cg 83.11.6__py3-none-any.whl → 83.11.8__py3-none-any.whl

cg/__init__.py

@@ -1,2 +1,2 @@
 __title__ = "cg"
-__version__ = "83.11.6"
+__version__ = "83.11.8"

cg/server/admin.py

@@ -883,7 +883,7 @@ class PacbioSmrtCellMetricsView(BaseView):
 
     column_list = (
         "internal_id",
-        "run_name",
+        "sequencing_run.run_name",
         "movie_name",
         "well",
         "plate",
@@ -907,8 +907,9 @@ class PacbioSmrtCellMetricsView(BaseView):
         "internal_id": view_pacbio_sample_sequencing_metrics_link,
         "model": view_smrt_cell_model,
     }
+    column_labels = {"sequencing_run.run_name": "Run Name"}
     column_default_sort = ("completed_at", True)
-    column_searchable_list = ["device.internal_id", "run_name", "movie_name"]
+    column_searchable_list = ["device.internal_id", "movie_name", "sequencing_run.run_name"]
     column_sortable_list = [
         ("internal_id", "device.internal_id"),
         "started_at",
@@ -936,19 +937,22 @@ class PacbioSmrtCellMetricsView(BaseView):
 
 
 class PacbioSampleRunMetricsView(BaseView):
-    column_filters = ["instrument_run.run_name", "instrument_run.plate"]
+    column_filters = [
+        "instrument_run.plate",
+        "instrument_run.sequencing_run.run_name",
+    ]
     column_formatters = {
         "smrt_cell": PacbioSmrtCellMetricsView.view_smrt_cell_link,
         "sample": SampleView.view_sample_link,
     }
     column_labels = {
-        "instrument_run.run_name": "Run name",
         "instrument_run.plate": "Plate",
+        "instrument_run.sequencing_run.run_name": "Run Name",
     }
     column_list = [
         "smrt_cell",
         "sample",
-        "instrument_run.run_name",
+        "instrument_run.sequencing_run.run_name",
         "instrument_run.plate",
         "hifi_reads",
         "hifi_yield",
@@ -958,4 +962,5 @@ class PacbioSampleRunMetricsView(BaseView):
     column_searchable_list = [
         "sample.internal_id",
         "instrument_run.device.internal_id",
+        "instrument_run.sequencing_run.run_name",
     ]

cg/server/app.py

@@ -20,7 +20,6 @@ from cg.server.endpoints.sequencing_metrics.pacbio_sequencing_metrics import (
     PACBIO_SAMPLE_SEQUENCING_METRICS_BLUEPRINT,
 )
 from cg.server.endpoints.sequencing_run.pacbio_sequencing_run import (
-    PACBIO_SEQUENCING_RUN_BLUEPRINT,
     PACBIO_SEQUENCING_RUNS_BLUEPRINT,
 )
 from cg.server.endpoints.sequencing_run.pacbio_smrt_cell_metrics import (
@@ -113,7 +112,6 @@ def _register_blueprints(app: Flask):
     app.register_blueprint(ANALYSES_BLUEPRINT)
     app.register_blueprint(USERS_BLUEPRINT)
     app.register_blueprint(PACBIO_SAMPLE_SEQUENCING_METRICS_BLUEPRINT)
-    app.register_blueprint(PACBIO_SEQUENCING_RUN_BLUEPRINT)
     app.register_blueprint(PACBIO_SEQUENCING_RUNS_BLUEPRINT)
     app.register_blueprint(PACBIO_SMRT_CELL_METRICS_BLUEPRINT)
     app.register_blueprint(INDEX_SEQUENCES_BLUEPRINT)

cg/server/endpoints/sequencing_run/pacbio_sequencing_run.py

@@ -7,33 +7,19 @@ from cg.server.endpoints.error_handler import handle_missing_entries
 from cg.server.endpoints.sequencing_run.dtos import (
     PacbioSequencingRunResponse,
     PacbioSequencingRunUpdateRequest,
-    PacbioSmrtCellMetricsResponse,
 )
 from cg.server.endpoints.utils import before_request
 from cg.server.ext import pacbio_sequencing_runs_service
 
