cg 83.18.1__py3-none-any.whl → 83.19.0__py3-none-any.whl

cg/__init__.py

@@ -1,2 +1,2 @@
 __title__ = "cg"
-__version__ = "83.18.1"
+__version__ = "83.19.0"

cg/apps/crunchy/crunchy.py

@@ -1,8 +1,8 @@
 """
-    Module for interacting with crunchy to perform:
-        1. Compressing: FASTQ to SPRING
-        2. Decompressing: SPRING to FASTQ
-    along with the helper methods.
+Module for interacting with crunchy to perform:
+    1. Compressing: FASTQ to SPRING
+    2. Decompressing: SPRING to FASTQ
+along with the helper methods.
 """
 
 import logging

cg/apps/demultiplex/sample_sheet/sample_sheet_creator.py

@@ -1,4 +1,4 @@
-""" Create a sample sheet for NovaSeq flow cells."""
+"""Create a sample sheet for NovaSeq flow cells."""
 
 import logging
 

cg/apps/environ.py

@@ -1,4 +1,4 @@
-""" Ask questions to the shell """
+"""Ask questions to the shell"""
 
 import getpass
 import os

cg/apps/housekeeper/hk.py

@@ -1,4 +1,4 @@
-""" Module to decouple cg code from Housekeeper code """
+"""Module to decouple cg code from Housekeeper code"""
 
 import logging
 import os

cg/apps/mip/__init__.py

@@ -1 +1 @@
-""" Export MIP API """
+"""Export MIP API"""

cg/apps/mutacc_auto.py

@@ -1,5 +1,5 @@
 """
-    Module for mutacc-auto API
+Module for mutacc-auto API
 """
 
 import copy

cg/cli/delete/base.py

@@ -1,4 +1,4 @@
-"""CLI for deleting records in statusDB """
+"""CLI for deleting records in statusDB"""
 
 import logging
 
@@ -7,10 +7,7 @@ import rich_click as click
 from cg.cli.delete.case import delete_case
 from cg.cli.delete.cases import delete_cases
 from cg.cli.delete.illumina_sequencing_run import delete_illumina_run
-from cg.cli.delete.observations import (
-    delete_available_observations,
-    delete_observations,
-)
+from cg.cli.delete.observations import delete_available_observations, delete_observations
 from cg.cli.utils import CLICK_CONTEXT_SETTINGS
 
 LOG = logging.getLogger(__name__)

cg/cli/upload/nipt/base.py

@@ -1,4 +1,4 @@
-""" Upload NIPT results via the CLI"""
+"""Upload NIPT results via the CLI"""
 
 import logging
 import traceback

cg/cli/workflow/balsamic/umi.py

@@ -1,4 +1,4 @@
-"""CLI support to create config and/or start BALSAMIC """
+"""CLI support to create config and/or start BALSAMIC"""
 
 import logging
 import traceback

cg/constants/pacbio.py

@@ -14,6 +14,7 @@ class PacBioDirsAndFiles:
     STATISTICS_DIR: str = "statistics"
     UNZIPPED_REPORTS_DIR: str = "unzipped_reports"
     METADATA_DIR: str = "metadata"
+    METADATA_FILE_SUFFIX: str = "metadata.xml"
     RUN_IS_VALID: str = "is_valid"
 
 
@@ -77,7 +78,7 @@ class BarcodeMetricsAliases:
     BARCODED_HIFI_READS_PERCENTAGE: str = "barcode.percent_barcoded_reads"
     BARCODED_HIFI_YIELD: str = "barcode.barcoded_bases"
     BARCODED_HIFI_YIELD_PERCENTAGE: str = "barcode.percent_barcoded_bases"
-    BARCODED_MEAN_READ_LENGTH: str = "barcode.n_barcoded_readlength_mean"
+    BARCODED_MEAN_READ_LENGTH: str = "barcode.mean_read_length"
     UNBARCODED_HIFI_READS: str = "barcode.n_unbarcoded_reads"
     UNBARCODED_HIFI_YIELD: str = "barcode.unbarcoded_bases"
     UNBARCODED_HIFI_MEAN_READ_LENGTH: str = "barcode.mean_unbarcoded_read_length"
@@ -100,6 +101,7 @@ class PacBioHousekeeperTags:
     LOADING_REPORT: str = "loading-report"
     RAWDATA_REPORT: str = "raw-data-report"
     DATASETS_REPORT: str = "datasets-report"
+    METADATA: str = "smrt-link-metadata"
 
 
 class PacBioBundleTypes:
@@ -115,6 +117,7 @@ file_pattern_to_bundle_type: dict[str, str] = {
     PacBioDirsAndFiles.RAW_DATA_REPORT: PacBioBundleTypes.SMRT_CELL,
     PacBioDirsAndFiles.SMRTLINK_DATASETS_REPORT: PacBioBundleTypes.SMRT_CELL,
     f"{PacBioDirsAndFiles.HIFI_READS}.*{FileExtensions.BAM}$": PacBioBundleTypes.SAMPLE,
+    f".*{PacBioDirsAndFiles.METADATA_FILE_SUFFIX}$": PacBioBundleTypes.SMRT_CELL,
 }
 
 ZIPPED_REPORTS_PATTERN: str = "*reports.zip"

cg/meta/backup/backup.py

@@ -1,4 +1,4 @@
-""" Module for retrieving flow cells from backup."""
+"""Module for retrieving flow cells from backup."""
 
 import logging
 import subprocess

cg/meta/upload/mutacc.py

@@ -1,5 +1,5 @@
 """
-    Module to upload cases to mutacc
+Module to upload cases to mutacc
 """
 
 import logging

cg/meta/workflow/microsalt/constants.py

@@ -1,4 +1,3 @@
 from cg.constants.constants import FileExtensions
 
-
 QUALITY_REPORT_FILE_NAME: str = f"QC_done{FileExtensions.JSON}"

cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/tomte_params_file_creator.py

@@ -37,7 +37,7 @@ class TomteParamsFileCreator(ParamsFileCreator):
             input=sample_sheet_path,
             outdir=case_run_directory,
             gene_panel_clinical_filter=Path(case_run_directory, ScoutExportFileName.PANELS),
-            tissue=self._get_case_source_type(case_id),  # type:ignore
+            tissue=self._get_case_source_type(case_id),  # type: ignore
             genome=GenomeVersion.HG38,
         ).model_dump()
 

cg/services/deliver_files/file_formatter/files/concatenation_service.py

@@ -1,24 +1,21 @@
 import logging
-from pathlib import Path
 import re
+from pathlib import Path
 
