cg 83.17.0__py3-none-any.whl → 83.17.1__py3-none-any.whl

cg/__init__.py

@@ -1,2 +1,2 @@
 __title__ = "cg"
-__version__ = "83.17.0"
+__version__ = "83.17.1"

cg/resources/nallo_bundle_filenames.yaml

@@ -282,32 +282,67 @@
   id: SAMPLEID
   path: PATHTOCASE/methylation/pileup/SAMPLEID/SAMPLEID_modkit_pileup_1.bed.gz
   step: methylation_pileup
-  tag: hap1
+  tag: modkit_hap1
 - format: bed
   id: SAMPLEID
   path: PATHTOCASE/methylation/pileup/SAMPLEID/SAMPLEID_modkit_pileup_1.bed.gz.tbi
   step: methylation_pileup
-  tag: hap1_index
+  tag: modkit_hap1_index
 - format: bed
   id: SAMPLEID
   path: PATHTOCASE/methylation/pileup/SAMPLEID/SAMPLEID_modkit_pileup_2.bed.gz
   step: methylation_pileup
-  tag: hap2
+  tag: modkit_hap2
 - format: bed
   id: SAMPLEID
   path: PATHTOCASE/methylation/pileup/SAMPLEID/SAMPLEID_modkit_pileup_2.bed.gz.tbi
   step: methylation_pileup
-  tag: hap2_index
+  tag: modkit_hap2_index
 - format: bed
   id: SAMPLEID
   path: PATHTOCASE/methylation/pileup/SAMPLEID/SAMPLEID_modkit_pileup_ungrouped.bed.gz
   step: methylation_pileup
-  tag: ungrouped
+  tag: modkit_ungrouped
 - format: bed
   id: SAMPLEID
   path: PATHTOCASE/methylation/pileup/SAMPLEID/SAMPLEID_modkit_pileup_ungrouped.bed.gz.tbi
   step: methylation_pileup
-  tag: ungrouped_index
+  tag: modkit_ungrouped_index
+- format: bed
+  id: SAMPLEID
+  path: PATHTOCASE/methylation/pileup/SAMPLEID/SAMPLEID_pbcpgtools.hap1.bed.gz
+  step: methylation_pileup
+  tag: methbat_hap1
+- format: bed
+  id: SAMPLEID
+  path: PATHTOCASE/methylation/pileup/SAMPLEID/SAMPLEID_pbcpgtools.hap1.bed.gz.tbi
+  step: methylation_pileup
+  tag: methbat_hap1_index
+- format: bed
+  id: SAMPLEID
+  path: PATHTOCASE/methylation/pileup/SAMPLEID/SAMPLEID_pbcpgtools.hap2.bed.gz
+  step: methylation_pileup
+  tag: methbat_hap2
+- format: bed
+  id: SAMPLEID
+  path: PATHTOCASE/methylation/pileup/SAMPLEID/SAMPLEID_pbcpgtools.hap2.bed.gz.tbi
+  step: methylation_pileup
+  tag: methbat_hap2_index
+- format: bed
+  id: SAMPLEID
+  path: PATHTOCASE/methylation/pileup/SAMPLEID/SAMPLEID_pbcpgtools.combined.bed.gz
+  step: methylation_pileup
+  tag: methbat_combined
+- format: bed
+  id: SAMPLEID
+  path: PATHTOCASE/methylation/pileup/SAMPLEID/SAMPLEID_pbcpgtools.combined.bed.gz.tbi
+  step: methylation_pileup
+  tag: methbat_combined_index
+- format: tsv
+  id: SAMPLEID
+  path: PATHTOCASE/methylation/profile/SAMPLEID/SAMPLEID_methbat_profile.tsv
+  step: methylation_calling
+  tag: methbat_profile
 - format: meta
   id: SAMPLEID
   path: PATHTOCASE/qc/mosdepth/SAMPLEID/SAMPLEID.per-base.d4

{cg-83.17.0.dist-info → cg-83.17.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cg
-Version: 83.17.0
+Version: 83.17.1
 Summary: Clinical Genomics command center
 Requires-Python: >=3.11,<3.13
 Classifier: Programming Language :: Python

