ckanext-csvwmapandtransform 0.0.1__py3-none-any.whl

ckanext/csvwmapandtransform/templates/csvwmapandtransform/transform.html

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+{% extends "package/base.html" %}
+
+{% set logged_in = true if c.userobj else false %}
+{% set res = resource %}
+
+{%- block styles %}
+{{ super() }}
+{% asset 'csvwmapandtransform/style' %}
+{% endblock %}
+
+{% block breadcrumb_content_selected %}{% endblock %}
+
+{% block breadcrumb_content %}
+{{ super() }}
+{% if res %}
+<li>{% link_for h.resource_display_name(res)|truncate(30), named_route=pkg.type ~ '_resource.read', id=pkg.name,
+  resource_id=res.id %}</li>
+<li{% block breadcrumb_edit_selected %} class="active" {% endblock %}><a href="">{{ _('Transform') }}</a></li>
+  {% endif %}
+  {% endblock %}
+
+  {% block content_action %}
+  {% if res %}
+  {% link_for _('View resource'), named_route=pkg.type ~ '_resource.read', id=pkg.name, resource_id=res.id, class_='btn
+  btn-default', icon='eye' %}
+  {% endif %}
+  {% endblock %}
+
+  {% block content_primary_nav %}
+  <!-- {{ h.build_nav_icon(pkg.type ~ '_resource.edit', _('Edit resource'), id=pkg.name, resource_id=res.id, icon='pencil') }}
+  {% block inner_primary_nav %}{% endblock %}
+  {{ h.build_nav_icon(pkg.type ~ '_resource.views', _('Views'), id=pkg.name, resource_id=res.id, icon='chart-bar') }} -->
+  {% endblock %}
+
+  {% block primary_content_inner %}
+  <h1>{% block form_title %}{{ _('Transform Status') }}{% endblock %}</h1>
+  <div id="ajax-status" data-module="csvwmapandtransform" data-api-url="{{ status_url }}">
+    {% block form %}
+    <form class="add-to-group" method="post">
+      {{ h.csrf_input() }}
+      <div class="col-12 d-flex align-items-center justify-content-between">
+        <div class="d-flex align-items-center">
+          <button class="btn btn-secondary me-2 {% if not
+                      service_status %}disabled{% endif %}" name="extract/update" type="submit">
+            <i class="fa fa-refresh"></i> {{ _('Run Transformation') }}
+          </button>
+          <!-- <button class="btn btn-danger invisible" name="delete" type="submit">
+            <i class="fa fa-trash"></i> {{ _('Delete') }}
+          </button> -->
+        </div>
+        <!-- Status Indicator Section -->
+        <style>
+          .indicator {
+            width: 20px;
+            height: 20px;
+            border-radius: 50%;
+            background-color: red;
+            /* Default: Service unavailable */
+          }
+        </style>
+        <div class="d-flex align-items-center">
+          <div id="service-indicator" class="indicator" data-bs-toggle="tooltip"
+            title="{{ _('The status of the service (Green means available, Red means unavailable)') }}" {% if
+            service_status %} style="background-color: green;" {% endif %}>
+          </div>
+        </div>
+      </div>
+    </form>
+    {% endblock %}
+    <hr class="mt-0">
+    <div class="invisible" name=status>
+      <table class="table table-bordered">
+        <colgroup>
+          <col width="150">
+          <col>
+        </colgroup>
+        <tr>
+          <th>{{ _('Status') }}</th>
+          <td>{{status.status}}</td>
+        </tr>
+        <tr>
+          <th>{{ _('Last updated') }}</th>
+          {% if status.status %}
+          <td><span class="date" title="{{ h.render_datetime(status.last_updated, with_hours=True) }}">{{
+              h.time_ago_from_timestamp(status.last_updated) }}</span></td>
+          {% else %}
+          <td>{{ _('Never') }}</td>
+          {% endif %}
+        </tr>
+      </table>
+  
+      <h3>{{ _('Graph Update Log') }}</h3>
+      <ul class="activity" name="log">
+      </ul>
+    </div>
+  </div>  
+  {% endblock %}
+
+  {% block secondary_content %}
+  {% snippet 'package/snippets/resource_info.html', res=res %}
+  {% snippet 'package/snippets/resources.html', pkg=pkg, active=res.id %}
+  {% endblock %}
+
+  csvwmapandtransform 
+  {%- block scripts %}
+  {{ super() }}
+  {% asset 'csvwmapandtransform/js' %}
+  {% endblock %}