-from cg.constants.constants import ReadDirection, FileFormat, FileExtensions
+from cg.constants.constants import FileExtensions, ReadDirection
+from cg.services.deliver_files.file_fetcher.models import SampleFile
+from cg.services.deliver_files.file_formatter.destination.models import FormattedFile
 from cg.services.deliver_files.file_formatter.files.abstract import FileFormatter
 from cg.services.deliver_files.file_formatter.files.models import FastqFile
+from cg.services.deliver_files.file_formatter.files.sample_service import FileManager
 from cg.services.deliver_files.file_formatter.path_name.abstract import PathNameFormatter
-
+from cg.services.deliver_files.file_formatter.path_name.nested_structure import (
+    NestedStructurePathFormatter,
+)
 from cg.services.fastq_concatenation_service.fastq_concatenation_service import (
     FastqConcatenationService,
 )
 from cg.services.fastq_concatenation_service.utils import generate_concatenated_fastq_delivery_path
-from cg.services.deliver_files.file_fetcher.models import SampleFile
-from cg.services.deliver_files.file_formatter.destination.models import FormattedFile
-from cg.services.deliver_files.file_formatter.files.sample_service import (
-    FileManager,
-)
-from cg.services.deliver_files.file_formatter.path_name.nested_structure import (
-    NestedStructurePathFormatter,
-)
 from cg.utils.files import get_all_files_in_directory_tree
 
 LOG = logging.getLogger(__name__)
@@ -279,7 +276,7 @@ class SampleFileConcatenationFormatter(FileFormatter):
 
     @staticmethod
     def _validate_sample_fastq_file_share_same_directory(
-        sample_fastq_files: dict[str, list[FastqFile]]
+        sample_fastq_files: dict[str, list[FastqFile]],
     ) -> None:
         """
         Assert that all fastq files for a sample share the same directory.

cg/services/pdc_service/pdc_service.py

@@ -1,4 +1,4 @@
-""" Module to group PDC related commands."""
+"""Module to group PDC related commands."""
 
 import logging
 from subprocess import CalledProcessError

cg/services/run_devices/pacbio/data_transfer_service/dto.py

@@ -65,6 +65,8 @@ class PacBioSampleSequencingMetricsDTO(BaseModel):
 class PacBioSequencingRunDTO(BaseModel):
     instrument_name: RevioNames
     run_id: str
+    run_name: str
+    unique_id: str
 
 
 class PacBioDTOs(PostProcessingDTOs):

cg/services/run_devices/pacbio/data_transfer_service/utils.py

@@ -82,4 +82,6 @@ def get_sequencing_run_dto(
     return PacBioSequencingRunDTO(
         instrument_name=metrics.dataset_metrics.instrument_name,  # type: ignore - pydantic will convert to correct type
         run_id=run_data.run_id,
+        run_name=metrics.metadata.run_name,
+        unique_id=metrics.metadata.unique_id,
     )

cg/services/run_devices/pacbio/housekeeper_service/pacbio_houskeeper_service.py

@@ -86,6 +86,7 @@ class PacBioHousekeeperService(PostProcessingHKService):
             PacBioDirsAndFiles.RAW_DATA_REPORT: [PacBioHousekeeperTags.RAWDATA_REPORT],
             PacBioDirsAndFiles.SMRTLINK_DATASETS_REPORT: [PacBioHousekeeperTags.DATASETS_REPORT],
             f"{PacBioDirsAndFiles.HIFI_READS}.*{FileExtensions.BAM}$": [AlignmentFileTag.BAM],
+            f".*{PacBioDirsAndFiles.METADATA_FILE_SUFFIX}$": [PacBioHousekeeperTags.METADATA],
         }
         return get_item_by_pattern_in_source(source=file_path.name, pattern_map=file_pattern_to_tag)
 

cg/services/run_devices/pacbio/metrics_parser/metrics_parser.py

@@ -15,6 +15,7 @@ from cg.services.run_devices.exc import (
 from cg.services.run_devices.pacbio.metrics_parser.models import (
     BarcodeMetrics,
     ControlMetrics,
+    MetadataMetrics,
     PacBioMetrics,
     PolymeraseMetrics,
     ProductivityMetrics,
@@ -23,6 +24,7 @@ from cg.services.run_devices.pacbio.metrics_parser.models import (
     SmrtlinkDatasetsMetrics,
 )
 from cg.services.run_devices.pacbio.metrics_parser.utils import (
+    get_parsed_metadata_file,
     get_parsed_metrics_from_file_name,
     get_parsed_sample_metrics,
 )
@@ -63,6 +65,7 @@ class PacBioMetricsParser(PostProcessingMetricsParser):
         barcodes_metrics: BarcodeMetrics = get_parsed_metrics_from_file_name(
             metrics_files=metrics_files, file_name=PacBioDirsAndFiles.BARCODES_REPORT
         )
+        metadata_metrics: MetadataMetrics = get_parsed_metadata_file(metrics_files)
         sample_metrics: list[SampleMetrics] = get_parsed_sample_metrics(metrics_files)
         LOG.debug(f"All metrics parsed for run {run_data.run_id}")
         return PacBioMetrics(
@@ -72,5 +75,6 @@ class PacBioMetricsParser(PostProcessingMetricsParser):
             polymerase=polymerase_metrics,
             dataset_metrics=dataset_metrics,
             barcodes=barcodes_metrics,
+            metadata=metadata_metrics,
             samples=sample_metrics,
         )

cg/services/run_devices/pacbio/metrics_parser/models.py

@@ -135,7 +135,7 @@ class BarcodeMetrics(RunMetrics):
         ..., alias=BarcodeMetricsAliases.BARCODED_HIFI_YIELD_PERCENTAGE
     )
     barcoded_hifi_mean_read_length: int = Field(
-        ..., alias=BarcodeMetricsAliases.UNBARCODED_HIFI_MEAN_READ_LENGTH
+        ..., alias=BarcodeMetricsAliases.BARCODED_MEAN_READ_LENGTH
     )
     unbarcoded_hifi_reads: int = Field(..., alias=BarcodeMetricsAliases.UNBARCODED_HIFI_READS)
     unbarcoded_hifi_yield: int = Field(..., alias=BarcodeMetricsAliases.UNBARCODED_HIFI_YIELD)
@@ -156,6 +156,13 @@ class SampleMetrics(RunMetrics):
     sample_internal_id: str = Field(..., alias=SampleMetricsAliases.SAMPLE_INTERNAL_ID)
 
 
+class MetadataMetrics(BaseModel):
+    """Model that holds metadata for a specific run."""
+
+    run_name: str
+    unique_id: str
+
+
 class PacBioMetrics(RunMetrics):
     """Model that holds all relevant PacBio metrics."""
 