-PACBIO_SEQUENCING_RUN_BLUEPRINT = Blueprint(
-    "pacbio_sequencing_run", __name__, url_prefix="/api/v1/pacbio_sequencing_run"
-)
 PACBIO_SEQUENCING_RUNS_BLUEPRINT = Blueprint(
     "pacbio_sequencing_runs", __name__, url_prefix="/api/v1/"
 )
-PACBIO_SEQUENCING_RUN_BLUEPRINT.before_request(before_request)
 PACBIO_SEQUENCING_RUNS_BLUEPRINT.before_request(before_request)
 
 
-@PACBIO_SEQUENCING_RUN_BLUEPRINT.route("/<run_name>", methods=["GET"])
-@handle_missing_entries
-def get_sequencing_runs(run_name: str):
-    response: PacbioSmrtCellMetricsResponse = (
-        pacbio_sequencing_runs_service.get_sequencing_runs_by_name(run_name)
-    )
-    return jsonify(response.model_dump())
-
-
 @PACBIO_SEQUENCING_RUNS_BLUEPRINT.route("/pacbio_sequencing_runs", methods=["GET"])
 @handle_missing_entries
-def get_sequencing_runs_new():  # TODO rename endpoint to pacbio_sequencing_runs
+def get_sequencing_runs():
     page: int = int(request.args.get("page", "0"))
     page_size: int = int(request.args.get("pageSize", "0"))
     sequencing_runs: PacbioSequencingRunResponse = (

cg/services/run_devices/pacbio/data_storage_service/pacbio_store_service.py

@@ -21,7 +21,7 @@ from cg.services.run_devices.pacbio.data_transfer_service.dto import (
     PacBioSMRTCellMetricsDTO,
 )
 from cg.services.run_devices.pacbio.run_data_generator.run_data import PacBioRunData
-from cg.store.models import PacbioSMRTCell, PacbioSMRTCellMetrics
+from cg.store.models import PacbioSequencingRun, PacbioSMRTCell, PacbioSMRTCellMetrics
 from cg.store.store import Store
 
 LOG = logging.getLogger(__name__)
@@ -37,17 +37,23 @@ class PacBioStoreService(PostProcessingStoreService):
 
     def _create_pacbio_sequencing_run_if_non_existent(
         self, sequencing_run_dto: PacBioSequencingRunDTO
-    ) -> None:
+    ) -> PacbioSequencingRun:
         try:
-            self.store.create_pacbio_sequencing_run(sequencing_run_dto)
+            return self.store.create_pacbio_sequencing_run(sequencing_run_dto)
         except PacbioSequencingRunAlreadyExistsError:
             LOG.debug(f"Sequencing run {sequencing_run_dto.run_name} already exists")
+            return self.store.get_pacbio_sequencing_run_by_run_name(sequencing_run_dto.run_name)
 
     def _create_pacbio_smrt_cell_metrics(
-        self, instrument_run_dto: PacBioSMRTCellMetricsDTO, smrt_cell: PacbioSMRTCell
+        self,
+        instrument_run_dto: PacBioSMRTCellMetricsDTO,
+        sequencing_run: PacbioSequencingRun,
+        smrt_cell: PacbioSMRTCell,
     ) -> PacbioSMRTCellMetrics:
         return self.store.create_pacbio_smrt_cell_metrics(
-            smrt_cell_metrics_dto=instrument_run_dto, smrt_cell=smrt_cell
+            smrt_cell_metrics_dto=instrument_run_dto,
+            sequencing_run=sequencing_run,
+            smrt_cell=smrt_cell,
         )
 
     def _create_sample_run_metrics(
@@ -79,10 +85,14 @@ class PacBioStoreService(PostProcessingStoreService):
     )
     def store_post_processing_data(self, run_data: PacBioRunData, dry_run: bool = False) -> None:
         dtos: PacBioDTOs = self.data_transfer_service.get_post_processing_dtos(run_data)
-        self._create_pacbio_sequencing_run_if_non_existent(dtos.sequencing_run)
+        sequencing_run: PacbioSequencingRun = self._create_pacbio_sequencing_run_if_non_existent(
+            dtos.sequencing_run
+        )
         smrt_cell: PacbioSMRTCell = self._create_run_device(dtos.run_device)
         smrt_cell_metrics: PacbioSMRTCellMetrics = self._create_pacbio_smrt_cell_metrics(
-            instrument_run_dto=dtos.smrt_cell_metrics, smrt_cell=smrt_cell
+            instrument_run_dto=dtos.smrt_cell_metrics,
+            sequencing_run=sequencing_run,
+            smrt_cell=smrt_cell,
         )
         self._create_sample_run_metrics(
             sample_run_metrics_dtos=dtos.sample_sequencing_metrics,

