cg 83.18.1__py3-none-any.whl → 83.18.2__py3-none-any.whl

cg/__init__.py

@@ -1,2 +1,2 @@
 __title__ = "cg"
-__version__ = "83.18.1"
+__version__ = "83.18.2"

cg/apps/crunchy/crunchy.py

@@ -1,8 +1,8 @@
 """
-    Module for interacting with crunchy to perform:
-        1. Compressing: FASTQ to SPRING
-        2. Decompressing: SPRING to FASTQ
-    along with the helper methods.
+Module for interacting with crunchy to perform:
+    1. Compressing: FASTQ to SPRING
+    2. Decompressing: SPRING to FASTQ
+along with the helper methods.
 """
 
 import logging

cg/apps/demultiplex/sample_sheet/sample_sheet_creator.py

@@ -1,4 +1,4 @@
-""" Create a sample sheet for NovaSeq flow cells."""
+"""Create a sample sheet for NovaSeq flow cells."""
 
 import logging
 

cg/apps/environ.py

@@ -1,4 +1,4 @@
-""" Ask questions to the shell """
+"""Ask questions to the shell"""
 
 import getpass
 import os

cg/apps/housekeeper/hk.py

@@ -1,4 +1,4 @@
-""" Module to decouple cg code from Housekeeper code """
+"""Module to decouple cg code from Housekeeper code"""
 
 import logging
 import os

cg/apps/mip/__init__.py

@@ -1 +1 @@
-""" Export MIP API """
+"""Export MIP API"""

cg/apps/mutacc_auto.py

@@ -1,5 +1,5 @@
 """
-    Module for mutacc-auto API
+Module for mutacc-auto API
 """
 
 import copy

cg/cli/delete/base.py

@@ -1,4 +1,4 @@
-"""CLI for deleting records in statusDB """
+"""CLI for deleting records in statusDB"""
 
 import logging
 
@@ -7,10 +7,7 @@ import rich_click as click
 from cg.cli.delete.case import delete_case
 from cg.cli.delete.cases import delete_cases
 from cg.cli.delete.illumina_sequencing_run import delete_illumina_run
-from cg.cli.delete.observations import (
-    delete_available_observations,
-    delete_observations,
-)
+from cg.cli.delete.observations import delete_available_observations, delete_observations
 from cg.cli.utils import CLICK_CONTEXT_SETTINGS
 
 LOG = logging.getLogger(__name__)

cg/cli/upload/nipt/base.py

@@ -1,4 +1,4 @@
-""" Upload NIPT results via the CLI"""
+"""Upload NIPT results via the CLI"""
 
 import logging
 import traceback

cg/cli/workflow/balsamic/umi.py

@@ -1,4 +1,4 @@
-"""CLI support to create config and/or start BALSAMIC """
+"""CLI support to create config and/or start BALSAMIC"""
 
 import logging
 import traceback

cg/meta/backup/backup.py

@@ -1,4 +1,4 @@
-""" Module for retrieving flow cells from backup."""
+"""Module for retrieving flow cells from backup."""
 
 import logging
 import subprocess

cg/meta/upload/mutacc.py

@@ -1,5 +1,5 @@
 """
-    Module to upload cases to mutacc
+Module to upload cases to mutacc
 """
 
 import logging

cg/meta/workflow/microsalt/constants.py

@@ -1,4 +1,3 @@
 from cg.constants.constants import FileExtensions
 
-
 QUALITY_REPORT_FILE_NAME: str = f"QC_done{FileExtensions.JSON}"

cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/tomte_params_file_creator.py

@@ -37,7 +37,7 @@ class TomteParamsFileCreator(ParamsFileCreator):
             input=sample_sheet_path,
             outdir=case_run_directory,
             gene_panel_clinical_filter=Path(case_run_directory, ScoutExportFileName.PANELS),
-            tissue=self._get_case_source_type(case_id),  # type:ignore
+            tissue=self._get_case_source_type(case_id),  # type: ignore
             genome=GenomeVersion.HG38,
         ).model_dump()
 

cg/services/deliver_files/file_formatter/files/concatenation_service.py

@@ -1,24 +1,21 @@
 import logging
-from pathlib import Path
 import re
+from pathlib import Path
 