ckanext/csvwmapandtransform/templates/package/resource_read.html

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+{% ckan_extends %}
+
+{% block action_manage %}
+{{ super() }}
+{% if h.csvwmapandtransform_show_tools(res) %}
+<li>{% link_for _('Transform'), named_route='csvwmapandtransform.transform', id=pkg.name, resource_id=res.id, class_='btn btn-secondary', icon='play' %}</li>
+{% endif %}
+{% endblock action_manage %}

ckanext/csvwmapandtransform/templates/package/snippets/resource_item.html

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+{% ckan_extends %}
+
+{% block resource_item_explore_links %}
+{{ super() }}
+{% if not url_is_edit and h.csvwmapandtransform_show_tools(res) %}
+{% if res.url and h.is_url(res.url) %}
+<li>
+  <a href="{{ url }}/map" class="dropdown-item  resource-url-maptransform-create" target="_blank" rel="noreferrer">
+    <i class="fa fa-external-link"></i>
+    {{ _('Create Mapping') }}
+  </a>
+</li>
+{% if h.check_access('csvwmapandtransform_transform',res) %}
+<li>
+  <a href="{{ url }}/transform" class="dropdown-item  resource-url-maptransform-run" target="_blank" rel="noreferrer">
+    <i class="fa fa-external-link"></i>
+    {{ _('Transform') }}
+  </a>
+</li>
+{% endif %}
+{% endif %}
+{% endif %}
+{% endblock %}