cg/services/run_devices/pacbio/sequencing_runs_service.py

@@ -21,6 +21,7 @@ class PacbioSequencingRunsService:
         for db_run in db_runs:
             run_dict = db_run.to_dict()
             run_dict["internal_id"] = db_run.device.internal_id
+            run_dict["run_name"] = db_run.sequencing_run.run_name
             run = PacbioSmrtCellMetricsDTO.model_validate(run_dict)
             runs.append(run)
         return PacbioSmrtCellMetricsResponse(runs=runs)

cg/store/crud/create.py

@@ -529,46 +529,49 @@ class CreateMixin(ReadHandler):
             return sequencing_run
 
     def create_pacbio_smrt_cell_metrics(
-        self, smrt_cell_metrics_dto: PacBioSMRTCellMetricsDTO, smrt_cell: PacbioSMRTCell
+        self,
+        sequencing_run: PacbioSequencingRun,
+        smrt_cell_metrics_dto: PacBioSMRTCellMetricsDTO,
+        smrt_cell: PacbioSMRTCell,
     ) -> PacbioSMRTCellMetrics:
         LOG.debug(f"Creating Pacbio SMRT cell metrics for SMRT cell {smrt_cell.internal_id}")
         new_sequencing_run = PacbioSMRTCellMetrics(
-            type=smrt_cell_metrics_dto.type,
-            well=smrt_cell_metrics_dto.well,
-            plate=smrt_cell_metrics_dto.plate,
-            run_name=smrt_cell_metrics_dto.run_name,
-            movie_name=smrt_cell_metrics_dto.movie_name,
-            started_at=smrt_cell_metrics_dto.started_at,
+            barcoded_hifi_mean_read_length=smrt_cell_metrics_dto.barcoded_hifi_mean_read_length,
+            barcoded_hifi_reads=smrt_cell_metrics_dto.barcoded_hifi_reads,
+            barcoded_hifi_reads_percentage=smrt_cell_metrics_dto.barcoded_hifi_reads_percentage,
+            barcoded_hifi_yield=smrt_cell_metrics_dto.barcoded_hifi_yield,
+            barcoded_hifi_yield_percentage=smrt_cell_metrics_dto.barcoded_hifi_yield_percentage,
             completed_at=smrt_cell_metrics_dto.completed_at,
-            hifi_reads=smrt_cell_metrics_dto.hifi_reads,
-            hifi_yield=smrt_cell_metrics_dto.hifi_yield,
+            control_mean_read_concordance=smrt_cell_metrics_dto.control_mean_read_concordance,
+            control_mean_read_length=smrt_cell_metrics_dto.control_mean_read_length,
+            control_mode_read_concordance=smrt_cell_metrics_dto.control_mode_read_concordance,
+            control_reads=smrt_cell_metrics_dto.control_reads,
+            device=smrt_cell,
+            failed_mean_read_length=smrt_cell_metrics_dto.failed_mean_read_length,
+            failed_reads=smrt_cell_metrics_dto.failed_reads,
+            failed_yield=smrt_cell_metrics_dto.failed_yield,
             hifi_mean_read_length=smrt_cell_metrics_dto.hifi_mean_read_length,
             hifi_median_read_quality=smrt_cell_metrics_dto.hifi_median_read_quality,
-            percent_reads_passing_q30=smrt_cell_metrics_dto.percent_reads_passing_q30,
-            productive_zmws=smrt_cell_metrics_dto.productive_zmws,
+            hifi_reads=smrt_cell_metrics_dto.hifi_reads,
+            hifi_yield=smrt_cell_metrics_dto.hifi_yield,
+            movie_name=smrt_cell_metrics_dto.movie_name,
             p0_percent=smrt_cell_metrics_dto.p0_percent,
             p1_percent=smrt_cell_metrics_dto.p1_percent,
             p2_percent=smrt_cell_metrics_dto.p2_percent,
+            percent_reads_passing_q30=smrt_cell_metrics_dto.percent_reads_passing_q30,
+            plate=smrt_cell_metrics_dto.plate,
+            polymerase_longest_subread_n50=smrt_cell_metrics_dto.polymerase_longest_subread_n50,
+            polymerase_mean_longest_subread=smrt_cell_metrics_dto.polymerase_mean_longest_subread,
             polymerase_mean_read_length=smrt_cell_metrics_dto.polymerase_mean_read_length,
             polymerase_read_length_n50=smrt_cell_metrics_dto.polymerase_read_length_n50,
-            polymerase_mean_longest_subread=smrt_cell_metrics_dto.polymerase_mean_longest_subread,
-            polymerase_longest_subread_n50=smrt_cell_metrics_dto.polymerase_longest_subread_n50,
-            control_reads=smrt_cell_metrics_dto.control_reads,
-            control_mean_read_length=smrt_cell_metrics_dto.control_mean_read_length,
-            control_mean_read_concordance=smrt_cell_metrics_dto.control_mean_read_concordance,
-            control_mode_read_concordance=smrt_cell_metrics_dto.control_mode_read_concordance,
-            failed_reads=smrt_cell_metrics_dto.failed_reads,
-            failed_yield=smrt_cell_metrics_dto.failed_yield,
-            failed_mean_read_length=smrt_cell_metrics_dto.failed_mean_read_length,
-            barcoded_hifi_reads=smrt_cell_metrics_dto.barcoded_hifi_reads,
-            barcoded_hifi_reads_percentage=smrt_cell_metrics_dto.barcoded_hifi_reads_percentage,
-            barcoded_hifi_yield=smrt_cell_metrics_dto.barcoded_hifi_yield,
-            barcoded_hifi_yield_percentage=smrt_cell_metrics_dto.barcoded_hifi_yield_percentage,
-            barcoded_hifi_mean_read_length=smrt_cell_metrics_dto.barcoded_hifi_mean_read_length,
+            productive_zmws=smrt_cell_metrics_dto.productive_zmws,
+            sequencing_run=sequencing_run,
+            started_at=smrt_cell_metrics_dto.started_at,
+            type=smrt_cell_metrics_dto.type,
+            unbarcoded_hifi_mean_read_length=smrt_cell_metrics_dto.unbarcoded_hifi_mean_read_length,
             unbarcoded_hifi_reads=smrt_cell_metrics_dto.unbarcoded_hifi_reads,
             unbarcoded_hifi_yield=smrt_cell_metrics_dto.unbarcoded_hifi_yield,
-            unbarcoded_hifi_mean_read_length=smrt_cell_metrics_dto.unbarcoded_hifi_mean_read_length,
-            device=smrt_cell,
+            well=smrt_cell_metrics_dto.well,
         )
         self.add_item_to_store(new_sequencing_run)
         return new_sequencing_run