-from cg.constants.constants import ReadDirection, FileFormat, FileExtensions
+from cg.constants.constants import FileExtensions, ReadDirection
+from cg.services.deliver_files.file_fetcher.models import SampleFile
+from cg.services.deliver_files.file_formatter.destination.models import FormattedFile
 from cg.services.deliver_files.file_formatter.files.abstract import FileFormatter
 from cg.services.deliver_files.file_formatter.files.models import FastqFile
+from cg.services.deliver_files.file_formatter.files.sample_service import FileManager
 from cg.services.deliver_files.file_formatter.path_name.abstract import PathNameFormatter
-
+from cg.services.deliver_files.file_formatter.path_name.nested_structure import (
+    NestedStructurePathFormatter,
+)
 from cg.services.fastq_concatenation_service.fastq_concatenation_service import (
     FastqConcatenationService,
 )
 from cg.services.fastq_concatenation_service.utils import generate_concatenated_fastq_delivery_path
-from cg.services.deliver_files.file_fetcher.models import SampleFile
-from cg.services.deliver_files.file_formatter.destination.models import FormattedFile
-from cg.services.deliver_files.file_formatter.files.sample_service import (
-    FileManager,
-)
-from cg.services.deliver_files.file_formatter.path_name.nested_structure import (
-    NestedStructurePathFormatter,
-)
 from cg.utils.files import get_all_files_in_directory_tree
 
 LOG = logging.getLogger(__name__)
@@ -279,7 +276,7 @@ class SampleFileConcatenationFormatter(FileFormatter):
 
     @staticmethod
     def _validate_sample_fastq_file_share_same_directory(
-        sample_fastq_files: dict[str, list[FastqFile]]
+        sample_fastq_files: dict[str, list[FastqFile]],
     ) -> None:
         """
         Assert that all fastq files for a sample share the same directory.

cg/services/pdc_service/pdc_service.py

@@ -1,4 +1,4 @@
-""" Module to group PDC related commands."""
+"""Module to group PDC related commands."""
 
 import logging
 from subprocess import CalledProcessError

cg/services/slurm_upload_service/slurm_upload_service.py

@@ -1,4 +1,5 @@
 import logging
+
 from cg.apps.tb.api import TrailblazerAPI
 from cg.apps.tb.models import TrailblazerAnalysis
 from cg.constants.priority import SlurmQos
@@ -13,7 +14,6 @@ from cg.services.slurm_service.slurm_service import SlurmService
 from cg.services.slurm_upload_service.slurm_upload_config import SlurmUploadConfig
 from cg.services.slurm_upload_service.utils import get_quality_of_service
 
-
 LOG = logging.getLogger(__name__)
 
 

cg/utils/click/EnumChoice.py

@@ -1,4 +1,4 @@
-""" class to use when the click option is an Enum
+"""class to use when the click option is an Enum
 based on suggestion https://github.com/pallets/click/issues/605#issuecomment-277539425
 """
 

cg/utils/enums.py

@@ -1,4 +1,4 @@
-"""Enum classes has string or list values that behaves like defined """
+"""Enum classes has string or list values that behaves like defined"""
 
 from enum import Enum
 

{cg-83.18.1.dist-info → cg-83.18.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cg
-Version: 83.18.1
+Version: 83.18.2
 Summary: Clinical Genomics command center
 Requires-Python: >=3.11,<3.13
 Classifier: Programming Language :: Python