@@ -165,4 +172,5 @@ class PacBioMetrics(RunMetrics):
     polymerase: PolymeraseMetrics
     dataset_metrics: SmrtlinkDatasetsMetrics
     barcodes: BarcodeMetrics
+    metadata: MetadataMetrics
     samples: list[SampleMetrics]

cg/services/run_devices/pacbio/metrics_parser/utils.py

@@ -1,13 +1,17 @@
 from pathlib import Path
 from typing import Any, Type
+from xml.etree import ElementTree
+from xml.etree.ElementTree import Element
 
 from cg.constants.constants import FileFormat
 from cg.constants.pacbio import MetricsFileFields, PacBioDirsAndFiles
+from cg.exc import XMLError
 from cg.io.controller import ReadFile
 from cg.services.run_devices.pacbio.metrics_parser.models import (
     BarcodeMetrics,
     BaseMetrics,
     ControlMetrics,
+    MetadataMetrics,
     PolymeraseMetrics,
     ProductivityMetrics,
     ReadMetrics,
@@ -78,3 +82,24 @@ def get_parsed_sample_metrics(metrics_files: list[Path]) -> list[SampleMetrics]:
         MetricsFileFields.COLUMNS
     )
     return _parse_sample_data(sample_data)
+
+
+def get_parsed_metadata_file(metrics_files: list[Path]) -> MetadataMetrics:
+    namespaces: dict[str, str] = {
+        "pb": "http://pacificbiosciences.com/PacBioDataModel.xsd"  # NOSONAR
+    }
+    metadata_file: Path = get_file_with_pattern_from_list(
+        files=metrics_files, pattern=PacBioDirsAndFiles.METADATA_FILE_SUFFIX
+    )
+    root: Element = ElementTree.parse(metadata_file).getroot()
+    run: Element | None = root.find(".//pb:Run", namespaces=namespaces)
+    if run is not None:
+        run_name, unique_id = run.get("Name"), run.get("UniqueId")
+        if run_name and unique_id:
+            return MetadataMetrics(run_name=run_name, unique_id=unique_id)
+        else:
+            raise XMLError(
+                f"'Run' element is missing either 'Name' or 'UniqueId' in {metadata_file}"
+            )
+    else:
+        raise XMLError(f"No 'Run' element found in {metadata_file}")

cg/services/run_devices/pacbio/run_file_manager/run_file_manager.py

@@ -20,7 +20,18 @@ class PacBioRunFileManager(RunFileManager):
         """Get the file paths required by the PacBioMetricsParser."""
         run_path: Path = run_data.full_path
         validate_files_or_directories_exist([run_path])
-        return self._get_report_files(run_path)
+        unzipped_dir: Path = self._get_unzipped_reports_dir(run_path)
+        files_to_parse: list[Path] = [
+            Path(unzipped_dir, PacBioDirsAndFiles.BARCODES_REPORT),
+            Path(unzipped_dir, PacBioDirsAndFiles.CONTROL_REPORT),
+            Path(unzipped_dir, PacBioDirsAndFiles.LOADING_REPORT),
+            Path(unzipped_dir, PacBioDirsAndFiles.RAW_DATA_REPORT),
+            Path(unzipped_dir, PacBioDirsAndFiles.SMRTLINK_DATASETS_REPORT),
+            self._get_ccs_report_file(run_path),
+            self._get_metadata_file(run_path),
+        ]
+        validate_files_or_directories_exist(files_to_parse)
+        return files_to_parse
 
     @handle_post_processing_errors(
         to_except=(FileNotFoundError,), to_raise=PostProcessingRunFileManagerError
@@ -53,19 +64,16 @@ class PacBioRunFileManager(RunFileManager):
             raise FileNotFoundError(f"No CCS report file found in {statistics_dir}")
         return files[0]
 
-    def _get_report_files(self, run_path: Path) -> list[Path]:
-        """Return the paths to the report files."""
-        unzipped_dir: Path = self._get_unzipped_reports_dir(run_path)
-        report_files: list[Path] = [
-            Path(unzipped_dir, PacBioDirsAndFiles.BARCODES_REPORT),
-            Path(unzipped_dir, PacBioDirsAndFiles.CONTROL_REPORT),
-            Path(unzipped_dir, PacBioDirsAndFiles.LOADING_REPORT),
-            Path(unzipped_dir, PacBioDirsAndFiles.RAW_DATA_REPORT),
-            Path(unzipped_dir, PacBioDirsAndFiles.SMRTLINK_DATASETS_REPORT),
-            self._get_ccs_report_file(run_path),
-        ]
-        validate_files_or_directories_exist(report_files)
-        return report_files
+    @staticmethod
+    def _get_metadata_file(run_path: Path) -> Path:
+        """Return the path to the metadata file."""
+        metadata_dir: Path = Path(run_path, PacBioDirsAndFiles.METADATA_DIR)
+        files: list[Path] = get_files_matching_pattern(
+            directory=metadata_dir, pattern=f"*{PacBioDirsAndFiles.METADATA_FILE_SUFFIX}"
+        )
+        if not files:
+            raise FileNotFoundError(f"No metadata file found in {metadata_dir}")
+        return files[0]
 
     @staticmethod
     def _remove_unassigned_bam_file(bam_files: list[Path]) -> list[Path]:

cg/services/slurm_upload_service/slurm_upload_service.py

@@ -1,4 +1,5 @@
 import logging
+
 from cg.apps.tb.api import TrailblazerAPI
 from cg.apps.tb.models import TrailblazerAnalysis
 from cg.constants.priority import SlurmQos
@@ -13,7 +14,6 @@ from cg.services.slurm_service.slurm_service import SlurmService
 from cg.services.slurm_upload_service.slurm_upload_config import SlurmUploadConfig
 from cg.services.slurm_upload_service.utils import get_quality_of_service
 
-
 LOG = logging.getLogger(__name__)
 
 

cg/store/crud/create.py

@@ -524,6 +524,8 @@ class CreateMixin(ReadHandler):
             sequencing_run = PacbioSequencingRun(
                 instrument_name=pacbio_sequencing_run_dto.instrument_name,
                 run_id=pacbio_sequencing_run_dto.run_id,
+                run_name=pacbio_sequencing_run_dto.run_name,
+                unique_id=pacbio_sequencing_run_dto.unique_id,
             )
             self.add_item_to_store(sequencing_run)
             return sequencing_run

cg/store/models.py

@@ -1186,11 +1186,13 @@ class PacbioSequencingRun(Base):
 
     id: Mapped[PrimaryKeyInt]
     run_id: Mapped[Str64] = mapped_column(unique=True)
+    run_name: Mapped[Str64 | None]
     processed: Mapped[bool] = mapped_column(default=False)
     comment: Mapped[Text] = mapped_column(default="")
     instrument_name: Mapped[RevioNames] = mapped_column(
         types.Enum(*(revio_name.value for revio_name in RevioNames))
     )
+    unique_id: Mapped[Str64 | None] = mapped_column(unique=True)
 
     smrt_cell_metrics: Mapped[list[PacbioSMRTCellMetrics]] = orm.relationship(
         back_populates="sequencing_run"

cg/utils/click/EnumChoice.py

@@ -1,4 +1,4 @@
-""" class to use when the click option is an Enum
+"""class to use when the click option is an Enum
 based on suggestion https://github.com/pallets/click/issues/605#issuecomment-277539425
 """
 

cg/utils/enums.py

@@ -1,4 +1,4 @@
-"""Enum classes has string or list values that behaves like defined """
+"""Enum classes has string or list values that behaves like defined"""
 
 from enum import Enum
 

cg/utils/files.py

@@ -27,7 +27,7 @@ def get_file_in_directory(directory: Path, file_name: str) -> Path:
     raise FileNotFoundError(f"File {file_name} not found in {directory}")
 