cg/store/crud/read.py

@@ -1816,8 +1816,10 @@ class ReadHandler(BaseHandler):
         Raises:
             EntryNotFoundError if no sequencing runs are found for the run name
         """
-        runs: Query = self._get_query(table=PacbioSMRTCellMetrics)
-        runs = runs.filter(PacbioSMRTCellMetrics.run_name == run_name)
+        runs: Query = self._get_query(table=PacbioSMRTCellMetrics).join(
+            PacbioSMRTCellMetrics.sequencing_run
+        )
+        runs = runs.filter(PacbioSequencingRun.run_name == run_name)
         if runs.count() == 0:
             raise EntryNotFoundError(f"Could not find any sequencing runs for {run_name}")
         return runs.all()
@@ -1868,3 +1870,16 @@ class ReadHandler(BaseHandler):
             raise PacbioSequencingRunNotFoundError(
                 f"Pacbio Sequencing run with id {id} was not found in the database."
             )
+
+    def get_pacbio_sequencing_run_by_run_name(self, run_name: str) -> PacbioSequencingRun:
+        """
+        Get Pacbio Sequencing run by run name.
+        Raises:
+            PacbioSequencingRunNotFoundError: If no Pacbio sequencing run is found with the given run name.
+        """
+        try:
+            return self._get_query(table=PacbioSequencingRun).filter_by(run_name=run_name).one()
+        except sqlalchemy.orm.exc.NoResultFound:
+            raise PacbioSequencingRunNotFoundError(
+                f"Pacbio Sequencing run with run_name {run_name} was not found in the database."
+            )

