cg 84.0.0__py3-none-any.whl → 84.0.1__py3-none-any.whl

cg/__init__.py

@@ -1,2 +1,2 @@
 __title__ = "cg"
-__version__ = "84.0.0"
+__version__ = "84.0.1"

cg/constants/constants.py

@@ -164,6 +164,12 @@ class GenomeVersion(StrEnum):
     HG38 = "hg38"
 
 
+class BedVersionGenomeVersion(StrEnum):
+    HG19 = "hg19"
+    HG38 = "hg38"
+    CFAM3 = "cfam3"
+
+
 class SampleType(StrEnum):
     TUMOR: str = "tumor"
     NORMAL: str = "normal"

cg/store/crud/create.py

@@ -192,7 +192,7 @@ class CreateMixin(ReadHandler):
     def add_bed_version(self, bed: Bed, version: int, filename: str, shortname: str) -> BedVersion:
         """Build a new bed version record."""
         bed_version: BedVersion = BedVersion(
-            version=version, filename=filename, shortname=shortname
+            version=version, filename=filename, shortname=shortname, genome_version="hg19"
         )
         bed_version.bed = bed
         return bed_version

cg/store/models.py

@@ -22,6 +22,7 @@ from sqlalchemy.orm.attributes import InstrumentedAttribute
 from cg.constants import DataDelivery, Priority, SequencingRunDataAvailability, Workflow
 from cg.constants.archiving import PDC_ARCHIVE_LOCATION
 from cg.constants.constants import (
+    BedVersionGenomeVersion,
     CaseActions,
     ControlOptions,
     SequencingQCStatus,
@@ -335,7 +336,12 @@ class BedVersion(Base):
     """Model for bed target captures versions"""
 
     __tablename__ = "bed_version"
-    __table_args__ = (UniqueConstraint("bed_id", "version", name="_app_version_uc"),)
+    __table_args__ = (
+        UniqueConstraint("bed_id", "version", name="_app_version_uc"),
+        UniqueConstraint(
+            "shortname", "version", "genome_version", name="shortname_version_genome_version_uc"
+        ),
+    )
 
     id: Mapped[PrimaryKeyInt]
     shortname: Mapped[Str64]
@@ -343,7 +349,9 @@ class BedVersion(Base):
     filename: Mapped[Str256]
     checksum: Mapped[Str32 | None]
     panel_size: Mapped[int | None]
-    genome_version: Mapped[Str32 | None]
+    genome_version: Mapped[BedVersionGenomeVersion] = mapped_column(
+        types.Enum(*(genome_version.value for genome_version in BedVersionGenomeVersion))
+    )
     designer: Mapped[Str256 | None]
     comment: Mapped[Text | None]
     created_at: Mapped[datetime | None] = mapped_column(default=datetime.now)

{cg-84.0.0.dist-info → cg-84.0.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cg
-Version: 84.0.0
+Version: 84.0.1
 Summary: Clinical Genomics command center
 Requires-Python: >=3.11,<3.13
 Classifier: Programming Language :: Python