 
-def get_file_with_pattern_from_list(files: list[Path], pattern: str) -> Path | None:
+def get_file_with_pattern_from_list(files: list[Path], pattern: str) -> Path:
     """
     Return the path whose name matches a pattern from a list of paths.
     Raises:

{cg-83.18.1.dist-info → cg-83.19.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cg
-Version: 83.18.1
+Version: 83.19.0
 Summary: Clinical Genomics command center
 Requires-Python: >=3.11,<3.13
 Classifier: Programming Language :: Python

{cg-83.18.1.dist-info → cg-83.19.0.dist-info}/RECORD

@@ -1,9 +1,9 @@
-cg/__init__.py,sha256=6XcxVhrnpF1Wj7FSSXTP8ztarrCDzDLtp37Z7OoqYrI,41
+cg/__init__.py,sha256=4hMPPBeUot_KdOw9KDLt2qAqJgGSZIhsGn2wKZbA-JA,41
 cg/apps/__init__.py,sha256=pYf0vxo4iYQqURzFRYzqpOCdV8Cm9MWx0GHvJOz0EMg,315
 cg/apps/coverage/__init__.py,sha256=dJtsmNf8tODE2-VEomMIoYA7ugLYZAk_upsfOQCZeF8,27
 cg/apps/coverage/api.py,sha256=e_ozC3QeNKoEfpjjMaL-XjeBLtz-JySWccrtw0E9mLM,2940
 cg/apps/crunchy/__init__.py,sha256=wqpS8FrCNUnMTeaVxhw0Plq7gv0DGTVojGIyJlEUPeU,56
-cg/apps/crunchy/crunchy.py,sha256=XTXcWy0i-2LAqZyHYH6Nx3GFJhrXKyC3X5NSauzEvGg,6646
+cg/apps/crunchy/crunchy.py,sha256=_lxJNuwGuO2AKEC0SNKksXwV6jNmb89-keWZElOq4-8,6630
 cg/apps/crunchy/files.py,sha256=ZE7nEL0wN8pUrJMf3WboraLFmzTeefE7Nz8YDDcQqyM,4848
 cg/apps/crunchy/models.py,sha256=MOSMFmZ3u1ShUAIy2t229VUsE-5RCo1Z3ZBCZWIdAgM,430
 cg/apps/crunchy/sbatch.py,sha256=6TLFsj6ARPA4M8TTBYONqHmIk6RygsGvLDdPETMJwNc,910
@@ -15,7 +15,7 @@ cg/apps/demultiplex/sample_sheet/index.py,sha256=2eVkF96P4iX1EIK-rE2guNAUIVxQgX5
 cg/apps/demultiplex/sample_sheet/override_cycles_validator.py,sha256=nzik56xYtDuS_EPXISS3wLZxGLjppM6lRNUVyfGXuqA,6726
 cg/apps/demultiplex/sample_sheet/read_sample_sheet.py,sha256=JI4aQJhiDumB1XeBQ04SbONQibQfobu28O4-XVvf6pc,3343
 cg/apps/demultiplex/sample_sheet/sample_models.py,sha256=aymFExVkQ2BLtX5j-SGJhxTHz_9iKCVqlcVFV7h1fdk,6991
-cg/apps/demultiplex/sample_sheet/sample_sheet_creator.py,sha256=b8AXr4UmjPTSHNFKc9vEoFO4TDMhLjfdXtDccvd4nW4,6177
+cg/apps/demultiplex/sample_sheet/sample_sheet_creator.py,sha256=sz7bcdFqT2r4E1HghZ0rr5IHH11w98bAcLEYGasUMMQ,6176
 cg/apps/demultiplex/sample_sheet/sample_sheet_models.py,sha256=oaOGgzMfczKuLvXoIQimIee13PWEwEaDu3LFJ7MwQsE,1432
 cg/apps/demultiplex/sample_sheet/sample_sheet_validator.py,sha256=aNo10ccvKe4Hdge1ueEuECPzEPrAMP672X76Ljn1NOk,8358
 cg/apps/demultiplex/sample_sheet/utils.py,sha256=-FH8hLCHyEjOKIeTvrBpZzy5N4Il8sLw0WbdyOISo68,1988
@@ -24,14 +24,14 @@ cg/apps/demultiplex/sbatch.py,sha256=x7psttZ7PB8lYY6gAvj51cfe-d57weAUTOCjr88usv8
 cg/apps/downsample/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/apps/downsample/downsample.py,sha256=_r6vOigSZa00LxS5UcworYggrLnv1NWjQJzMu3nAPJk,6340
 cg/apps/downsample/utils.py,sha256=zgp14Z4mfg1g1XxqEUF2sfnFUrmPuOqVEJBwmX_HVSc,2125
-cg/apps/environ.py,sha256=zKNyux2O017rDIIdJm_X8TGDqDptzSoN0Tt2BlLxOck,261
+cg/apps/environ.py,sha256=ITz_WXJwCgefcxs2QoXBvXVHxeC2daO9326FOc2yNSo,259
 cg/apps/gens.py,sha256=dMEIZ0NcLP4IQTWJ6WqJWUlOk0yQ37D22VQ_4Hi2FU8,1514
 cg/apps/gt.py,sha256=_5Fm9Rj7Jkn0QzcUx9kXkIFHOEWU2ii7PgcIGuCnzUk,2379
 cg/apps/hermes/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/apps/hermes/hermes_api.py,sha256=CEes3Iq10siYMddcpXGy7kRONWkzQAJUFTcz-FxCL_E,3059
 cg/apps/hermes/models.py,sha256=sbutAX_bNCbh-hLwnpjqV01rq3AdbJel-NcGOBiCJAw,1298
 cg/apps/housekeeper/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/apps/housekeeper/hk.py,sha256=J8ZERed6J5mzbNHikCqo2hH6gnc4MYCdJHjUJZJQlEs,28642
+cg/apps/housekeeper/hk.py,sha256=O6r1ehPRMC6IXC82Gm1JN4SvNtmHQTCyUhLFvYkGdgk,28640
 cg/apps/housekeeper/models.py,sha256=rmR_8QHESsWkn5hbqnRtAtVje_M7YK33YkdG781KIY0,326
 cg/apps/invoice/__init__.py,sha256=1YWal0E1HPO5sdLOj9_JUwL_17Z2DSj7iJV5kEd8Q-4,32
 cg/apps/invoice/render.py,sha256=2U93Sdak_8v0j56qZLdcvBeofWO0ppiUqKNAaaCLCsU,4970
@@ -47,9 +47,9 @@ cg/apps/lims/sample_sheet.py,sha256=037nYVHtDzRPtvmbXAJK1zP1YjCcPOIE-2OEKJorX78,
 cg/apps/loqus.py,sha256=eIBslbC-YDhv1hUP99YfzT8b2aM44Qfu_buXN_ZxdXI,5082
 cg/apps/madeline/__init__.py,sha256=0vEgTYFvpWxfqaU1Fl8oJONqIxzi7eqnMVApkgFo0Fk,35
 cg/apps/madeline/api.py,sha256=PyjOX0wLk7pZWCUajpsA844wqCOw0fQfTEyNp_innS0,3213
-cg/apps/mip/__init__.py,sha256=l3TyXnP7G_lS_NVR828bCgR2McKUzyXBFoaPCy_Yl44,23