cg/store/models.py

@@ -1029,43 +1029,57 @@ class PacbioSMRTCellMetrics(InstrumentRun):
     id: Mapped[int] = mapped_column(
         ForeignKey("instrument_run.id", ondelete="CASCADE"), primary_key=True
     )
-    well: Mapped[Str32]
-    plate: Mapped[int]
-    run_name: Mapped[Str32]
-    movie_name: Mapped[Str32]
-    started_at: Mapped[datetime]
+    barcoded_hifi_mean_read_length: Mapped[BigInt]
+    barcoded_hifi_reads_percentage: Mapped[Num_6_2]
+    barcoded_hifi_reads: Mapped[BigInt]
+    barcoded_hifi_yield_percentage: Mapped[Num_6_2]
+    barcoded_hifi_yield: Mapped[BigInt]
     completed_at: Mapped[datetime]
-    hifi_reads: Mapped[BigInt]
-    hifi_yield: Mapped[BigInt]
+    control_mean_read_concordance: Mapped[Num_6_2]
+    control_mean_read_length: Mapped[BigInt]
+    control_mode_read_concordance: Mapped[Num_6_2]
+    control_reads: Mapped[BigInt]
+    failed_mean_read_length: Mapped[BigInt]
+    failed_reads: Mapped[BigInt]
+    failed_yield: Mapped[BigInt]
     hifi_mean_read_length: Mapped[BigInt]
     hifi_median_read_quality: Mapped[Str32]
-    percent_reads_passing_q30: Mapped[Num_6_2]
+    hifi_reads: Mapped[BigInt]
+    hifi_yield: Mapped[BigInt]
+    movie_name: Mapped[Str32]
     p0_percent: Mapped[Num_6_2]
     p1_percent: Mapped[Num_6_2]
     p2_percent: Mapped[Num_6_2]
-    productive_zmws: Mapped[BigInt]
+    pacbio_sequencing_run_id: Mapped[int] = mapped_column(
+        ForeignKey(
+            "pacbio_sequencing_run.id",
+            ondelete="CASCADE",
+            name="pacbio_smrt_cell_metrics_pacbio_sequencing_run_fk",
+        )
+    )
+    percent_reads_passing_q30: Mapped[Num_6_2]
+    plate: Mapped[int]
+    polymerase_longest_subread_n50: Mapped[BigInt]
+    polymerase_mean_longest_subread: Mapped[BigInt]
     polymerase_mean_read_length: Mapped[BigInt]
     polymerase_read_length_n50: Mapped[BigInt]
-    polymerase_mean_longest_subread: Mapped[BigInt]
-    polymerase_longest_subread_n50: Mapped[BigInt]
-    control_reads: Mapped[BigInt]
-    control_mean_read_length: Mapped[BigInt]
-    control_mean_read_concordance: Mapped[Num_6_2]
-    control_mode_read_concordance: Mapped[Num_6_2]
-    failed_reads: Mapped[BigInt]
-    failed_yield: Mapped[BigInt]
-    failed_mean_read_length: Mapped[BigInt]
-    barcoded_hifi_reads: Mapped[BigInt]
-    barcoded_hifi_reads_percentage: Mapped[Num_6_2]
-    barcoded_hifi_yield: Mapped[BigInt]
-    barcoded_hifi_yield_percentage: Mapped[Num_6_2]
-    barcoded_hifi_mean_read_length: Mapped[BigInt]
+    productive_zmws: Mapped[BigInt]
+    started_at: Mapped[datetime]
+    unbarcoded_hifi_mean_read_length: Mapped[BigInt]
     unbarcoded_hifi_reads: Mapped[BigInt]
     unbarcoded_hifi_yield: Mapped[BigInt]
-    unbarcoded_hifi_mean_read_length: Mapped[BigInt]
+    well: Mapped[Str32]
+
+    sequencing_run: Mapped["PacbioSequencingRun"] = orm.relationship(
+        back_populates="smrt_cell_metrics"
+    )
 