{cg-84.0.0.dist-info → cg-84.0.1.dist-info}/RECORD

@@ -1,4 +1,4 @@
-cg/__init__.py,sha256=-0zb_Vkke33twQaAco0uQC7O2Ll3XJ-mQnXVj4OaNnc,40
+cg/__init__.py,sha256=QATHnUBhjQg1gdiTUzAuoLIAXxbjzsBt8FK_l6YZFtw,40
 cg/apps/__init__.py,sha256=pYf0vxo4iYQqURzFRYzqpOCdV8Cm9MWx0GHvJOz0EMg,315
 cg/apps/coverage/__init__.py,sha256=dJtsmNf8tODE2-VEomMIoYA7ugLYZAk_upsfOQCZeF8,27
 cg/apps/coverage/api.py,sha256=e_ozC3QeNKoEfpjjMaL-XjeBLtz-JySWccrtw0E9mLM,2940
@@ -194,7 +194,7 @@ cg/constants/archiving.py,sha256=_M4-9mu_d5PpZLdnvYTxGDKR-YwQNl6GxP05AM9XIPs,253
 cg/constants/backup.py,sha256=geZvQbYkPgN_P1vv5jn0ktCEdH5pqs9RA-fGZPruaNs,38
 cg/constants/cli_options.py,sha256=4Lk2jOki9TWA48PC5YDI1iNNJJ--9HrfwXUsuWqkYAE,690
 cg/constants/compression.py,sha256=hY8Ws7r0uFhDD10GDYjTN1nFeKWnekRGlOpM14g-yZ4,469
-cg/constants/constants.py,sha256=REhV4-snyfivwtVp53eYsxJ2Rz7PlAxUUEHb5LSmMe0,6815
+cg/constants/constants.py,sha256=B4XCn_CH4G-fphYvUIJV0UREgznVQXikoqe7dcTKBBQ,6913
 cg/constants/delivery.py,sha256=RHoyt81K8GIKVGX-ctTjRTRpOYYAs4BDsS3JJSDvcfs,5389
 cg/constants/demultiplexing.py,sha256=xX3bhRieLHSXP6yQBOm0iT1h53gUSNKd4R7Zq7TORT4,7483
 cg/constants/devices.py,sha256=qP98IxkL0N-k2hIQmQuSP-_BxGEy_c-tjIg9RyfPL-s,254
@@ -874,7 +874,7 @@ cg/store/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/store/api/data_classes.py,sha256=vgJehK0zm3SdB4LAQAWvTjoCHfos4N8_Vf0DDshrAnM,289
 cg/store/base.py,sha256=qmIjuWuq_wryBfGoSZny9nvqZj7Hl8N23hcdQ7Hss5I,6885
 cg/store/crud/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/store/crud/create.py,sha256=DrwCPqPCAEM3vBZwvLg1JsNHXDPg5y9_EBVhhbJm9ig,22621
+cg/store/crud/create.py,sha256=ZvPsvlaLKwY9_mNaf51hdMi3Ear2H37O2Eob2PLZmc8,22644
 cg/store/crud/delete.py,sha256=TlpoVWvUQMaRfy5bk-icFf9SSi_0Ir6XpFcAiM22DB0,1386
 cg/store/crud/read.py,sha256=UJ1NLkK3k682v8xk4NFJyPXC2ik-zsYshG6098Yy0aQ,78809
 cg/store/crud/update.py,sha256=FZvOPebNnkWICu1N4gTdFeiMcuTUPglgCDfaxE6G288,6262
@@ -903,7 +903,7 @@ cg/store/filters/status_panel_filters.py,sha256=qMYhIsrF9G3mjCvL9b9O2l_cmD3SfPWh
 cg/store/filters/status_pool_filters.py,sha256=XcYqe2z5k_q09xpp4cleDMQ4Q3o2y7UPCkB0QUkl1ck,4308
 cg/store/filters/status_sample_filters.py,sha256=mRpt_ik7niMjBo9K7pP8cmdfDMdr0B3I6Tt2MWXkLoc,9656
 cg/store/filters/status_user_filters.py,sha256=sMwKeWqgEtqv8gyhbN_Uf5huPUxbOt5qEqMWVu67Zys,1328
-cg/store/models.py,sha256=YTz2rCR8myl_kA-sjOS4Xau2gmY1-ocG6g4W6T1BVT0,44401
+cg/store/models.py,sha256=movmAB6h5SbxaPTfRK1entP1S9ayKt64v8oOTSL3Dk4,44702
 cg/store/store.py,sha256=mz1TfKPlanH2uQyhZdwe_8VKg0IdFolmromKLu668IY,630
 cg/utils/__init__.py,sha256=gGjdV2l_hfWFCTybU6dwDk_FcItM88EIHNPaX6g1qUk,30
 cg/utils/calculations.py,sha256=zLVJO6nNw6n7AW7fHZI56UnQ23lqJrShB4Hh2ow6-TQ,349
@@ -922,7 +922,7 @@ cg/utils/flask/enum.py,sha256=xwNVtFPkSzoloJctLHu7obRyxcng1GJrhkeYkqwf9tw,1052
 cg/utils/mapping.py,sha256=oZpZW2kgsbtAP2FZ7RtRPELiEE1zZk_nAGisHGtCOUo,491
 cg/utils/time.py,sha256=_VOglhrFEZ5cwHK1U1g36SdwzB7UvV-Nvlt4ymuZUho,1501
 cg/utils/utils.py,sha256=RciI_UhWcnG_pMZrmQZ1ZYb-O1N0DweTYMmhE0SIRgQ,1410
-cg-84.0.0.dist-info/METADATA,sha256=CBtOiLTIEUPklgHRGi26_vu_dZqtde_Iq8sj4FiPcEE,4939
-cg-84.0.0.dist-info/WHEEL,sha256=kJCRJT_g0adfAJzTx2GUMmS80rTJIVHRCfG0DQgLq3o,88
-cg-84.0.0.dist-info/entry_points.txt,sha256=q5f47YQQGltzK_xnIq1mDopRXXEItr85Xe1BCtG-Wts,39
-cg-84.0.0.dist-info/RECORD,,
+cg-84.0.1.dist-info/METADATA,sha256=5J1kH9CRXPbjM0gK6jpoHAybsvSv1zSJAp7dJa3mYrA,4939
+cg-84.0.1.dist-info/WHEEL,sha256=kJCRJT_g0adfAJzTx2GUMmS80rTJIVHRCfG0DQgLq3o,88
+cg-84.0.1.dist-info/entry_points.txt,sha256=q5f47YQQGltzK_xnIq1mDopRXXEItr85Xe1BCtG-Wts,39
+cg-84.0.1.dist-info/RECORD,,