+cg/apps/mip/__init__.py,sha256=hQcrLZpKKto1c5tki4BMfKN7v-HDkG6KNe1Zozmwfzo,21
 cg/apps/mip/confighandler.py,sha256=V6eljnzbekQ4M98P8npVI8McPvbIN6z7DRo19Yo2c4Q,3564
-cg/apps/mutacc_auto.py,sha256=KRQRXP5yI_LTaBFnjLCXAGrhiAUna9eOPAHhiKbhDfk,2207
+cg/apps/mutacc_auto.py,sha256=8IcJIzdPEmHETGggy--j85TvHPjPq0jLQ74F4KaTLo0,2203
 cg/apps/orderform/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/apps/orderform/excel_orderform_parser.py,sha256=tvzh5YgHXwN7Ixffga6-xee_3gp7Fdg_0ai8iyvrU1M,10961
 cg/apps/orderform/json_orderform_parser.py,sha256=EoFcWotFVgvWIJNePXVdP7HVs8jgdwaxn6i0dcIQBvk,2922
@@ -79,7 +79,7 @@ cg/cli/compress/base.py,sha256=GSBDojXXz4yn6LzXj3RvmosIg3z1bjcPsv3r2ubQpWU,2344
 cg/cli/compress/fastq.py,sha256=lzckMgTmp6eqmJlyD82toceTW4s6bycajRVmnqXvnx8,6508
 cg/cli/compress/helpers.py,sha256=UF2hTtto80rvsU3n5eqF47oYyXp7qJeALh-qHaprTTg,7729
 cg/cli/delete/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/cli/delete/base.py,sha256=czdzYFjhunonn0Xi5TXbcKsCfjZWBhpXvaU2JoDpSbo,775
+cg/cli/delete/base.py,sha256=Vdz_G2sRbD--M2N90SxusyOto95M-Hh2yrZY2v_r-U0,761
 cg/cli/delete/case.py,sha256=R12mkYaZbyLoBXnc-Yz4XrFz8iFKtyCtmJnEmwcofj0,4815
 cg/cli/delete/cases.py,sha256=yJRdNna2MsvIcl3fAbs8tDfFs7PDEL_b9FCYdVW5RiQ,1911
 cg/cli/delete/illumina_sequencing_run.py,sha256=YVdRTRVUh1GANKGOIP7axhKCGTrvCXDvwq83mvX0muQ,741
@@ -123,7 +123,7 @@ cg/cli/upload/gens.py,sha256=gUki1iCS3swqTaZChRNLKoFNw2dIeCnMxfBXiAQS6Ow,1929
 cg/cli/upload/gisaid.py,sha256=AS-dsBYH8ECPiop77MXUqosVqtUD1LpnFAr0BnybChM,598
 cg/cli/upload/mutacc.py,sha256=46f0NSEPIfXChnxqSuPeuYrcKuapEY5o-1IMS4Q9KCk,2963
 cg/cli/upload/nipt/__init__.py,sha256=r1bbsGXlNU2acSs7A-g6cyLtYkVS_NqT-Q_Lx52EbqA,23
-cg/cli/upload/nipt/base.py,sha256=U_3tS2T1Lm7_9Ff0tTBA4GlcoCsZxWUb7qjIZe50gDo,2907
+cg/cli/upload/nipt/base.py,sha256=OOtluRLvG9GndMDhTL8UIa5lPeOIFvO2qi3cVnb065U,2906
 cg/cli/upload/nipt/ftp.py,sha256=M5ukDNEr4wMNX8Lga6ogsH8kuVsPqBb6ARNKoAeXkZk,2284
 cg/cli/upload/nipt/statina.py,sha256=k2NaQZdi36IIPNmI5wVdejfnWRYQAS1yLrm2C-evU6o,1637
 cg/cli/upload/observations/__init__.py,sha256=MVG3J0JFrq9aUmssbQccuN4laZsM89Lq7w1Lri1M6jU,112
@@ -138,7 +138,7 @@ cg/cli/workflow/balsamic/__init__.py,sha256=tAp9BLY37Gsg-jvTdgUEoP8lnaHW4I61tXfH
 cg/cli/workflow/balsamic/base.py,sha256=Eku6FROfv8XUAAMnt3F594BRuhhnU-GXVxeLMKzkf1I,7546
 cg/cli/workflow/balsamic/options.py,sha256=7SKjk3EmyB8saS34idmdpHRv0n5HSxu7jGVUT6s5ppA,404
 cg/cli/workflow/balsamic/pon.py,sha256=QAYiFy2IG_oFbpzsekQi8PxzQD9J-99pus9h0Kat_4Y,999
-cg/cli/workflow/balsamic/umi.py,sha256=Lw7VjVOh-wpnlnnQVR3oAlbjurvBIi1fFcZ8nEvb16c,7808
+cg/cli/workflow/balsamic/umi.py,sha256=I5Td6cs8koph42HIRAAjcD1oT4ZdY5LR96ZUZrKw6B0,7807
 cg/cli/workflow/base.py,sha256=AFM89EAnEekIl5Y3d90tBTGlFrkKCpHL1MsrzBp_OaE,1439
 cg/cli/workflow/commands.py,sha256=Obi8SvKXA_xxR9QJBQT7-_dHApyBEK1L16csTU7gLFw,14185
 cg/cli/workflow/fluffy/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -211,7 +211,7 @@ cg/constants/nf_analysis.py,sha256=x9hCQvamgolqC8Pd76d9sBrP36jWbfpZEcxv4-Rigic,2
 cg/constants/nipt.py,sha256=KGy7Y08jIUmT9FKKdjGzfRwvklAkOHRLKXqDOQx4aPc,19
 cg/constants/observations.py,sha256=Sjxo3R7DCkcMkSWNSeg2Sznkjr3werFRRsSREjd6CCU,3887
 cg/constants/orderforms.py,sha256=pLD_ufw11aE-Fn4x87el3F_KRITi2lbrgpBYU7eJgpM,2362
-cg/constants/pacbio.py,sha256=tn8bOlv2qbN2Vvcx0cQW_5lO9jifxcBGKEIPdpc1H3w,4816
+cg/constants/pacbio.py,sha256=dkSZEKlXGnj2zqfqXGNQU_R0fNo8yqMk2JAwTs2nQd4,4976
 cg/constants/paths.py,sha256=BG0Jnk_ic8K8UrMyDaAwI4PSb8N6xZ7jPIeYPrOI72g,96
 cg/constants/pdc.py,sha256=1eEP1HJ0qmJ4xfNEua9YajNMGZ-SdIBnfham3quE2ZA,252
 cg/constants/pedigree.py,sha256=TfVjnrLMXBAhi5-LWmt_KoNHuimu0mpQvabQaXTtPCU,160
@@ -247,7 +247,7 @@ cg/meta/archive/ddn/models.py,sha256=MOEkP7xi38KvabstCPUcPDU61UTg6BW6MUp3OPntbus
 cg/meta/archive/ddn/utils.py,sha256=uvmc--J3ZFq7cEA9Bp0OAJ_Ozz8Uc136bVqFbnPgxjo,1250
 cg/meta/archive/models.py,sha256=ULnAbrYflMszGLD0SdNh5cDvVHuAI7nLt0l13cr3Pmg,2024
 cg/meta/backup/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/meta/backup/backup.py,sha256=BZhubDN4Z7nGQjU7nrZEYPC-tJYsusSphNf2Ak93V9Y,5907
+cg/meta/backup/backup.py,sha256=ViWtC21bij0NYno4IfcCH-5aP4b76FFcXDC89kDAbEo,5906