ckanext/csvwmapandtransform/views.py

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+import json
+import os
+
+import ckan.lib.base as base
+import ckan.lib.helpers as core_helpers
+import ckan.plugins.toolkit as toolkit
+import requests
+from ckan.common import _
+from flask import Blueprint, Request, request
+from flask.views import MethodView
+
+from ckanext.csvwmapandtransform.helpers import csvwmapandtransform_service_available
+
+log = __import__("logging").getLogger(__name__)
+
+
+blueprint = Blueprint("csvwmapandtransform", __name__)
+
+
+class TransformView(MethodView):
+    def post(self, id: str, resource_id: str):
+        try:
+            toolkit.get_action("csvwmapandtransform_transform")(
+                {}, {"resource_id": resource_id}
+            )
+        except toolkit.ObjectNotFound:
+            base.abort(404, "Dataset not found")
+        except toolkit.NotAuthorized:
+            base.abort(403, _("Not authorized to see this page"))
+        except toolkit.ValidationError:
+            log.debug(toolkit.ValidationError)
+
+        return core_helpers.redirect_to(
+            "csvwmapandtransform.transform", id=id, resource_id=resource_id
+        )
+
+    def get(self, id: str, resource_id: str):
+        try:
+            pkg_dict = toolkit.get_action("package_show")({}, {"id": id})
+            resource = toolkit.get_action("resource_show")({}, {"id": resource_id})
+
+            # backward compatibility with old templates
+            toolkit.g.pkg_dict = pkg_dict
+            toolkit.g.resource = resource
+
+            status = toolkit.get_action("csvwmapandtransform_transform_status")(
+                {}, {"resource_id": resource_id}
+            )
+        except toolkit.ObjectNotFound:
+            base.abort(404, "Resource not found")
+        except toolkit.NotAuthorized:
+            base.abort(403, _("Not authorized to see this page"))
+
+        return base.render(
+            "csvwmapandtransform/transform.html",
+            extra_vars={
+                "pkg_dict": pkg_dict,
+                "resource": resource,
+                "status": status,
+                "status_url": toolkit.url_for(
+                    "csvwmapandtransform.status",
+                    id=id,
+                    resource_id=resource_id,
+                    qualified=True,
+                ),
+                "service_status": csvwmapandtransform_service_available(),
+                "refresh_rate": 10,
+            },
+        )
+
+
+class CreateMapView(MethodView):
+    def post(self, id: str, resource_id: str):
+        return core_helpers.redirect_to(
+            "csvwmapandtransform.map", id=id, resource_id=resource_id
+        )
+
+    def get(self, id: str, resource_id: str):
+        try:
+            pkg_dict = toolkit.get_action("package_show")({}, {"id": id})
+            resource = toolkit.get_action("resource_show")({}, {"id": resource_id})
+
+            # backward compatibility with old templates
+            toolkit.g.pkg_dict = pkg_dict
+            toolkit.g.resource = resource
+        except toolkit.ObjectNotFound:
+            base.abort(404, "Dataset not found")
+        except toolkit.NotAuthorized:
+            base.abort(403, _("Not authorized to see this page"))
+        # iframe_url = toolkit.url_for(
+        #     "api.action",
+        #     ver=3,
+        #     logic_function="csvwmapandtransform_map",
+        #     qualified=True
+        # )
+        # iframe_url='http://docker-dev.iwm.fraunhofer.de:6002/'
+        iframe_url = toolkit.url_for(
+            "csvwmapandtransform.iframe_maptomethod",
+            id=id,
+            resource_id=resource_id,
+            qualified=True,
+        )
+        return base.render(
+            "csvwmapandtransform/create_mapping.html",
+            extra_vars={
+                "pkg_dict": pkg_dict,
+                "resource": resource,
+                "iframe_url": iframe_url,
+            },
+        )
+
+
+def iframe_maptomethod(id, resource_id):
+    # extra_vars['q'] = q = request.args.get('q', '')
+    # if 'data_url' in data_dict:
+    #     url = data_dict['data_url']
+    headers = {
+        "Content-Type": "application/json",
+        "Authorization": toolkit.config.get("ckanext.csvwmapandtransform.ckan_token"),
+        "Accept": "text/html",
+    }
+    resource_dict = toolkit.get_action("resource_show")({}, {"id": resource_id})
+
+    # log.debug(request.values)
+    data = {
+        "data_url": resource_dict["url"],
+        "method_url": "https://github.com/Mat-O-Lab/MSEO/raw/main/methods/DIN_EN_ISO_527-3.drawio.ttl",
+        "advanced-data_subject_super_class_uris-0": "http://www.w3.org/ns/csvw#Column",
+        "advanced-data_subject_super_class_uris-1": "http://www.w3.org/ns/oa#Annotation",
+        "advanced-data_mapping_predicate_uri": "http://purl.obolibrary.org/obo/RO_0010002",
+        "advanced-method_object_super_class_uris-0": "https://spec.industrialontologies.org/ontology/core/Core/InformationContentEntity",
+        "advanced-method_object_super_class_uris-1": "http://purl.obolibrary.org/obo/BFO_0000008",
+    }
+    ssl_verify = toolkit.config.get("ckanext.csvwmapandtransform.ssl_verify")
+    if not ssl_verify:
+        requests.packages.urllib3.disable_warnings()
+    maptomethod_url = toolkit.config.get("ckanext.csvwmapandtransform.maptomethod_url")
+    html = requests.post(
+        url=maptomethod_url + "/create_mapper",
+        headers=headers,
+        data=json.dumps(data),
+        verify=ssl_verify,
+    )
+    # html=requests.post(url="http://docker-dev.iwm.fraunhofer.de:6002"+"/create_mapper", headers=headers, data=json.dumps(data))
+    html.raise_for_status()
+    result = html.text
+    # log.debug("Response from MapToMethod: {}".format(result))
+    return result
+
+
+class StatusView(MethodView):
+
+    def get(self, id: str, resource_id: str):
+        pkg_dict = {}
+        try:
+            pkg_dict = toolkit.get_action("package_show")({}, {"id": id})
+            status = toolkit.get_action("csvwmapandtransform_transform_status")(
+                {}, {"resource_id": resource_id}
+            )
+        except toolkit.ObjectNotFound:
+            base.abort(404, "Resource not found")
+        except toolkit.NotAuthorized:
+            base.abort(403, _("Not authorized to see this page"))
+
+        if status and "logs" in status.keys():
+            for index, item in enumerate(status["logs"]):
+                status["logs"][index]["timestamp"] = (
+                    core_helpers.time_ago_from_timestamp(item["timestamp"])
+                )
+                if item["level"] == "DEBUG":
+                    status["logs"][index]["alertlevel"] = "info"
+                    status["logs"][index]["icon"] = "bug-slash"
+                    status["logs"][index]["class"] = "success"
+                elif item["level"] == "INFO":
+                    status["logs"][index]["alertlevel"] = "info"
+                    status["logs"][index]["icon"] = "check"
+                    status["logs"][index]["class"] = "success"
+                else:
+                    status["logs"][index]["alertlevel"] = "error"
+                    status["logs"][index]["icon"] = "exclamation"
+                    status["logs"][index]["class"] = "failure"
+        return {"pkg_dict": pkg_dict, "status": status}
+
+
+blueprint.add_url_rule(
+    "/dataset/<id>/resource/<resource_id>/transform/status",
+    view_func=StatusView.as_view(str("status")),
+)
+
+blueprint.add_url_rule(
+    "/dataset/<id>/resource/<resource_id>/transform",
+    view_func=TransformView.as_view(str("transform")),
+)
+blueprint.add_url_rule(
+    "/dataset/<id>/resource/<resource_id>/map",
+    view_func=CreateMapView.as_view(str("map")),
+)
+
+blueprint.add_url_rule(
+    "/dataset/<id>/resource/<resource_id>/maptomethod", view_func=iframe_maptomethod
+)
+
+
+def get_blueprint():
+    return blueprint