     __mapper_args__ = {"polymorphic_identity": DeviceType.PACBIO}
 
+    @property
+    def run_name(self) -> str:
+        return self.sequencing_run.run_name
+
     def to_dict(self):
         return to_dict(self)
 
@@ -1142,6 +1156,10 @@ class PacbioSequencingRun(Base):
         types.Enum(*(revio_name.value for revio_name in RevioNames))
     )
 
+    smrt_cell_metrics: Mapped[list[PacbioSMRTCellMetrics]] = orm.relationship(
+        back_populates="sequencing_run"
+    )
+
 
 class OrderTypeApplication(Base):
     """Maps an order type to its allowed applications"""

{cg-83.11.6.dist-info → cg-83.11.8.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cg
-Version: 83.11.6
+Version: 83.11.8
 Summary: Clinical Genomics command center
 Requires-Python: >=3.11,<3.13
 Classifier: Programming Language :: Python

{cg-83.11.6.dist-info → cg-83.11.8.dist-info}/RECORD

@@ -1,4 +1,4 @@
-cg/__init__.py,sha256=BaoVX49jAyvp7gGKBkEnbd8Kes4liH6q_f4Lr2gMeRQ,41
+cg/__init__.py,sha256=yzOx_FVs-IfMsX26cR34Qgw4w04sas1xLr5va0KTq6A,41
 cg/apps/__init__.py,sha256=pYf0vxo4iYQqURzFRYzqpOCdV8Cm9MWx0GHvJOz0EMg,315
 cg/apps/coverage/__init__.py,sha256=dJtsmNf8tODE2-VEomMIoYA7ugLYZAk_upsfOQCZeF8,27
 cg/apps/coverage/api.py,sha256=e_ozC3QeNKoEfpjjMaL-XjeBLtz-JySWccrtw0E9mLM,2940
@@ -467,8 +467,8 @@ cg/resources/rnafusion_bundle_filenames.yaml,sha256=hoXuTobKbjH7W7dld87rSF7X0r4K
 cg/resources/taxprofiler_bundle_filenames.yaml,sha256=AULMEAYkMzADYUtVtuSmBj7UaAIlLGRDyBMEOO0xWz8,2871
 cg/resources/tomte_bundle_filenames.yaml,sha256=lFxk9GssmCyKBUn5lbRBtBS9FS9cABaoVzb-e2zrJac,4144
 cg/server/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/server/admin.py,sha256=Xhzvq4T9_PmaeClB4OcuAHzp5oGETGyo5nLaV9f5z1k,29314
-cg/server/app.py,sha256=wb1nsK4LNcFYG0bp_JXpghX3Q0-bRx687Y1S1hVBRU0,7072
+cg/server/admin.py,sha256=JUZvNdTwjfNoZbSo_tZNS-ZMAeRKheAW9nfAcrrkw6w,29522
+cg/server/app.py,sha256=WEULzx5JeC0aJHag3Vltzopd8r7tgHPr_1nbytS-AI8,6975
 cg/server/app_config.py,sha256=8DaNtYtdp6A29FAuTFX-Lk7SLv7Zx-_f57ZU0-T_3ZI,1403
 cg/server/auto.py,sha256=5DqokNScv483imZTvOYrJo6wV9-P7ZGnJaaHnfnNJLs,57
 cg/server/dto/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -499,7 +499,7 @@ cg/server/endpoints/sequencing_metrics/error_handler.py,sha256=rVASP7uk1qSA5qu__
 cg/server/endpoints/sequencing_metrics/illumina_sequencing_metrics.py,sha256=IvXMH2KIeOH98lJkaFLPFIRj7j6uW3oBaJZozQ5Tva0,810
 cg/server/endpoints/sequencing_metrics/pacbio_sequencing_metrics.py,sha256=iglo2cOYSPuK4HAWH4XPGLgbZOst2spdB7A6mQ8th8g,1218
 cg/server/endpoints/sequencing_run/dtos.py,sha256=ezs1TW0XyKO8gYyRreq6iQsFwLtgV8tzO96fzXT6kWg,1023