 cg/meta/clean/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/meta/clean/api.py,sha256=Thz8mdZf4LwYi5plCVXzmTNK2MioHuwaT3UTNat8GYA,3487
 cg/meta/clean/clean_retrieved_spring_files.py,sha256=rg0waRLeultBMvJLHyu9HZt9SBKj-MveZt9cgHxu7V4,1841
@@ -327,7 +327,7 @@ cg/meta/upload/microsalt/microsalt_upload_api.py,sha256=NpQgt8Yogbr8Oa5zGDqQbiZe
 cg/meta/upload/mip/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/meta/upload/mip/mip_dna.py,sha256=1um0b7Bjb74pdxV_J_P7tcaYfX95W2FcCeTZpwms-FQ,2480
 cg/meta/upload/mip/mip_rna.py,sha256=_fecaG2S2YjMwMckTV7QGpyz7d8ZUaMgnIj0MZqjkr4,1349
-cg/meta/upload/mutacc.py,sha256=qYxQAJ0DG1yI8y49xyoGW2abazuNnZPbQuvRMdC5IDM,7294
+cg/meta/upload/mutacc.py,sha256=532llmYMzVqMZAasD47KgZCp8oF1m86HH0beDiF6KUc,7290
 cg/meta/upload/mutant/mutant.py,sha256=2BcpcEKrm9tv7NLHV4Svhb5BIcqzd6MaeW6FCWhY_cw,1135
 cg/meta/upload/nallo/nallo.py,sha256=Fmp1mpGpFfzRlj8qO1SsTqsGiIT_-OCvoWPY58Rvh_k,1821
 cg/meta/upload/nf_analysis.py,sha256=ToL9ekQArFY0x9ACyzwlITBwfrkpzSWrpOtOZF4apV0,1841
@@ -359,7 +359,7 @@ cg/meta/workflow/fastq.py,sha256=M3w5KrHGZtGb_hiMXA8IzY_beGJC-ztkqflhwTAgvp0,124
 cg/meta/workflow/fluffy.py,sha256=BktDMDw9TKZzdBi_Isojb-pxDrNk8QNfGYfx1MIdct4,11543
 cg/meta/workflow/jasen.py,sha256=T8edOEicQ8F2Hj3K5PTPinPzJxNBVn3hUhb2AKbLVSY,521
 cg/meta/workflow/microsalt/__init__.py,sha256=w-sspwtz6QJxFPLNU-K-dybcKQE_8HelzKG6kG-yCbY,70
-cg/meta/workflow/microsalt/constants.py,sha256=e_if9JDSpVgoCq8eanydMZ6twOm3wrGwvrwlQHf4ggQ,116
+cg/meta/workflow/microsalt/constants.py,sha256=FBaUBJQKtV2w5KXb0GKeoQOz9HFfr9XYiRwWIGttuLU,115
 cg/meta/workflow/microsalt/metrics_parser/__init__.py,sha256=ZevqLSVzWc_TzhU_MBos3CGfsZwtVpxLnyWm446obz0,174
 cg/meta/workflow/microsalt/metrics_parser/metrics_parser.py,sha256=vFxkooANyUCgeNYfbwiwz_v_BijhU0cLYZ_qRym1YN8,366
 cg/meta/workflow/microsalt/metrics_parser/models.py,sha256=icINJ7gaN8UOqV6jZ43fPVMuJCFvD7Vm-PXVIUN67-A,903
@@ -533,7 +533,7 @@ cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/nal
 cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/raredisease.py,sha256=yvoSt-Rf6bWQOU5rK_Bu-Sg96qWODfxf4CuATTK9L5g,4777
 cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/rnafusion.py,sha256=irQIT6CsEuGM6xWg_tBzT7ilaa4ubXlJRBLw2Ovkoi8,1501
 cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/taxprofiler.py,sha256=1anmBbsSqGAoYNfPmwt4nV3qe0NSi_DsC58kV2VBhTA,1507
-cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/tomte_params_file_creator.py,sha256=tbwAYcRAYBqbBVtzhYlrgB4utDrImroW3bR8vHxj3LI,2611
+cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/tomte_params_file_creator.py,sha256=talpcK1aKOgUtxhEg3tcvqrbMggZyTbrLgp4zZdbf6A,2612
 cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/utils.py,sha256=DQzuacJs0o4lVFk5voWBVmcfJleCsVTbHcduUc5k5mk,1247
 cg/services/analysis_starter/configurator/file_creators/nextflow/sample_sheet/creator.py,sha256=m7YBih9hPqoWIgW77B_3oQgmzdVp8BFkR0p3EZ0MQ9M,3698
 cg/services/analysis_starter/configurator/file_creators/nextflow/sample_sheet/nallo_sample_sheet_creator.py,sha256=yEGzm-3nIvOgIL8fT_ju23iY-Gp1JLRphu_SOx9DFrE,2497
@@ -591,7 +591,7 @@ cg/services/deliver_files/file_formatter/destination/models.py,sha256=VPtQuc4kRQ
 cg/services/deliver_files/file_formatter/files/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/services/deliver_files/file_formatter/files/abstract.py,sha256=fkNU5pq841mF-h1CM6ja14e1CojxG_iYaah26cDW_Io,460
 cg/services/deliver_files/file_formatter/files/case_service.py,sha256=uo6EexUmFjTwSsUX99_urN0ftx9C7Z3FzdjLl2cRw9s,3555
-cg/services/deliver_files/file_formatter/files/concatenation_service.py,sha256=uAJ-VfX08JlGThgtQF-BdEEP-78vGkIfT5YlJzIGHmw,14281
+cg/services/deliver_files/file_formatter/files/concatenation_service.py,sha256=AMkP_29JOcXfYD21IhsO6QYiw1WWtwfGf1CcUUqCRMU,14260
 cg/services/deliver_files/file_formatter/files/models.py,sha256=kQW-chLaQT6Pe3ORvXOY5fjErDyJ2qtmSNG8M7ttVwY,291
 cg/services/deliver_files/file_formatter/files/mutant_service.py,sha256=OOGADOb4kuYI3ABoVI-Kzkx_qR3X4sMzMXH-OGHRldM,6344
 cg/services/deliver_files/file_formatter/files/sample_service.py,sha256=y6qYFFlaY6wiHUxGatF8ccuavYn1hBFK_U5KKoXY1I8,2923
@@ -817,7 +817,7 @@ cg/services/orders/validation/rules/utils.py,sha256=6-fjv7jAlU78RwPguu9BTBFN7jHQ
 cg/services/orders/validation/service.py,sha256=t1WnCAwMKkZtHFRnROYZenShw946Ln_hM7gFCyq62Sg,4090