{cg-83.18.1.dist-info → cg-83.18.2.dist-info}/RECORD

@@ -1,9 +1,9 @@
-cg/__init__.py,sha256=6XcxVhrnpF1Wj7FSSXTP8ztarrCDzDLtp37Z7OoqYrI,41
+cg/__init__.py,sha256=engG_O4quyGSUu6rT8Zt5XT0_NEToVxRj9NEyQRTS04,41
 cg/apps/__init__.py,sha256=pYf0vxo4iYQqURzFRYzqpOCdV8Cm9MWx0GHvJOz0EMg,315
 cg/apps/coverage/__init__.py,sha256=dJtsmNf8tODE2-VEomMIoYA7ugLYZAk_upsfOQCZeF8,27
 cg/apps/coverage/api.py,sha256=e_ozC3QeNKoEfpjjMaL-XjeBLtz-JySWccrtw0E9mLM,2940
 cg/apps/crunchy/__init__.py,sha256=wqpS8FrCNUnMTeaVxhw0Plq7gv0DGTVojGIyJlEUPeU,56
-cg/apps/crunchy/crunchy.py,sha256=XTXcWy0i-2LAqZyHYH6Nx3GFJhrXKyC3X5NSauzEvGg,6646
+cg/apps/crunchy/crunchy.py,sha256=_lxJNuwGuO2AKEC0SNKksXwV6jNmb89-keWZElOq4-8,6630
 cg/apps/crunchy/files.py,sha256=ZE7nEL0wN8pUrJMf3WboraLFmzTeefE7Nz8YDDcQqyM,4848
 cg/apps/crunchy/models.py,sha256=MOSMFmZ3u1ShUAIy2t229VUsE-5RCo1Z3ZBCZWIdAgM,430
 cg/apps/crunchy/sbatch.py,sha256=6TLFsj6ARPA4M8TTBYONqHmIk6RygsGvLDdPETMJwNc,910
@@ -15,7 +15,7 @@ cg/apps/demultiplex/sample_sheet/index.py,sha256=2eVkF96P4iX1EIK-rE2guNAUIVxQgX5
 cg/apps/demultiplex/sample_sheet/override_cycles_validator.py,sha256=nzik56xYtDuS_EPXISS3wLZxGLjppM6lRNUVyfGXuqA,6726
 cg/apps/demultiplex/sample_sheet/read_sample_sheet.py,sha256=JI4aQJhiDumB1XeBQ04SbONQibQfobu28O4-XVvf6pc,3343
 cg/apps/demultiplex/sample_sheet/sample_models.py,sha256=aymFExVkQ2BLtX5j-SGJhxTHz_9iKCVqlcVFV7h1fdk,6991
-cg/apps/demultiplex/sample_sheet/sample_sheet_creator.py,sha256=b8AXr4UmjPTSHNFKc9vEoFO4TDMhLjfdXtDccvd4nW4,6177
+cg/apps/demultiplex/sample_sheet/sample_sheet_creator.py,sha256=sz7bcdFqT2r4E1HghZ0rr5IHH11w98bAcLEYGasUMMQ,6176
 cg/apps/demultiplex/sample_sheet/sample_sheet_models.py,sha256=oaOGgzMfczKuLvXoIQimIee13PWEwEaDu3LFJ7MwQsE,1432
 cg/apps/demultiplex/sample_sheet/sample_sheet_validator.py,sha256=aNo10ccvKe4Hdge1ueEuECPzEPrAMP672X76Ljn1NOk,8358
 cg/apps/demultiplex/sample_sheet/utils.py,sha256=-FH8hLCHyEjOKIeTvrBpZzy5N4Il8sLw0WbdyOISo68,1988
@@ -24,14 +24,14 @@ cg/apps/demultiplex/sbatch.py,sha256=x7psttZ7PB8lYY6gAvj51cfe-d57weAUTOCjr88usv8
 cg/apps/downsample/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/apps/downsample/downsample.py,sha256=_r6vOigSZa00LxS5UcworYggrLnv1NWjQJzMu3nAPJk,6340
 cg/apps/downsample/utils.py,sha256=zgp14Z4mfg1g1XxqEUF2sfnFUrmPuOqVEJBwmX_HVSc,2125
-cg/apps/environ.py,sha256=zKNyux2O017rDIIdJm_X8TGDqDptzSoN0Tt2BlLxOck,261
+cg/apps/environ.py,sha256=ITz_WXJwCgefcxs2QoXBvXVHxeC2daO9326FOc2yNSo,259
 cg/apps/gens.py,sha256=dMEIZ0NcLP4IQTWJ6WqJWUlOk0yQ37D22VQ_4Hi2FU8,1514