-cg/server/endpoints/sequencing_run/pacbio_sequencing_run.py,sha256=Ap8hVJUvGUzOHyiYw7RDgLsrdelae1K8U19Ibb6rT5c,2115
+cg/server/endpoints/sequencing_run/pacbio_sequencing_run.py,sha256=HvV7EPwrh_xe5ZjerQYoBK-bIdKLBZ1nk16whGSDAmw,1524
 cg/server/endpoints/sequencing_run/pacbio_smrt_cell_metrics.py,sha256=FVETf-KUghGbb7KGO2sDYWISp3Z9gnublo-9ekQHUuk,819
 cg/server/endpoints/users.py,sha256=48z9Si2EuJ6wcN8jBIr0yvmtgygozYgUIytyFuTzFao,696
 cg/server/endpoints/utils.py,sha256=RjhrcBqY3Mfg_hZIeXr6SfmCTu4FMpan-n5UNDjOeMg,2251
@@ -826,7 +826,7 @@ cg/services/run_devices/constants.py,sha256=-zI33OxI9XvXlyeSGw8jdqeuD_S1CFQRwWW5
 cg/services/run_devices/error_handler.py,sha256=BXVXy-8i4hr5jd7H5LEPs_sT7YzCzQMNoFV8m7y9BEc,636
 cg/services/run_devices/exc.py,sha256=6MH1yusfPNNa2RSbHhe48-WlUG1YJQsxMK2TkjemloI,1021
 cg/services/run_devices/pacbio/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/services/run_devices/pacbio/data_storage_service/pacbio_store_service.py,sha256=WuAQLokw-j4vVQntMXWKGICEj7ANm02wzRlzWZUcj1g,4368
+cg/services/run_devices/pacbio/data_storage_service/pacbio_store_service.py,sha256=dZWnssL1RgGkruPfKtJxZjghW1AGj8aiL4J4U7RorLE,4742
 cg/services/run_devices/pacbio/data_transfer_service/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/services/run_devices/pacbio/data_transfer_service/data_transfer_service.py,sha256=XqJ6cJc2KfiI0svQFvZe8Hz4EcCDaggbvKkp6HBejag,2410
 cg/services/run_devices/pacbio/data_transfer_service/dto.py,sha256=g_7nrCLjQyEstLbR10v6cZV6hZnlCX2RQbPCFL8vAzE,2022
@@ -843,7 +843,7 @@ cg/services/run_devices/pacbio/run_data_generator/run_data.py,sha256=si-F7CCwmIF
 cg/services/run_devices/pacbio/run_file_manager/models.py,sha256=C6kycBPx6YKNq2oFJOIhdrcPloi3QIBOrlbaAgeYzgs,192
 cg/services/run_devices/pacbio/run_file_manager/run_file_manager.py,sha256=xW8cKrLKh445hQnmtuIrvg6INs2lMSaDirG83fvimI4,5068
 cg/services/run_devices/pacbio/run_validator/pacbio_run_validator.py,sha256=d8fvmJcByEFPMnwqOe6mQsXXIO87WkXwfK9L_Bx7whg,3037
-cg/services/run_devices/pacbio/sequencing_runs_service.py,sha256=p9NlHocOnVAAcz4SQV6eVolRCBHfi6UXxmb7s3wHBUA,2073
+cg/services/run_devices/pacbio/sequencing_runs_service.py,sha256=nLT8uCSztpgS-G8J1m16BBeJi4x_NMddMw1hS0Ook2w,2139
 cg/services/run_devices/run_names/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/services/run_devices/run_names/pacbio.py,sha256=DqvwtrVPeUeWu9PljeBrgGi_GT_8_lJRkgZTDU3WwhA,663
 cg/services/run_devices/run_names/service.py,sha256=y2ljpN_gGew6grIHnez740IW6cOzyyz0sWS_O9Jut68,288