 cg/services/orders/validation/utils.py,sha256=BcO3FuD2HiDzLU8T-yvIRftccfjTxAfUaWkZgwFb2DI,2318
 cg/services/pdc_service/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/services/pdc_service/pdc_service.py,sha256=cqeVC4d11wQ-8kjXlszHgYPY_JS7sGCLLnPhDlU6MY0,2884
+cg/services/pdc_service/pdc_service.py,sha256=eF7sX5pNbB_e6EeYJUnuXQDQtoQxQCMPwXzZu-jmeD8,2883
 cg/services/run_devices/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/services/run_devices/abstract_classes.py,sha256=BN3txu4Le8eRDdZ0P5NGPk8ua467uy_jfGPpjbKxgds,3699
 cg/services/run_devices/abstract_models.py,sha256=hu8M8uk0ZStgohllutIxJUP5Hhjv7eUiLuejks2t0GM,377
@@ -828,19 +828,19 @@ cg/services/run_devices/pacbio/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5
 cg/services/run_devices/pacbio/data_storage_service/pacbio_store_service.py,sha256=5MXVrY3SxIQiMJIGD1iGap2nQWOyBNaoBBLHHEVIZbI,4723
 cg/services/run_devices/pacbio/data_transfer_service/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/services/run_devices/pacbio/data_transfer_service/data_transfer_service.py,sha256=XqJ6cJc2KfiI0svQFvZe8Hz4EcCDaggbvKkp6HBejag,2410
-cg/services/run_devices/pacbio/data_transfer_service/dto.py,sha256=gvHBj51eRRaGuvNj1UmXN4YhvG_22nc4IzTqqua9BAU,2018
-cg/services/run_devices/pacbio/data_transfer_service/utils.py,sha256=6bgCFipgh685iguIJkqSmxGx1KjRk8XZ-Qwi3KY-bDk,4270
+cg/services/run_devices/pacbio/data_transfer_service/dto.py,sha256=Mb3GlIHxuKTmjMA1LGT3T47QHmz7QP1Tf3Dmhmj9N-s,2055
+cg/services/run_devices/pacbio/data_transfer_service/utils.py,sha256=EEj0nD99TGYOQQAQM1LmoGEz36BX-A9L9VrxMzb7Jlg,4360
 cg/services/run_devices/pacbio/housekeeper_service/models.py,sha256=F1c7dID12XiR4TcyRq4mhRB5gWZz430z0h7sHKcni00,153
-cg/services/run_devices/pacbio/housekeeper_service/pacbio_houskeeper_service.py,sha256=6vpuKeft3dUOYocmXv7nRGrQ8ncX16T3Pd2w-2W_1l4,5341
+cg/services/run_devices/pacbio/housekeeper_service/pacbio_houskeeper_service.py,sha256=7zD_3KDyxWIxErg8fta1mkYyNjpqCX9Rq1JuZaRwORk,5436
 cg/services/run_devices/pacbio/metrics_parser/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/services/run_devices/pacbio/metrics_parser/metrics_parser.py,sha256=G6XWqlkLs8h2lRcsy9d4CXKJ6u-PeYGYy7K55lzeL2o,3266
-cg/services/run_devices/pacbio/metrics_parser/models.py,sha256=4BTxMv5d5eg2NSoBoZ8EwVqJyGuLTqHacgiSQ3AFL0E,7331
-cg/services/run_devices/pacbio/metrics_parser/utils.py,sha256=Y_Jsj-mnsuVF-iKZ7W1sJAuWqw25ayVonj9ktLHCNfA,3467
+cg/services/run_devices/pacbio/metrics_parser/metrics_parser.py,sha256=kX3gEO7aUnsnIPhdbYHpM8ym5dHWXi3ZZ16rnuyxuBI,3440
+cg/services/run_devices/pacbio/metrics_parser/models.py,sha256=52IxsGin6MpDMK67pDfTphyCZy9IMBmgbo-4frqglRc,7484
+cg/services/run_devices/pacbio/metrics_parser/utils.py,sha256=QrxjnHDN2lu2RzwuMS4D8WepAEvzZCMv8VmDg5MjWBU,4492
 cg/services/run_devices/pacbio/post_processing_service.py,sha256=Wa8t4rs_mqZdbqgil_ayX_lbhLsxCdH5r4Sg-njT-GI,4209
 cg/services/run_devices/pacbio/run_data_generator/pacbio_run_data_generator.py,sha256=i8UEtEOXAXDr7PQezTz-_40cHqdwddJ8c7fmA1iTQPk,1999
 cg/services/run_devices/pacbio/run_data_generator/run_data.py,sha256=h0TfMtHwyXlRp6SY8OCeTgKbDVcuC3925l0tftbrgZc,255
 cg/services/run_devices/pacbio/run_file_manager/models.py,sha256=C6kycBPx6YKNq2oFJOIhdrcPloi3QIBOrlbaAgeYzgs,192
-cg/services/run_devices/pacbio/run_file_manager/run_file_manager.py,sha256=xW8cKrLKh445hQnmtuIrvg6INs2lMSaDirG83fvimI4,5068
+cg/services/run_devices/pacbio/run_file_manager/run_file_manager.py,sha256=QDJKvMTwHNlP9ovU5wgqA8FbTx6xI0zdc26A1RY4W1M,5440
 cg/services/run_devices/pacbio/run_validator/pacbio_run_validator.py,sha256=d8fvmJcByEFPMnwqOe6mQsXXIO87WkXwfK9L_Bx7whg,3037
 cg/services/run_devices/pacbio/sequencing_runs_service.py,sha256=n_noNrPfOAUGizgTpE5n1ezZA0O92XAB9o_FYIzcus8,2145
 cg/services/run_devices/run_names/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -861,7 +861,7 @@ cg/services/slurm_service/slurm_cli_service.py,sha256=t-XZoAOPgL-eufwK0A6H8WJvGt
 cg/services/slurm_service/slurm_service.py,sha256=51HEECPZGMypDjEDqs02JKo_2ErwvxewjUYAyR_CLxo,242
 cg/services/slurm_upload_service/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/services/slurm_upload_service/slurm_upload_config.py,sha256=jfhn0CyMAib0AeX24OPuU_Xsh63jKHyXwo_2_N9FWKo,175