 cg/apps/gt.py,sha256=_5Fm9Rj7Jkn0QzcUx9kXkIFHOEWU2ii7PgcIGuCnzUk,2379
 cg/apps/hermes/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/apps/hermes/hermes_api.py,sha256=CEes3Iq10siYMddcpXGy7kRONWkzQAJUFTcz-FxCL_E,3059
 cg/apps/hermes/models.py,sha256=sbutAX_bNCbh-hLwnpjqV01rq3AdbJel-NcGOBiCJAw,1298
 cg/apps/housekeeper/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/apps/housekeeper/hk.py,sha256=J8ZERed6J5mzbNHikCqo2hH6gnc4MYCdJHjUJZJQlEs,28642
+cg/apps/housekeeper/hk.py,sha256=O6r1ehPRMC6IXC82Gm1JN4SvNtmHQTCyUhLFvYkGdgk,28640
 cg/apps/housekeeper/models.py,sha256=rmR_8QHESsWkn5hbqnRtAtVje_M7YK33YkdG781KIY0,326
 cg/apps/invoice/__init__.py,sha256=1YWal0E1HPO5sdLOj9_JUwL_17Z2DSj7iJV5kEd8Q-4,32
 cg/apps/invoice/render.py,sha256=2U93Sdak_8v0j56qZLdcvBeofWO0ppiUqKNAaaCLCsU,4970
@@ -47,9 +47,9 @@ cg/apps/lims/sample_sheet.py,sha256=037nYVHtDzRPtvmbXAJK1zP1YjCcPOIE-2OEKJorX78,
 cg/apps/loqus.py,sha256=eIBslbC-YDhv1hUP99YfzT8b2aM44Qfu_buXN_ZxdXI,5082
 cg/apps/madeline/__init__.py,sha256=0vEgTYFvpWxfqaU1Fl8oJONqIxzi7eqnMVApkgFo0Fk,35
 cg/apps/madeline/api.py,sha256=PyjOX0wLk7pZWCUajpsA844wqCOw0fQfTEyNp_innS0,3213
-cg/apps/mip/__init__.py,sha256=l3TyXnP7G_lS_NVR828bCgR2McKUzyXBFoaPCy_Yl44,23
+cg/apps/mip/__init__.py,sha256=hQcrLZpKKto1c5tki4BMfKN7v-HDkG6KNe1Zozmwfzo,21
 cg/apps/mip/confighandler.py,sha256=V6eljnzbekQ4M98P8npVI8McPvbIN6z7DRo19Yo2c4Q,3564
-cg/apps/mutacc_auto.py,sha256=KRQRXP5yI_LTaBFnjLCXAGrhiAUna9eOPAHhiKbhDfk,2207
+cg/apps/mutacc_auto.py,sha256=8IcJIzdPEmHETGggy--j85TvHPjPq0jLQ74F4KaTLo0,2203
 cg/apps/orderform/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/apps/orderform/excel_orderform_parser.py,sha256=tvzh5YgHXwN7Ixffga6-xee_3gp7Fdg_0ai8iyvrU1M,10961
 cg/apps/orderform/json_orderform_parser.py,sha256=EoFcWotFVgvWIJNePXVdP7HVs8jgdwaxn6i0dcIQBvk,2922
@@ -79,7 +79,7 @@ cg/cli/compress/base.py,sha256=GSBDojXXz4yn6LzXj3RvmosIg3z1bjcPsv3r2ubQpWU,2344
 cg/cli/compress/fastq.py,sha256=lzckMgTmp6eqmJlyD82toceTW4s6bycajRVmnqXvnx8,6508
 cg/cli/compress/helpers.py,sha256=UF2hTtto80rvsU3n5eqF47oYyXp7qJeALh-qHaprTTg,7729
 cg/cli/delete/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/cli/delete/base.py,sha256=czdzYFjhunonn0Xi5TXbcKsCfjZWBhpXvaU2JoDpSbo,775
+cg/cli/delete/base.py,sha256=Vdz_G2sRbD--M2N90SxusyOto95M-Hh2yrZY2v_r-U0,761
 cg/cli/delete/case.py,sha256=R12mkYaZbyLoBXnc-Yz4XrFz8iFKtyCtmJnEmwcofj0,4815
 cg/cli/delete/cases.py,sha256=yJRdNna2MsvIcl3fAbs8tDfFs7PDEL_b9FCYdVW5RiQ,1911
 cg/cli/delete/illumina_sequencing_run.py,sha256=YVdRTRVUh1GANKGOIP7axhKCGTrvCXDvwq83mvX0muQ,741
