in content:
+            items.append(
+                {
+                    "content": "Uses pathlib.Path for file operations (recommended pattern)",
+                    "type": "pattern",
+                    "source": source,
+                    "target_agent": "engineer",
+                    "section": "Coding Patterns Learned",
+                    "confidence": 0.7,
+                }
+            )
+
         # Check for class definitions
-        class_matches = re.findall(r'class\s+(\w+)', content)
+        class_matches = re.findall(r"class\s+(\w+)", content)
         if class_matches:
-            items.append({
-                "content": f"Defines classes: {', '.join(class_matches[:3])}",
-                "type": "architecture",
-                "source": source,
-                "target_agent": "engineer",
-                "section": "Project Architecture",
-                "confidence": 0.6
-            })
-        
+            items.append(
+                {
+                    "content": f"Defines classes: {', '.join(class_matches[:3])}",
+                    "type": "architecture",
+                    "source": source,
+                    "target_agent": "engineer",
+                    "section": "Project Architecture",
+                    "confidence": 0.6,
+                }
+            )
+
         return items
-    
-    def _extract_javascript_patterns(self, content: str, source: str) -> List[Dict[str, Any]]:
+
+    def _extract_javascript_patterns(
+        self, content: str, source: str
+    ) -> List[Dict[str, Any]]:
         """Extract high-level patterns from JavaScript/TypeScript source."""
         items = []
-        
+
         # Check for async patterns
-        if 'async function' in content or 'async ' in content:
-            items.append({
-                "content": "Uses async/await patterns for asynchronous operations",
-                "type": "pattern",
-                "source": source,
-                "target_agent": "engineer",
-                "section": "Coding Patterns Learned",
-                "confidence": 0.8
-            })
-        
+        if "async function" in content or "async " in content:
+            items.append(
+                {
+                    "content": "Uses async/await patterns for asynchronous operations",
+                    "type": "pattern",
+                    "source": source,
+                    "target_agent": "engineer",
+                    "section": "Coding Patterns Learned",
+                    "confidence": 0.8,
+                }
+            )
+
         # Check for module patterns
-        if 'export ' in content:
-            items.append({
-                "content": "Uses ES6 module export patterns",
-                "type": "pattern",
-                "source": source,
-                "target_agent": "engineer",
-                "section": "Coding Patterns Learned",
-                "confidence": 0.7
-            })
-        
+        if "export " in content:
+            items.append(
+                {
+                    "content": "Uses ES6 module export patterns",
+                    "type": "pattern",
+                    "source": source,
+                    "target_agent": "engineer",
+                    "section": "Coding Patterns Learned",
+                    "confidence": 0.7,
+                }
+            )
+
         return items
-    
-    def _process_documentation_file(self, file_path: Path, doc_config: Dict[str, Any]) -> Dict[str, Any]:
+
+    def _process_documentation_file(
+        self, file_path: Path, doc_config: Dict[str, Any]
+    ) -> Dict[str, Any]:
         """Process a single documentation file with enhanced file type support.
-        
+
         Args:
             file_path: Path to documentation file
             doc_config: Configuration for this file type
-            
+
         Returns:
             Processing results
         """
         try:
             # Read file content
-            content = file_path.read_text(encoding='utf-8', errors='ignore')
-            
+            content = file_path.read_text(encoding="utf-8", errors="ignore")
+
             # Handle different file types
-            file_type = doc_config.get('file_type', 'markdown')
-            
-            if file_type == 'config':
-                extracted_items = self._extract_from_config_file(content, file_path, doc_config)
-            elif file_type == 'source':
-                extracted_items = self._extract_from_source_file(content, file_path, doc_config)
+            file_type = doc_config.get("file_type", "markdown")
+
+            if file_type == "config":
+                extracted_items = self._extract_from_config_file(
+                    content, file_path, doc_config
+                )
+            elif file_type == "source":
+                extracted_items = self._extract_from_source_file(
+                    content, file_path, doc_config
+                )
             else:
                 # Default markdown/text processing
-                extracted_items = self.extract_from_text(content, str(file_path.relative_to(self.project_root)))
-            
+                extracted_items = self.extract_from_text(
+                    content, str(file_path.relative_to(self.project_root))
+                )
+
             result = {
                 "success": True,
                 "file_path": str(file_path),
@@ -651,9 +722,9 @@ class MemoryBuilder(LoggerMixin):
                 "memories_created": 0,
                 "memories_updated": 0,
                 "agents_affected": [],
-                "agent_results": {}
+                "agent_results": {},
             }
-            
+
             # Group items by target agent
             agent_items = {}
             for item in extracted_items:
@@ -661,165 +732,186 @@ class MemoryBuilder(LoggerMixin):
                 if agent not in agent_items:
                     agent_items[agent] = []
                 agent_items[agent].append(item)
-            
+
             # Update each agent's memory
             for agent_id, items in agent_items.items():
                 agent_result = self.build_agent_memory_from_items(agent_id, items)
                 result["agent_results"][agent_id] = agent_result
-                
+
                 if agent_result.get("success"):
                     result["agents_affected"].append(agent_id)
                     result["memories_created"] += agent_result.get("items_added", 0)
-            
+
             # Update last processed timestamp
             self._update_last_processed(file_path)
-            
+
             return result
-            
+
         except Exception as e:
             self.logger.error(f"Error processing documentation file {file_path}: {e}")
-            return {
-                "success": False,
-                "file_path": str(file_path),
-                "error": str(e)
-            }
-    
+            return {"success": False, "file_path": str(file_path), "error": str(e)}
+
     def _needs_rebuild(self, file_path: Path) -> bool:
         """Check if documentation file needs to be processed.