-cg/services/slurm_upload_service/slurm_upload_service.py,sha256=C7qe9ZD6FDWwTFoX9F5ETWUjgtRYG64IEjiz8iixED0,2074
+cg/services/slurm_upload_service/slurm_upload_service.py,sha256=950XQh6SYatbOq64sEzYiyRaNGRWCro9kOapJJqd_Pg,2074
 cg/services/slurm_upload_service/utils.py,sha256=BkFW8pj-4UZj9X7pBfBQusRIIfiEhqoIX0ZZg942T7A,203
 cg/services/validate_file_transfer_service/validate_file_transfer_service.py,sha256=D7D5rdNRc1mS1mtXZaUMtAjehfqImtZ814WOLxoYhOc,2990
 cg/services/web_services/application/models.py,sha256=_hIUC49RT1eA_p6Qkro6LaZBR1HlGA6dyTWR6mveFmA,99
@@ -874,7 +874,7 @@ cg/store/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/store/api/data_classes.py,sha256=vgJehK0zm3SdB4LAQAWvTjoCHfos4N8_Vf0DDshrAnM,289
 cg/store/base.py,sha256=qmIjuWuq_wryBfGoSZny9nvqZj7Hl8N23hcdQ7Hss5I,6885
 cg/store/crud/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/store/crud/create.py,sha256=QZiVB4TUsDKops2yqkzL8T82W-MXCBKwtBjnKZSWJ5M,22497
+cg/store/crud/create.py,sha256=DrwCPqPCAEM3vBZwvLg1JsNHXDPg5y9_EBVhhbJm9ig,22621
 cg/store/crud/delete.py,sha256=TlpoVWvUQMaRfy5bk-icFf9SSi_0Ir6XpFcAiM22DB0,1386
 cg/store/crud/read.py,sha256=UJ1NLkK3k682v8xk4NFJyPXC2ik-zsYshG6098Yy0aQ,78809
 cg/store/crud/update.py,sha256=FZvOPebNnkWICu1N4gTdFeiMcuTUPglgCDfaxE6G288,6262
@@ -903,26 +903,26 @@ cg/store/filters/status_panel_filters.py,sha256=qMYhIsrF9G3mjCvL9b9O2l_cmD3SfPWh
 cg/store/filters/status_pool_filters.py,sha256=XcYqe2z5k_q09xpp4cleDMQ4Q3o2y7UPCkB0QUkl1ck,4308
 cg/store/filters/status_sample_filters.py,sha256=mRpt_ik7niMjBo9K7pP8cmdfDMdr0B3I6Tt2MWXkLoc,9656
 cg/store/filters/status_user_filters.py,sha256=sMwKeWqgEtqv8gyhbN_Uf5huPUxbOt5qEqMWVu67Zys,1328
-cg/store/models.py,sha256=lgBbx8O0rqWTbxTPJkaKWSLs9JjFVAZ63e7_uEq9Vsg,44315
+cg/store/models.py,sha256=CzVK2iW16ygJFWjqIUvkia0j_XwvrYLB9EDy5C_4Xss,44415
 cg/store/store.py,sha256=mz1TfKPlanH2uQyhZdwe_8VKg0IdFolmromKLu668IY,630
 cg/utils/__init__.py,sha256=gGjdV2l_hfWFCTybU6dwDk_FcItM88EIHNPaX6g1qUk,30
 cg/utils/calculations.py,sha256=zLVJO6nNw6n7AW7fHZI56UnQ23lqJrShB4Hh2ow6-TQ,349
 cg/utils/checksum/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/utils/checksum/checksum.py,sha256=jRvL1f6TPV2QyhUBR-WUK7i67wB7a2FKcwrs6kr8GXI,1992
-cg/utils/click/EnumChoice.py,sha256=ogTT49nEAsu60YQeFLp1cCI9t6xzuxmVFA17za53cko,1669
+cg/utils/click/EnumChoice.py,sha256=rtdWcsvq_J0qsPkLEDQJaKJBgK5jzEuVON_HqwJYZro,1668
 cg/utils/click/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/utils/commands.py,sha256=D6tfGBGp3wQMXkNEhquSQ9ZyKzkMn8PvSGAllBVaZWQ,4344
 cg/utils/date.py,sha256=4aX7ZyyRfHHiNsA8yNYw2nzTON-yq3gQSypAEXHK4Wk,2192
 cg/utils/dict.py,sha256=Zr67gvr5_W1Lpe6_MUZDAegWa2oakXVW-JrZgiRcaAw,758
 cg/utils/email.py,sha256=VH15Ezbc_FgSOGJr9KvSiMaEU0TwNaZHVUXlRAaBzxs,1251
-cg/utils/enums.py,sha256=3-QFMKDDPU95o-pTDEAJvLUTf6tjsjQAQM3YDsYfxoU,134
-cg/utils/files.py,sha256=Gu1UmmMWODnYhvyoWxTrya-y9z8TNAGHoE8nrBzyr3c,4029
+cg/utils/enums.py,sha256=N9qaDTeu4BkqjKAY5QlF0qrVePl6zXIi6PvtxQ1ZWmo,133
+cg/utils/files.py,sha256=II2crwo8eqA4ODwxtsmkxKtXDkkXxpGAQDt3LDWF5F4,4022
 cg/utils/flask/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/utils/flask/enum.py,sha256=xwNVtFPkSzoloJctLHu7obRyxcng1GJrhkeYkqwf9tw,1052
 cg/utils/mapping.py,sha256=oZpZW2kgsbtAP2FZ7RtRPELiEE1zZk_nAGisHGtCOUo,491
 cg/utils/time.py,sha256=_VOglhrFEZ5cwHK1U1g36SdwzB7UvV-Nvlt4ymuZUho,1501
 cg/utils/utils.py,sha256=RciI_UhWcnG_pMZrmQZ1ZYb-O1N0DweTYMmhE0SIRgQ,1410
-cg-83.18.1.dist-info/METADATA,sha256=0wIHoWInpcMdWHPBW9WebN8SwMmVOSt-6fyGEOnVg-8,4940
-cg-83.18.1.dist-info/WHEEL,sha256=3ny-bZhpXrU6vSQ1UPG34FoxZBp3lVcvK0LkgUz6VLk,88
-cg-83.18.1.dist-info/entry_points.txt,sha256=q5f47YQQGltzK_xnIq1mDopRXXEItr85Xe1BCtG-Wts,39
-cg-83.18.1.dist-info/RECORD,,
+cg-83.19.0.dist-info/METADATA,sha256=-BIIGc9nF6oBbjCJu03ksxN0cbg-f1bhsnABalnt1wg,4940
+cg-83.19.0.dist-info/WHEEL,sha256=kJCRJT_g0adfAJzTx2GUMmS80rTJIVHRCfG0DQgLq3o,88
+cg-83.19.0.dist-info/entry_points.txt,sha256=q5f47YQQGltzK_xnIq1mDopRXXEItr85Xe1BCtG-Wts,39
+cg-83.19.0.dist-info/RECORD,,

{cg-83.18.1.dist-info → cg-83.19.0.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 2.3.0
+Generator: poetry-core 2.3.1
 Root-Is-Purelib: true
 Tag: py3-none-any