@@ -123,7 +123,7 @@ cg/cli/upload/gens.py,sha256=gUki1iCS3swqTaZChRNLKoFNw2dIeCnMxfBXiAQS6Ow,1929
 cg/cli/upload/gisaid.py,sha256=AS-dsBYH8ECPiop77MXUqosVqtUD1LpnFAr0BnybChM,598
 cg/cli/upload/mutacc.py,sha256=46f0NSEPIfXChnxqSuPeuYrcKuapEY5o-1IMS4Q9KCk,2963
 cg/cli/upload/nipt/__init__.py,sha256=r1bbsGXlNU2acSs7A-g6cyLtYkVS_NqT-Q_Lx52EbqA,23
-cg/cli/upload/nipt/base.py,sha256=U_3tS2T1Lm7_9Ff0tTBA4GlcoCsZxWUb7qjIZe50gDo,2907
+cg/cli/upload/nipt/base.py,sha256=OOtluRLvG9GndMDhTL8UIa5lPeOIFvO2qi3cVnb065U,2906
 cg/cli/upload/nipt/ftp.py,sha256=M5ukDNEr4wMNX8Lga6ogsH8kuVsPqBb6ARNKoAeXkZk,2284
 cg/cli/upload/nipt/statina.py,sha256=k2NaQZdi36IIPNmI5wVdejfnWRYQAS1yLrm2C-evU6o,1637
 cg/cli/upload/observations/__init__.py,sha256=MVG3J0JFrq9aUmssbQccuN4laZsM89Lq7w1Lri1M6jU,112
@@ -138,7 +138,7 @@ cg/cli/workflow/balsamic/__init__.py,sha256=tAp9BLY37Gsg-jvTdgUEoP8lnaHW4I61tXfH
 cg/cli/workflow/balsamic/base.py,sha256=Eku6FROfv8XUAAMnt3F594BRuhhnU-GXVxeLMKzkf1I,7546
 cg/cli/workflow/balsamic/options.py,sha256=7SKjk3EmyB8saS34idmdpHRv0n5HSxu7jGVUT6s5ppA,404
 cg/cli/workflow/balsamic/pon.py,sha256=QAYiFy2IG_oFbpzsekQi8PxzQD9J-99pus9h0Kat_4Y,999
-cg/cli/workflow/balsamic/umi.py,sha256=Lw7VjVOh-wpnlnnQVR3oAlbjurvBIi1fFcZ8nEvb16c,7808
+cg/cli/workflow/balsamic/umi.py,sha256=I5Td6cs8koph42HIRAAjcD1oT4ZdY5LR96ZUZrKw6B0,7807
 cg/cli/workflow/base.py,sha256=AFM89EAnEekIl5Y3d90tBTGlFrkKCpHL1MsrzBp_OaE,1439
 cg/cli/workflow/commands.py,sha256=Obi8SvKXA_xxR9QJBQT7-_dHApyBEK1L16csTU7gLFw,14185
 cg/cli/workflow/fluffy/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -247,7 +247,7 @@ cg/meta/archive/ddn/models.py,sha256=MOEkP7xi38KvabstCPUcPDU61UTg6BW6MUp3OPntbus
 cg/meta/archive/ddn/utils.py,sha256=uvmc--J3ZFq7cEA9Bp0OAJ_Ozz8Uc136bVqFbnPgxjo,1250
 cg/meta/archive/models.py,sha256=ULnAbrYflMszGLD0SdNh5cDvVHuAI7nLt0l13cr3Pmg,2024
 cg/meta/backup/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/meta/backup/backup.py,sha256=BZhubDN4Z7nGQjU7nrZEYPC-tJYsusSphNf2Ak93V9Y,5907
+cg/meta/backup/backup.py,sha256=ViWtC21bij0NYno4IfcCH-5aP4b76FFcXDC89kDAbEo,5906
 cg/meta/clean/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/meta/clean/api.py,sha256=Thz8mdZf4LwYi5plCVXzmTNK2MioHuwaT3UTNat8GYA,3487
 cg/meta/clean/clean_retrieved_spring_files.py,sha256=rg0waRLeultBMvJLHyu9HZt9SBKj-MveZt9cgHxu7V4,1841
@@ -327,7 +327,7 @@ cg/meta/upload/microsalt/microsalt_upload_api.py,sha256=NpQgt8Yogbr8Oa5zGDqQbiZe
 cg/meta/upload/mip/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/meta/upload/mip/mip_dna.py,sha256=1um0b7Bjb74pdxV_J_P7tcaYfX95W2FcCeTZpwms-FQ,2480