@@ -875,9 +875,9 @@ cg/store/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 cg/store/api/data_classes.py,sha256=vgJehK0zm3SdB4LAQAWvTjoCHfos4N8_Vf0DDshrAnM,289
 cg/store/base.py,sha256=qmIjuWuq_wryBfGoSZny9nvqZj7Hl8N23hcdQ7Hss5I,6885
 cg/store/crud/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-cg/store/crud/create.py,sha256=c2JwsHPMgnY6addq9hFV3DUTfi-EAI1l71vLLlrZG14,22457
+cg/store/crud/create.py,sha256=ZEhhpoIXd05GP8DWIR5yFDb4X-Vg2BWrUinW8n89SfI,22509
 cg/store/crud/delete.py,sha256=TlpoVWvUQMaRfy5bk-icFf9SSi_0Ir6XpFcAiM22DB0,1386
-cg/store/crud/read.py,sha256=djBomfocspToVm9-A2E7-ZsZUL8z4gyGw28Sqx6qnYk,78185
+cg/store/crud/read.py,sha256=4cxHQVYAHLSwHiNrh6rq207w99cKfLFMKtgd-iupXoM,78857
 cg/store/crud/update.py,sha256=FZvOPebNnkWICu1N4gTdFeiMcuTUPglgCDfaxE6G288,6262
 cg/store/database.py,sha256=7B0hZpMSKtu5R885TSI4UBj8id1T5JNBY-tn69n6Fk0,1662
 cg/store/exc.py,sha256=uUCywNSwGus2uZnqmN56LHV84fHfkFYo8jXms1ToCnQ,274
@@ -904,7 +904,7 @@ cg/store/filters/status_panel_filters.py,sha256=qMYhIsrF9G3mjCvL9b9O2l_cmD3SfPWh
 cg/store/filters/status_pool_filters.py,sha256=XcYqe2z5k_q09xpp4cleDMQ4Q3o2y7UPCkB0QUkl1ck,4308
 cg/store/filters/status_sample_filters.py,sha256=mRpt_ik7niMjBo9K7pP8cmdfDMdr0B3I6Tt2MWXkLoc,9656
 cg/store/filters/status_user_filters.py,sha256=sMwKeWqgEtqv8gyhbN_Uf5huPUxbOt5qEqMWVu67Zys,1328
-cg/store/models.py,sha256=uSSaXzdLx74W_CYQ-u1yHJW3Pw2ymIfkF0baiMW3E-g,42281
+cg/store/models.py,sha256=7Fa_DvM8Cf0W5krBjHlK5MiQ2eOTrQ8Y_a3XlNQKMHw,42826
 cg/store/store.py,sha256=mz1TfKPlanH2uQyhZdwe_8VKg0IdFolmromKLu668IY,630
 cg/utils/__init__.py,sha256=gGjdV2l_hfWFCTybU6dwDk_FcItM88EIHNPaX6g1qUk,30
 cg/utils/calculations.py,sha256=zLVJO6nNw6n7AW7fHZI56UnQ23lqJrShB4Hh2ow6-TQ,349
@@ -923,7 +923,7 @@ cg/utils/flask/enum.py,sha256=xwNVtFPkSzoloJctLHu7obRyxcng1GJrhkeYkqwf9tw,1052
 cg/utils/mapping.py,sha256=oZpZW2kgsbtAP2FZ7RtRPELiEE1zZk_nAGisHGtCOUo,491
 cg/utils/time.py,sha256=_VOglhrFEZ5cwHK1U1g36SdwzB7UvV-Nvlt4ymuZUho,1501
 cg/utils/utils.py,sha256=RciI_UhWcnG_pMZrmQZ1ZYb-O1N0DweTYMmhE0SIRgQ,1410
-cg-83.11.6.dist-info/METADATA,sha256=7C9wXa5ZsylcchxfHb4piihA72ZXUkAR6sNFdiTK8rI,4940
-cg-83.11.6.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
-cg-83.11.6.dist-info/entry_points.txt,sha256=q5f47YQQGltzK_xnIq1mDopRXXEItr85Xe1BCtG-Wts,39
-cg-83.11.6.dist-info/RECORD,,
+cg-83.11.8.dist-info/METADATA,sha256=dBSQBPXkY0eaxX1PQg1ID9cInmbaGBZ71T8Khitq9yU,4940
+cg-83.11.8.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
+cg-83.11.8.dist-info/entry_points.txt,sha256=q5f47YQQGltzK_xnIq1mDopRXXEItr85Xe1BCtG-Wts,39
+cg-83.11.8.dist-info/RECORD,,