{cg-83.17.0.dist-info → cg-83.17.1.dist-info}/RECORD

@@ -1,4 +1,4 @@
-cg/__init__.py,sha256=TDL5feL1tS5hjQE-OqSwP0vhH9a3_iODEb0iTevqItQ,41
+cg/__init__.py,sha256=Zve1eNmtgbcknDgSp0wAaJYTe-LWKuPFhrQEKOFwKkM,41
 cg/apps/__init__.py,sha256=pYf0vxo4iYQqURzFRYzqpOCdV8Cm9MWx0GHvJOz0EMg,315
 cg/apps/coverage/__init__.py,sha256=dJtsmNf8tODE2-VEomMIoYA7ugLYZAk_upsfOQCZeF8,27
 cg/apps/coverage/api.py,sha256=e_ozC3QeNKoEfpjjMaL-XjeBLtz-JySWccrtw0E9mLM,2940
@@ -460,7 +460,7 @@ cg/models/workflow/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuF
 cg/models/workflow/mutant.py,sha256=Y5cwG7UninrAWCn6R9rTNhSDAkDprCebCilyCBlPIcY,685
 cg/models/workflow/validators.py,sha256=BzbmB9QVDjM1C_7F874PR0QD6xhCZvDG01ItITmFy_s,70
 cg/resources/__init__.py,sha256=mRMKpOEL-NO4JEzQsjTrtDFf8toOtBXK0BhDbPnZGVE,1247
-cg/resources/nallo_bundle_filenames.yaml,sha256=pjJaBgtZtsYAqd-sQ1bCq365u9fcsoN0Gn34JjDduJE,16724
+cg/resources/nallo_bundle_filenames.yaml,sha256=04mNM5DFovMTct0OixgspKtaP91_hENoo1lMf-YUSjY,17899
 cg/resources/raredisease_bundle_filenames.yaml,sha256=IN8QDcYQNxFVWghvSNLJ2-Udsd5ts3uBqD9rnJGj4kg,25278
 cg/resources/rnafusion_bundle_filenames.yaml,sha256=hoXuTobKbjH7W7dld87rSF7X0r4KxLXuUllX0ISDDXU,3281
 cg/resources/taxprofiler_bundle_filenames.yaml,sha256=AULMEAYkMzADYUtVtuSmBj7UaAIlLGRDyBMEOO0xWz8,2871
@@ -922,7 +922,7 @@ cg/utils/flask/enum.py,sha256=xwNVtFPkSzoloJctLHu7obRyxcng1GJrhkeYkqwf9tw,1052
 cg/utils/mapping.py,sha256=oZpZW2kgsbtAP2FZ7RtRPELiEE1zZk_nAGisHGtCOUo,491
 cg/utils/time.py,sha256=_VOglhrFEZ5cwHK1U1g36SdwzB7UvV-Nvlt4ymuZUho,1501
 cg/utils/utils.py,sha256=RciI_UhWcnG_pMZrmQZ1ZYb-O1N0DweTYMmhE0SIRgQ,1410
-cg-83.17.0.dist-info/METADATA,sha256=3vkrM4YOxhmXatZvtpUfE_YaFE8zwb2hphnZScPj_Qo,4940
-cg-83.17.0.dist-info/WHEEL,sha256=3ny-bZhpXrU6vSQ1UPG34FoxZBp3lVcvK0LkgUz6VLk,88
-cg-83.17.0.dist-info/entry_points.txt,sha256=q5f47YQQGltzK_xnIq1mDopRXXEItr85Xe1BCtG-Wts,39
-cg-83.17.0.dist-info/RECORD,,
+cg-83.17.1.dist-info/METADATA,sha256=yUBHF44GMYrBmo4-AXyWg0g0q3SaDDpmkN5VKiQOm3k,4940
+cg-83.17.1.dist-info/WHEEL,sha256=3ny-bZhpXrU6vSQ1UPG34FoxZBp3lVcvK0LkgUz6VLk,88
+cg-83.17.1.dist-info/entry_points.txt,sha256=q5f47YQQGltzK_xnIq1mDopRXXEItr85Xe1BCtG-Wts,39
+cg-83.17.1.dist-info/RECORD,,