 cg/meta/upload/mip/mip_rna.py,sha256=_fecaG2S2YjMwMckTV7QGpyz7d8ZUaMgnIj0MZqjkr4,1349
-cg/meta/upload/mutacc.py,sha256=qYxQAJ0DG1yI8y49xyoGW2abazuNnZPbQuvRMdC5IDM,7294
+cg/meta/upload/mutacc.py,sha256=532llmYMzVqMZAasD47KgZCp8oF1m86HH0beDiF6KUc,7290
 cg/meta/upload/mutant/mutant.py,sha256=2BcpcEKrm9tv7NLHV4Svhb5BIcqzd6MaeW6FCWhY_cw,1135
 cg/meta/upload/nallo/nallo.py,sha256=Fmp1mpGpFfzRlj8qO1SsTqsGiIT_-OCvoWPY58Rvh_k,1821
 cg/meta/upload/nf_analysis.py,sha256=ToL9ekQArFY0x9ACyzwlITBwfrkpzSWrpOtOZF4apV0,1841
@@ -359,7 +359,7 @@ cg/meta/workflow/fastq.py,sha256=M3w5KrHGZtGb_hiMXA8IzY_beGJC-ztkqflhwTAgvp0,124
 cg/meta/workflow/fluffy.py,sha256=BktDMDw9TKZzdBi_Isojb-pxDrNk8QNfGYfx1MIdct4,11543
 cg/meta/workflow/jasen.py,sha256=T8edOEicQ8F2Hj3K5PTPinPzJxNBVn3hUhb2AKbLVSY,521
 cg/meta/workflow/microsalt/__init__.py,sha256=w-sspwtz6QJxFPLNU-K-dybcKQE_8HelzKG6kG-yCbY,70
-cg/meta/workflow/microsalt/constants.py,sha256=e_if9JDSpVgoCq8eanydMZ6twOm3wrGwvrwlQHf4ggQ,116
+cg/meta/workflow/microsalt/constants.py,sha256=FBaUBJQKtV2w5KXb0GKeoQOz9HFfr9XYiRwWIGttuLU,115
 cg/meta/workflow/microsalt/metrics_parser/__init__.py,sha256=ZevqLSVzWc_TzhU_MBos3CGfsZwtVpxLnyWm446obz0,174
 cg/meta/workflow/microsalt/metrics_parser/metrics_parser.py,sha256=vFxkooANyUCgeNYfbwiwz_v_BijhU0cLYZ_qRym1YN8,366
 cg/meta/workflow/microsalt/metrics_parser/models.py,sha256=icINJ7gaN8UOqV6jZ43fPVMuJCFvD7Vm-PXVIUN67-A,903
@@ -533,7 +533,7 @@ cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/nal
 cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/raredisease.py,sha256=yvoSt-Rf6bWQOU5rK_Bu-Sg96qWODfxf4CuATTK9L5g,4777
 cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/rnafusion.py,sha256=irQIT6CsEuGM6xWg_tBzT7ilaa4ubXlJRBLw2Ovkoi8,1501
 cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/taxprofiler.py,sha256=1anmBbsSqGAoYNfPmwt4nV3qe0NSi_DsC58kV2VBhTA,1507
-cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/tomte_params_file_creator.py,sha256=tbwAYcRAYBqbBVtzhYlrgB4utDrImroW3bR8vHxj3LI,2611
+cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/tomte_params_file_creator.py,sha256=talpcK1aKOgUtxhEg3tcvqrbMggZyTbrLgp4zZdbf6A,2612
 cg/services/analysis_starter/configurator/file_creators/nextflow/params_file/utils.py,sha256=DQzuacJs0o4lVFk5voWBVmcfJleCsVTbHcduUc5k5mk,1247
 cg/services/analysis_starter/configurator/file_creators/nextflow/sample_sheet/creator.py,sha256=m7YBih9hPqoWIgW77B_3oQgmzdVp8BFkR0p3EZ0MQ9M,3698