ckanext_csvwmapandtransform-0.0.1-py3.14-nspkg.pth

@@ -0,0 +1 @@
+import sys, types, os;p = os.path.join(sys._getframe(1).f_locals['sitedir'], *('ckanext',));importlib = __import__('importlib.util');__import__('importlib.machinery');m = sys.modules.setdefault('ckanext', importlib.util.module_from_spec(importlib.machinery.PathFinder.find_spec('ckanext', [os.path.dirname(p)])));m = m or sys.modules.setdefault('ckanext', types.ModuleType('ckanext'));mp = (m or []) and m.__dict__.setdefault('__path__',[]);(p not in mp) and mp.append(p)

ckanext_csvwmapandtransform-0.0.1.dist-info/METADATA

@@ -0,0 +1,121 @@
+Metadata-Version: 2.4
+Name: ckanext-csvwmapandtransform
+Version: 0.0.1
+Summary: CKAN extension facilitating YARRRML mappings in conjunction with RDFConverter to run automatic transforms matching best fitting maps as a background job.
+Home-page: https://github.com/Mat-O-Lab/ckanext-csvwmapandtransform
+Author: Thomas Hanke
+Author-email: Thomas Hanke <thomas.hanke@iwm.fraunhofer.de>
+License: AGPL
+Project-URL: Homepage, https://github.com/Mat-O-Lab/ckanext-csvwmapandtransform
+Keywords: CKAN,CSVW,CSV,JSON-LD
+Classifier: Development Status :: 4 - Beta
+Classifier: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)
+Classifier: Programming Language :: Python :: 3.7
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Requires-Python: >=3.7
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: ckanapi
+Requires-Dist: requests>=2.4.2
+Provides-Extra: dev
+Requires-Dist: pytest; extra == "dev"
+Requires-Dist: pytest-ckan; extra == "dev"
+Dynamic: license-file
+
+[![Tests](https://github.com/Mat-O-Lab/ckanext-csvwmapandtransform/actions/workflows/test.yml/badge.svg)](https://github.com/Mat-O-Lab/ckanext-csvwmapandtransform/actions/workflows/test.yml)
+
+# ckanext-csvwmapandtransform
+
+Extension automatically generating csvw metadata for uploaded textual tabular data. It uploads the data of the first table documented into a datastore for the source csv file.
+
+## Requirements
+Needs a running instance of the [MapToMethod Application](https://github.com/Mat-O-Lab/MapToMethod) and [RDFConverter Application](https://github.com/Mat-O-Lab/RDFConverter)
+Point at it through env variables.
+Also needed is a Api Token for an account with the right privaledges to make the background job work on private datasets and ressources.
+
+```bash
+CSVWMAPANDTRANSFORM_TOKEN=${CKAN_API_TOKEN}
+MAPTOMETHOD_CONTAINER_NAME="ckan_maptomethod"
+MAPTOMETHOD_APP_PORT=5002
+# must be reachable from outside container net or iframe wil not work 
+CKAN_MAPTOMETHOD_URL=http://<CKAN_HOST>:${MAPTOMETHOD_APP_PORT}
+RDFCONVERTER_CONTAINER_NAME="ckan_rdfconverter"
+RDFCONVERTER_APP_PORT=5003
+CKAN_RDFCONVERTER_URL=http://${RDFCONVERTER_CONTAINER_NAME}:${RDFCONVERTER_APP_PORT}
+CSVWMAPANDTRANSFORM_SQLALCHEMY_URL=postgresql://<ckandbuser>:<ckandbpassword>@<db>/ckandb
+PARSER_PORT=3001
+MAPPER_PORT=4000
+CONVERTER_PORT=5000
+```
+
+You can set the default formats to run trusformation on by setting the env variable CSVWMAPANDTRANSFORM_FORMATS for example
+```bash
+CSVWMAPANDTRANSFORM_FORMATS="json-ld turtle n3 nt hext trig longturtle xml"
+```
+else it will react to the following  formats: "json json-ld turtle n3 nt hext trig longturtle xml"
+
+
+CSVWMAPANDTRANSFORM_FORMATS="json json-ld turtle n3 nt hext trig longturtle xml"
+
+Compatibility with core CKAN versions:
+
+| CKAN version    | Compatible?   |
+| --------------- | ------------- |
+| 2.9 and arlier  | not tested    |
+| 2.10             | yes    |
+| 2.11            | yes    |
+
+* "yes"
+* "not tested" - I can't think of a reason why it wouldn't work
+* "not yet" - there is an intention to get it working
+* "no"
+
+
+## Installation
+
+To install the extension:
+
+1. Activate your CKAN virtual environment, for example:
+```bash
+. /usr/lib/ckan/default/bin/activate
+```
+2. Use pip to install package
+```bash
+pip install ckanext-csvwmapandtransform
+```
+3. Add `csvwmapandtransform` to the `ckan.plugins` setting in your CKAN
+   config file (by default the config file is located at
+   `/etc/ckan/default/ckan.ini`).
+
+4. Restart CKAN. For example, if you've deployed CKAN with Apache on Ubuntu:
+```bash
+sudo service apache2 reload
+```
+
+## Developer installation
+
+To install ckanext-csvtocsvw for development, activate your CKAN virtualenv and
+do:
+```bash
+git clone https://github.com/Mat-O-Lab/ckanext-csvtocsvw.git
+cd ckanext-csvtocsvw
+python setup.py develop
+pip install -r dev-requirements.txt
+```
+
+## Tests
+
+To run the tests, do:
+```bash
+pytest --ckan-ini=test.ini
+```
+
+## License
+
+[AGPL](https://www.gnu.org/licenses/agpl-3.0.en.html)
+
+# Acknowledgments
+The authors would like to thank the Federal Government and the Heads of Government of the Länder for their funding and support within the framework of the [Platform Material Digital](https://www.materialdigital.de) consortium. Funded by the German [Federal Ministry of Education and Research (BMBF)](https://www.bmbf.de/bmbf/en/) through the [MaterialDigital](https://www.bmbf.de/SharedDocs/Publikationen/de/bmbf/5/31701_MaterialDigital.pdf?__blob=publicationFile&v=5) Call in Project [KupferDigital](https://www.materialdigital.de/project/1) - project id 13XP5119.
+