-        
+
         Args:
             file_path: Path to documentation file
-            
+
         Returns:
             True if file needs processing
         """
         # Check if file was modified since last processing
         try:
             last_processed_file = self.memories_dir / ".last_processed.json"
-            
+
             if not last_processed_file.exists():
                 return True
-            
+
             import json
+
             last_processed = json.loads(last_processed_file.read_text())
-            
+
             file_key = str(file_path.relative_to(self.project_root))
             if file_key not in last_processed:
                 return True
-            
+
             last_processed_time = datetime.fromisoformat(last_processed[file_key])
-            file_modified_time = datetime.fromtimestamp(file_path.stat().st_mtime)
-            
+            file_modified_time = datetime.fromtimestamp(
+                file_path.stat().st_mtime, tz=timezone.utc
+            )
+
             return file_modified_time > last_processed_time
-            
+
         except Exception as e:
             self.logger.debug(f"Error checking rebuild status for {file_path}: {e}")
             return True  # Default to rebuilding if we can't determine
-    
+
     def _update_last_processed(self, file_path: Path):
         """Update last processed timestamp for file.
-        
+
         Args:
             file_path: Path to documentation file
         """
         try:
             self.memories_dir.mkdir(parents=True, exist_ok=True)
             last_processed_file = self.memories_dir / ".last_processed.json"
-            
+
             # Load existing data
             if last_processed_file.exists():
                 import json
+
                 last_processed = json.loads(last_processed_file.read_text())
             else:
                 last_processed = {}
-            
+
             # Update timestamp
             file_key = str(file_path.relative_to(self.project_root))
-            last_processed[file_key] = datetime.now().isoformat()
-            
+            last_processed[file_key] = datetime.now(timezone.utc).isoformat()
+
             # Save back
             import json
+
             last_processed_file.write_text(json.dumps(last_processed, indent=2))
-            
+
         except Exception as e:
             self.logger.warning(f"Error updating last processed timestamp: {e}")
-    
+
     def _clean_extracted_content(self, content: str) -> str:
         """Clean and normalize extracted content.
-        
+
         Args:
             content: Raw extracted content
-            
+
         Returns:
             Cleaned content string
         """
         # Remove markdown formatting
-        content = re.sub(r'[*_`#]+', '', content)
-        
+        content = re.sub(r"[*_`#]+", "", content)
+
         # Remove extra whitespace
-        content = re.sub(r'\s+', ' ', content).strip()
-        
+        content = re.sub(r"\s+", " ", content).strip()
+
         # Remove common prefixes that don't add value
-        content = re.sub(r'^(?:note:|tip:|important:|warning:)\s*', '', content, flags=re.IGNORECASE)
-        
+        content = re.sub(
+            r"^(?:note:|tip:|important:|warning:)\s*", "", content, flags=re.IGNORECASE
+        )
+
         # Truncate to memory limit (with ellipsis if needed)
         if len(content) > 95:  # Leave room for ellipsis
             content = content[:95] + "..."
-        
+
         return content
-    
+
     def _is_valid_memory_content(self, content: str) -> bool:
         """Validate if content is suitable for memory storage.
-        
+
         Args:
             content: Content to validate
-            
+
         Returns:
             True if content is valid for memory
         """
         # Must have minimum length
         if len(content) < 10:
             return False
-        
+
         # Must contain actionable information
-        actionable_words = ['use', 'avoid', 'ensure', 'follow', 'implement', 'check', 'must', 'should', 'never', 'always']
+        actionable_words = [
+            "use",
+            "avoid",
+            "ensure",
+            "follow",
+            "implement",
+            "check",
+            "must",
+            "should",
+            "never",
+            "always",
+        ]
         if not any(word in content.lower() for word in actionable_words):
             return False
-        
+
         # Avoid overly generic content
-        generic_phrases = ['this is', 'this document', 'see above', 'as mentioned', 'for more info']
-        if any(phrase in content.lower() for phrase in generic_phrases):
-            return False
-        
-        return True
-    
-    def _deduplicate_extracted_items(self, items: List[Dict[str, Any]]) -> List[Dict[str, Any]]:
+        generic_phrases = [
+            "this is",
+            "this document",
+            "see above",
+            "as mentioned",
+            "for more info",
+        ]
+        return not any(phrase in content.lower() for phrase in generic_phrases)
+
+    def _deduplicate_extracted_items(
+        self, items: List[Dict[str, Any]]
+    ) -> List[Dict[str, Any]]:
         """Remove near-duplicate extracted items.
-        
+
         Args:
             items: List of extracted items
-            
+
         Returns:
             Deduplicated list
         """
         from difflib import SequenceMatcher
-        
+
         unique_items = []
-        
+
         for item in items:
             content = item.get("content", "")
             is_duplicate = False
-            
+
             # Check against existing unique items
             for unique_item in unique_items:
                 unique_content = unique_item.get("content", "")
-                similarity = SequenceMatcher(None, content.lower(), unique_content.lower()).ratio()
-                
+                similarity = SequenceMatcher(
+                    None, content.lower(), unique_content.lower()
+                ).ratio()
+
                 if similarity > 0.8:  # 80% similarity threshold
                     is_duplicate = True
                     break
-            
+
             if not is_duplicate:
                 unique_items.append(item)
-        
-        return unique_items
+
+        return unique_items