 cg/services/analysis_starter/configurator/file_creators/nextflow/sample_sheet/nallo_sample_sheet_creator.py,sha256=yEGzm-3nIvOgIL8fT_ju23iY-Gp1JLRphu_SOx9DFrE,2497
@@ -591,7 +591,7 @@ cg/services/deliver_files/file_formatter/destination/models.py,sha256=VPtQuc4kRQ
 cg/services/deliver_files/file_formatter/files/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/services/deliver_files/file_formatter/files/abstract.py,sha256=fkNU5pq841mF-h1CM6ja14e1CojxG_iYaah26cDW_Io,460
 cg/services/deliver_files/file_formatter/files/case_service.py,sha256=uo6EexUmFjTwSsUX99_urN0ftx9C7Z3FzdjLl2cRw9s,3555
-cg/services/deliver_files/file_formatter/files/concatenation_service.py,sha256=uAJ-VfX08JlGThgtQF-BdEEP-78vGkIfT5YlJzIGHmw,14281
+cg/services/deliver_files/file_formatter/files/concatenation_service.py,sha256=AMkP_29JOcXfYD21IhsO6QYiw1WWtwfGf1CcUUqCRMU,14260
 cg/services/deliver_files/file_formatter/files/models.py,sha256=kQW-chLaQT6Pe3ORvXOY5fjErDyJ2qtmSNG8M7ttVwY,291
 cg/services/deliver_files/file_formatter/files/mutant_service.py,sha256=OOGADOb4kuYI3ABoVI-Kzkx_qR3X4sMzMXH-OGHRldM,6344
 cg/services/deliver_files/file_formatter/files/sample_service.py,sha256=y6qYFFlaY6wiHUxGatF8ccuavYn1hBFK_U5KKoXY1I8,2923
@@ -817,7 +817,7 @@ cg/services/orders/validation/rules/utils.py,sha256=6-fjv7jAlU78RwPguu9BTBFN7jHQ
 cg/services/orders/validation/service.py,sha256=t1WnCAwMKkZtHFRnROYZenShw946Ln_hM7gFCyq62Sg,4090
 cg/services/orders/validation/utils.py,sha256=BcO3FuD2HiDzLU8T-yvIRftccfjTxAfUaWkZgwFb2DI,2318
 cg/services/pdc_service/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/services/pdc_service/pdc_service.py,sha256=cqeVC4d11wQ-8kjXlszHgYPY_JS7sGCLLnPhDlU6MY0,2884
+cg/services/pdc_service/pdc_service.py,sha256=eF7sX5pNbB_e6EeYJUnuXQDQtoQxQCMPwXzZu-jmeD8,2883
 cg/services/run_devices/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/services/run_devices/abstract_classes.py,sha256=BN3txu4Le8eRDdZ0P5NGPk8ua467uy_jfGPpjbKxgds,3699
 cg/services/run_devices/abstract_models.py,sha256=hu8M8uk0ZStgohllutIxJUP5Hhjv7eUiLuejks2t0GM,377
@@ -861,7 +861,7 @@ cg/services/slurm_service/slurm_cli_service.py,sha256=t-XZoAOPgL-eufwK0A6H8WJvGt
 cg/services/slurm_service/slurm_service.py,sha256=51HEECPZGMypDjEDqs02JKo_2ErwvxewjUYAyR_CLxo,242
 cg/services/slurm_upload_service/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/services/slurm_upload_service/slurm_upload_config.py,sha256=jfhn0CyMAib0AeX24OPuU_Xsh63jKHyXwo_2_N9FWKo,175
-cg/services/slurm_upload_service/slurm_upload_service.py,sha256=C7qe9ZD6FDWwTFoX9F5ETWUjgtRYG64IEjiz8iixED0,2074