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+ckanext_csvwmapandtransform-0.0.1.dist-info/licenses/LICENSE,sha256=2lWcRAHjsQhqavGNnR30Ymxq3GJ9BaYL_dnfGO_-WFA,34500
+ckanext_csvwmapandtransform-0.0.1.dist-info/METADATA,sha256=vwkP49brN9L6f2ETrYQzus35UAosm5eZhJQhfPctDEg,4688
+ckanext_csvwmapandtransform-0.0.1.dist-info/WHEEL,sha256=YCfwYGOYMi5Jhw2fU4yNgwErybb2IX5PEwBKV4ZbdBo,91
+ckanext_csvwmapandtransform-0.0.1.dist-info/entry_points.txt,sha256=T-gUgTQoMeBkVeVM91x0mryuaZhHMWDPJ2v-z5-Bm_s,155
+ckanext_csvwmapandtransform-0.0.1.dist-info/namespace_packages.txt,sha256=5yjNwq-s42weaiMMUuA5lZ45g99ANsfcRBCvac1JMS4,8
+ckanext_csvwmapandtransform-0.0.1.dist-info/top_level.txt,sha256=5yjNwq-s42weaiMMUuA5lZ45g99ANsfcRBCvac1JMS4,8
+ckanext_csvwmapandtransform-0.0.1.dist-info/RECORD,,

ckanext_csvwmapandtransform-0.0.1.dist-info/WHEEL

@@ -0,0 +1,5 @@
+Wheel-Version: 1.0
+Generator: setuptools (82.0.0)
+Root-Is-Purelib: true
+Tag: py3-none-any
+

ckanext_csvwmapandtransform-0.0.1.dist-info/entry_points.txt

@@ -0,0 +1,5 @@
+[babel.extractors]
+ckan = ckan.lib.extract:extract_ckan
+
+[ckan.plugins]
+csvwmapandtransform = ckanext.csvwmapandtransform.plugin:CsvwMapAndTransformPlugin