+cg/services/slurm_upload_service/slurm_upload_service.py,sha256=950XQh6SYatbOq64sEzYiyRaNGRWCro9kOapJJqd_Pg,2074
 cg/services/slurm_upload_service/utils.py,sha256=BkFW8pj-4UZj9X7pBfBQusRIIfiEhqoIX0ZZg942T7A,203
 cg/services/validate_file_transfer_service/validate_file_transfer_service.py,sha256=D7D5rdNRc1mS1mtXZaUMtAjehfqImtZ814WOLxoYhOc,2990
 cg/services/web_services/application/models.py,sha256=_hIUC49RT1eA_p6Qkro6LaZBR1HlGA6dyTWR6mveFmA,99
@@ -909,20 +909,20 @@ cg/utils/__init__.py,sha256=gGjdV2l_hfWFCTybU6dwDk_FcItM88EIHNPaX6g1qUk,30
 cg/utils/calculations.py,sha256=zLVJO6nNw6n7AW7fHZI56UnQ23lqJrShB4Hh2ow6-TQ,349
 cg/utils/checksum/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/utils/checksum/checksum.py,sha256=jRvL1f6TPV2QyhUBR-WUK7i67wB7a2FKcwrs6kr8GXI,1992
-cg/utils/click/EnumChoice.py,sha256=ogTT49nEAsu60YQeFLp1cCI9t6xzuxmVFA17za53cko,1669
+cg/utils/click/EnumChoice.py,sha256=rtdWcsvq_J0qsPkLEDQJaKJBgK5jzEuVON_HqwJYZro,1668
 cg/utils/click/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/utils/commands.py,sha256=D6tfGBGp3wQMXkNEhquSQ9ZyKzkMn8PvSGAllBVaZWQ,4344
 cg/utils/date.py,sha256=4aX7ZyyRfHHiNsA8yNYw2nzTON-yq3gQSypAEXHK4Wk,2192
 cg/utils/dict.py,sha256=Zr67gvr5_W1Lpe6_MUZDAegWa2oakXVW-JrZgiRcaAw,758
 cg/utils/email.py,sha256=VH15Ezbc_FgSOGJr9KvSiMaEU0TwNaZHVUXlRAaBzxs,1251
-cg/utils/enums.py,sha256=3-QFMKDDPU95o-pTDEAJvLUTf6tjsjQAQM3YDsYfxoU,134
+cg/utils/enums.py,sha256=N9qaDTeu4BkqjKAY5QlF0qrVePl6zXIi6PvtxQ1ZWmo,133
 cg/utils/files.py,sha256=Gu1UmmMWODnYhvyoWxTrya-y9z8TNAGHoE8nrBzyr3c,4029
 cg/utils/flask/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/utils/flask/enum.py,sha256=xwNVtFPkSzoloJctLHu7obRyxcng1GJrhkeYkqwf9tw,1052
 cg/utils/mapping.py,sha256=oZpZW2kgsbtAP2FZ7RtRPELiEE1zZk_nAGisHGtCOUo,491
 cg/utils/time.py,sha256=_VOglhrFEZ5cwHK1U1g36SdwzB7UvV-Nvlt4ymuZUho,1501
 cg/utils/utils.py,sha256=RciI_UhWcnG_pMZrmQZ1ZYb-O1N0DweTYMmhE0SIRgQ,1410
-cg-83.18.1.dist-info/METADATA,sha256=0wIHoWInpcMdWHPBW9WebN8SwMmVOSt-6fyGEOnVg-8,4940
-cg-83.18.1.dist-info/WHEEL,sha256=3ny-bZhpXrU6vSQ1UPG34FoxZBp3lVcvK0LkgUz6VLk,88
-cg-83.18.1.dist-info/entry_points.txt,sha256=q5f47YQQGltzK_xnIq1mDopRXXEItr85Xe1BCtG-Wts,39
-cg-83.18.1.dist-info/RECORD,,
+cg-83.18.2.dist-info/METADATA,sha256=MXE7hERj20Ja7TyHzq7LctxT-EczPxLfNS2L8dzsZfk,4940
+cg-83.18.2.dist-info/WHEEL,sha256=3ny-bZhpXrU6vSQ1UPG34FoxZBp3lVcvK0LkgUz6VLk,88
+cg-83.18.2.dist-info/entry_points.txt,sha256=q5f47YQQGltzK_xnIq1mDopRXXEItr85Xe1BCtG-Wts,39
+cg-83.18.2.dist-info/RECORD,,